Rmu_sc0002247.1_g000012

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002247.1
OG0016756
Physical Location & Seq
Reverse (-)
62381 .. 63712
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002247.1_g000012.1.cds

Sequence Viewer

Length: 1332 bp
atgctaactttcctccatttgctcttctcctattccaccctttctttgtcctgcatttggcttcttttcattttaagtctttaccactattcctcccgtcccaaccccgtcttcctcctcgacttctcctgcttcaaaccagattctaaccaaaagtgcaacttgcaatcctcccaatccttcgtgcgccgcacaaatcgcttcaccgatgaaagcgaagaattcatgcgtaaaatcttcctcaaatccggtctaggagaagaaacctatgctccaaagttcgttttccaatccaaccccgaagccaagttagagtccgtcatggatgaaactcagcaaggcatgttctcagccgtgagctcactcctttccaaaaccggