Rw6G028990

nucleobase-ascorbate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0019950
Physical Location & Seq
Reverse (-)
53087782 .. 53095345
7564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028990.1

Sequence Viewer

Length: 1194 bp
ATGAGGCAACCGAATGCACCAGAAGTGAACGTCGAAGCGGACCTCGAGGCCGCCGCTCTGAATCTAAATGATTATCCCCAGCCGCTTCCACCGGCAAGGGAATCACTTTGGACGAGCATGGAGCTCACACTCAATTGCCCCTTCCCCCCTCCGGGCTGTGGAGCTACTACCATTTTGATGGCTTTCCAGCACACAGTCGTCATGCTTGGCCAGCTGGTGATGATCGTCAGCCTCCTTGTCCCATTGATGGGGGGTGGAGAGGAGGAGAAAGCTAAGATCATATTGATCTCCTTGTTCATATCCGGGTGGACCACGTTGATGCAGTGTTTGTTGGGCACTTTGCTTCCTTCGGTGATGGCATCTTCATCATATGCCTACTTTATTCCGAGTATGGCCATTGCCCAAAGGTTTGCCAATGAGGATCCCTCAAAGAGATTCAGCCAGACCATGAGGACTTTACAGGGTGCACTCATGATGGCATCCCTTTTTCAGCTGGTGATTGCCTCACTTGGGGTTGCTCAGTTCGGGAGGAGGCTCAGGCCTTTGATTGCTGCTCCATTGGTTATCTTATCGGGATTTGGGTTCTTCTCATCAGGCTTCCCCCAGATACCATTATGCTCTGAGGTTTCATTTCCAGCTCTGATGATTCTAGTTTTCCTCTCGATTATTCTGCCTTACATATATTACCACAGATTTACAGATATTCAGCGTTGGAGCCCGGCATCTGTTACTAAGTGTTCTAGTGGATTTATTGCATCATCCCGGCTATCTGGAGTGACCCCTATTCCACCTTTTGTCCTGAGGCGAGGTGCGATTTTTCAGAGCATTGGCAGTTTCTCTGGTAGTATGTTTGGCACAGTCACTGGCATCACGACCTCAATTGAGAGTGTAGGTCTTGTCGGACTCACTCGTGTTGCTACCAGAGATGTGACTCCTGTGACAGCACTAGTGAGTGATATAGTCTTGGTCTTCGGCACATCGGCACCGACTATTGGGGTCTTCACTGCGCTGCTACTAGACCTAGTCATGCCTCGAGATGAGACAGATGGTCTTGGATTAGATAGTGGCATGCAGTGGTTTATCTATTTCTGGGACTGTAGACCAAATAGCCAGACCGCGACCTACTATTCAGTACGGTTCTATCTTAGGCATTTATTTGAGAGGGTTTCTGTATCTTTTAGGGGACTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

397

Amino Acids

43.4

Weight (kDa)

7.6

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 57 - 202 5.5e-12 Permease family
Xan_ur_permease PF00860 253 - 325 6.2e-06 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019950)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0291781
rosa_multiflora Rmu_sc0002226.1_g000033
rosa_roxburghii Rroxscaffold_7G00175740
rosa_samantha Rh6BG047900 Rh6CG046600 Rh6CG347600
rosa_wichuraiana Rw6G028990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 982
AccBSI CCGCTC 1 cut(s) 56
AccI GTMKAC 1 cut(s) 1099
AccII CGCG 1 cut(s) 1118
AciI CCGC 5 cut(s) 38, 51, 54, 83, 1116
AclWI GGATC 2 cut(s) 416, 429
AcoI YGGCCR 2 cut(s) 208, 393
AfaI GTAC 1 cut(s) 1134
AfiI CCNNNNNNNGG 7 cut(s) 151, 152, 158, 247, 248, 510, 992
AhdI GACNNNNNGTC 1 cut(s) 1047
AhlI ACTAGT 1 cut(s) 946
AluBI AGCT 6 cut(s) 124, 164, 214, 272, 493, 638
AluI AGCT 6 cut(s) 124, 164, 214, 272, 493, 638
Alw21I GWGCWC 2 cut(s) 126, 469
Alw26I GTCTC 1 cut(s) 1034
Alw44I GTGCAC 1 cut(s) 465
AlwI GGATC 2 cut(s) 416, 429
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 2 cut(s) 44, 1032
AoxI GGCC 4 cut(s) 48, 208, 393, 539
ApaLI GTGCAC 1 cut(s) 465
ApeKI GCWGC 2 cut(s) 551, 1009
AspLEI GCGC 1 cut(s) 1009
AspS9I GGNCC 2 cut(s) 40, 309
AsuC2I CCSGG 4 cut(s) 153, 304, 719, 763
AsuHPI GGTGA 3 cut(s) 229, 364, 508
AvaI CYCGRG 2 cut(s) 44, 1032
AvaII GGWCC 2 cut(s) 40, 309
AxyI CCTNAGG 1 cut(s) 800
BaeGI GKGCMC 2 cut(s) 338, 469
BalI TGGCCA 2 cut(s) 210, 395
BamHI GGATCC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 982
BanII GRGCYC 2 cut(s) 126, 719
BauI CACGAG 1 cut(s) 909
BbsI GAAGAC 2 cut(s) 961, 991
Bbv12I GWGCWC 2 cut(s) 126, 469
BbvI GCAGC 2 cut(s) 538, 996
BccI CCATC 5 cut(s) 172, 241, 349, 469, 1040
BcgI CGANNNNNNTGC 2 cut(s) 652, 686
BcnI CCSGG 4 cut(s) 153, 304, 719, 763
BcoDI GTCTC 1 cut(s) 1034
BcuI ACTAGT 1 cut(s) 946
BfaI CTAG 6 cut(s) 650, 741, 947, 1016, 1022, 1192
BfmI CTRYAG 1 cut(s) 1096
BisI GCNGC 5 cut(s) 51, 54, 83, 552, 1010
BlsI GCNGC 5 cut(s) 52, 55, 84, 553, 1011
Bme1390I CCNGG 4 cut(s) 153, 304, 719, 763
Bme18I GGWCC 2 cut(s) 40, 309
BmeRI GACNNNNNGTC 1 cut(s) 1047
BmeT110I CYCGRG 2 cut(s) 44, 1032
BmgT120I GGNCC 2 cut(s) 40, 309
BmiI GGNNCC 3 cut(s) 423, 716, 984
BmrFI CCNGG 4 cut(s) 153, 304, 719, 763
BmsI GCATC 6 cut(s) 309, 368, 488, 731, 764, 876
BpiI GAAGAC 2 cut(s) 961, 991
BplI GAGNNNNNCTC 2 cut(s) 410, 442
BpmI CTGGAG 1 cut(s) 792
Bpu10I CCTNAGC 1 cut(s) 536
BpuMI CCSGG 4 cut(s) 153, 304, 719, 763
Bsc4I CCNNNNNNNGG 7 cut(s) 151, 152, 158, 247, 248, 510, 992
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 868
Bse21I CCTNAGG 1 cut(s) 800
Bse3DI GCAATG 1 cut(s) 396
BseGI GGATG 2 cut(s) 479, 758
BseLI CCNNNNNNNGG 7 cut(s) 151, 152, 158, 247, 248, 510, 992
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 4 cut(s) 533, 550, 612, 791
BseNI ACTGG 1 cut(s) 868
BseRI GAGGAG 3 cut(s) 275, 278, 544
BseSI GKGCMC 2 cut(s) 338, 469
BseXI GCAGC 2 cut(s) 538, 996
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 1118
BshFI GGCC 4 cut(s) 50, 210, 395, 541
BshNI GGYRCC 1 cut(s) 982
BsiHKAI GWGCWC 2 cut(s) 126, 469
BsiHKCI CYCGRG 2 cut(s) 44, 1032
BsiSI CCGG 5 cut(s) 92, 152, 303, 719, 763
BslFI GGGAC 2 cut(s) 224, 1106
BslI CCNNNNNNNGG 7 cut(s) 151, 152, 158, 247, 248, 510, 992
BsmAI GTCTC 1 cut(s) 1034
BsmFI GGGAC 2 cut(s) 224, 1106
BsmI GAATGC 1 cut(s) 19
BsnI GGCC 4 cut(s) 50, 210, 395, 541
BsoBI CYCGRG 2 cut(s) 44, 1032
Bsp1286I GDGCHC 4 cut(s) 126, 338, 469, 719
Bsp143I GATC 4 cut(s) 222, 276, 285, 421
BspACI CCGC 5 cut(s) 38, 51, 54, 83, 1116
BspANI GGCC 4 cut(s) 50, 210, 395, 541
BspCNI CTCAG 4 cut(s) 532, 549, 613, 792
BspFNI CGCG 1 cut(s) 1118
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 3 cut(s) 423, 716, 984
BspPI GGATC 2 cut(s) 416, 429
BspT107I GGYRCC 1 cut(s) 982
BsrBI CCGCTC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 396
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 1 cut(s) 868
BssAI RCCGGY 1 cut(s) 91
BssMI GATC 4 cut(s) 222, 276, 285, 421
BssSI CACGAG 1 cut(s) 909
Bst2BI CACGAG 1 cut(s) 909
Bst4CI ACNGT 4 cut(s) 196, 859, 1097, 1137
BstC8I GCNNGC 2 cut(s) 212, 1070
BstDEI CTNAG 7 cut(s) 273, 519, 536, 621, 732, 800, 1145
BstF5I GGATG 2 cut(s) 479, 758
BstFNI CGCG 1 cut(s) 1118
BstHHI GCGC 1 cut(s) 1009
BstKTI GATC 4 cut(s) 225, 279, 288, 424
BstMAI GTCTC 1 cut(s) 1034
BstMBI GATC 4 cut(s) 222, 276, 285, 421
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 1072
BstSCI CCNGG 4 cut(s) 151, 302, 717, 761
BstSFI CTRYAG 1 cut(s) 1096
BstSLI GKGCMC 2 cut(s) 338, 469
BstUI CGCG 1 cut(s) 1118
BstV1I GCAGC 2 cut(s) 538, 996
BstV2I GAAGAC 2 cut(s) 961, 991
BstX2I RGATCY 1 cut(s) 421
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 421
Bsu36I CCTNAGG 1 cut(s) 800
BsuRI GGCC 4 cut(s) 50, 210, 395, 541
BtsCI GGATG 2 cut(s) 479, 758
BtsI GCAGTG 3 cut(s) 329, 1002, 1079
BtsIMutI CAGTG 4 cut(s) 329, 861, 1002, 1079
Cac8I GCNNGC 2 cut(s) 212, 1070
CaiI CAGNNNCTG 1 cut(s) 863
CciI TCATGA 1 cut(s) 471
CfoI GCGC 1 cut(s) 1009
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 40, 309
Csp6I GTAC 1 cut(s) 1133
CviAII CATG 6 cut(s) 118, 202, 448, 472, 1027, 1069
CviQI GTAC 1 cut(s) 1133
DdeI CTNAG 7 cut(s) 273, 519, 536, 621, 732, 800, 1145
DpnI GATC 4 cut(s) 224, 278, 287, 423
DpnII GATC 4 cut(s) 222, 276, 285, 421
DriI GACNNNNNGTC 1 cut(s) 1047
EaeI YGGCCR 2 cut(s) 208, 393
Eam1105I GACNNNNNGTC 1 cut(s) 1047
Ecl136II GAGCTC 1 cut(s) 124
Eco147I AGGCCT 1 cut(s) 541
Eco24I GRGCYC 2 cut(s) 126, 719
Eco47I GGWCC 2 cut(s) 40, 309
Eco53kI GAGCTC 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 800
Eco88I CYCGRG 2 cut(s) 44, 1032
EcoICRI GAGCTC 1 cut(s) 124
EcoT38I GRGCYC 2 cut(s) 126, 719
FaeI CATG 6 cut(s) 121, 205, 451, 475, 1030, 1072
FaqI GGGAC 2 cut(s) 224, 1106
FatI CATG 6 cut(s) 117, 201, 447, 471, 1026, 1068
FauNDI CATATG 1 cut(s) 370
FblI GTMKAC 1 cut(s) 1099
Fnu4HI GCNGC 5 cut(s) 51, 54, 83, 552, 1010
FokI GGATG 2 cut(s) 466, 745
FriOI GRGCYC 2 cut(s) 126, 719
Fsp4HI GCNGC 5 cut(s) 51, 54, 83, 552, 1010
FspBI CTAG 6 cut(s) 650, 741, 947, 1016, 1022, 1192
GlaI GCGC 1 cut(s) 1008
GluI GCNGC 5 cut(s) 51, 54, 83, 552, 1010
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 792
HaeIII GGCC 4 cut(s) 50, 210, 395, 541
HapII CCGG 5 cut(s) 92, 152, 303, 719, 763
HhaI GCGC 1 cut(s) 1009
Hin1II CATG 6 cut(s) 121, 205, 451, 475, 1030, 1072
Hin6I GCGC 1 cut(s) 1007
HinP1I GCGC 1 cut(s) 1007
HinfI GANTC 6 cut(s) 61, 101, 435, 646, 903, 931
HpaII CCGG 5 cut(s) 92, 152, 303, 719, 763
HphI GGTGA 3 cut(s) 229, 364, 508
Hpy166II GTNNAC 4 cut(s) 28, 309, 467, 1100
Hpy188I TCNGA 6 cut(s) 60, 387, 622, 642, 822, 902
Hpy188III TCNNGA 8 cut(s) 472, 526, 573, 661, 771, 799, 871, 1034
Hpy8I GTNNAC 4 cut(s) 28, 309, 467, 1100
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 151, 357
HpyCH4III ACNGT 4 cut(s) 196, 859, 1097, 1137
HpyCH4IV ACGT 2 cut(s) 30, 314
HpyCH4V TGCA 5 cut(s) 17, 322, 467, 755, 1072
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 7 cut(s) 273, 519, 536, 621, 732, 800, 1145
HpySE526I ACGT 2 cut(s) 30, 314
Hsp92II CATG 6 cut(s) 121, 205, 451, 475, 1030, 1072
HspAI GCGC 1 cut(s) 1007
Kzo9I GATC 4 cut(s) 222, 276, 285, 421
LmnI GCTCC 4 cut(s) 121, 161, 559, 714
Lsp1109I GCAGC 2 cut(s) 538, 996
LweI GCATC 6 cut(s) 309, 368, 488, 731, 764, 876
MaeI CTAG 6 cut(s) 650, 741, 947, 1016, 1022, 1192
MaeII ACGT 2 cut(s) 30, 314
MaeIII GTNAC 5 cut(s) 727, 775, 859, 928, 937
MalI GATC 4 cut(s) 224, 278, 287, 423
MbiI CCGCTC 1 cut(s) 56
MboI GATC 4 cut(s) 222, 276, 285, 421
MboII GAAGA 4 cut(s) 354, 577, 961, 991
MfeI CAATTG 2 cut(s) 133, 879
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 4 cut(s) 126, 338, 469, 719
MlsI TGGCCA 2 cut(s) 210, 395
MluCI AATT 2 cut(s) 133, 879
MluNI TGGCCA 2 cut(s) 210, 395
MlyI GAGTC 2 cut(s) 897, 925
MmeI TCCRAC 2 cut(s) 692, 880
Mox20I TGGCCA 2 cut(s) 210, 395
MscI TGGCCA 2 cut(s) 210, 395
MslI CAYNNNNRTG 2 cut(s) 176, 317
Msp20I TGGCCA 2 cut(s) 210, 395
MspA1I CMGCKG 2 cut(s) 214, 493
MspI CCGG 5 cut(s) 92, 152, 303, 719, 763
MspR9I CCNGG 4 cut(s) 153, 304, 719, 763
MunI CAATTG 2 cut(s) 133, 879
Mva1269I GAATGC 1 cut(s) 19
MvnI CGCG 1 cut(s) 1118
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 4 cut(s) 153, 304, 719, 763
NdeI CATATG 1 cut(s) 370
NdeII GATC 4 cut(s) 222, 276, 285, 421
NlaIII CATG 6 cut(s) 121, 205, 451, 475, 1030, 1072
NlaIV GGNNCC 3 cut(s) 423, 716, 984
NmuCI GTSAC 4 cut(s) 775, 859, 928, 937
NspI RCATGY 1 cut(s) 1072
PaeI GCATGC 1 cut(s) 1072
PaeR7I CTCGAG 2 cut(s) 44, 1032
PagI TCATGA 1 cut(s) 471
PceI AGGCCT 1 cut(s) 541
PctI GAATGC 1 cut(s) 19
PfeI GAWTC 4 cut(s) 61, 101, 435, 646
PflFI GACNNNGTC 1 cut(s) 1022
PkrI GCNGC 5 cut(s) 52, 55, 84, 553, 1011
PleI GAGTC 2 cut(s) 897, 925
PpsI GAGTC 2 cut(s) 897, 925
Psp124BI GAGCTC 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 78
PspN4I GGNNCC 3 cut(s) 423, 716, 984
PspPI GGNCC 2 cut(s) 40, 309
PspXI VCTCGAGB 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 1 cut(s) 421
PsyI GACNNNGTC 1 cut(s) 1022
PvuII CAGCTG 2 cut(s) 214, 493
RsaI GTAC 1 cut(s) 1134
RsaNI GTAC 1 cut(s) 1133
RseI CAYNNNNRTG 2 cut(s) 176, 317
SacI GAGCTC 1 cut(s) 126
SatI GCNGC 5 cut(s) 51, 54, 83, 552, 1010
Sau3AI GATC 4 cut(s) 222, 276, 285, 421
Sau96I GGNCC 2 cut(s) 40, 309
SchI GAGTC 2 cut(s) 897, 925
ScrFI CCNGG 4 cut(s) 153, 304, 719, 763
SduI GDGCHC 4 cut(s) 126, 338, 469, 719
SfaNI GCATC 6 cut(s) 309, 368, 488, 731, 764, 876
SfcI CTRYAG 1 cut(s) 1096
Sfr274I CTCGAG 2 cut(s) 44, 1032
SinI GGWCC 2 cut(s) 40, 309
SlaI CTCGAG 2 cut(s) 44, 1032
SmiMI CAYNNNNRTG 2 cut(s) 176, 317
SmlI CTYRAG 2 cut(s) 44, 1032
SmoI CTYRAG 2 cut(s) 44, 1032
SpeI ACTAGT 1 cut(s) 946
SphI GCATGC 1 cut(s) 1072
Sse9I AATT 2 cut(s) 133, 879
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 5 cut(s) 38, 51, 54, 83, 1116
SspMI CTAG 6 cut(s) 650, 741, 947, 1016, 1022, 1192
SstI GAGCTC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 541
StyD4I CCNGG 4 cut(s) 151, 302, 717, 761
TaaI ACNGT 4 cut(s) 196, 859, 1097, 1137
TaiI ACGT 2 cut(s) 33, 317
TaqI TCGA 4 cut(s) 33, 45, 662, 1033
TasI AATT 2 cut(s) 133, 879
TauI GCSGC 3 cut(s) 53, 56, 85
TfiI GAWTC 4 cut(s) 61, 101, 435, 646
TscAI CASTG 4 cut(s) 329, 868, 1009, 1079
TseFI GTSAC 4 cut(s) 775, 859, 928, 937
TseI GCWGC 2 cut(s) 551, 1009
Tsp45I GTSAC 4 cut(s) 775, 859, 928, 937
TspDTI ATGAA 3 cut(s) 286, 354, 618
TspRI CASTG 4 cut(s) 329, 868, 1009, 1079
Tth111I GACNNNGTC 1 cut(s) 1022
VneI GTGCAC 1 cut(s) 465
VpaK11BI GGWCC 2 cut(s) 40, 309
XceI RCATGY 1 cut(s) 1072
XhoI CTCGAG 2 cut(s) 44, 1032
XmiI GTMKAC 1 cut(s) 1099
XspI CTAG 6 cut(s) 650, 741, 947, 1016, 1022, 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.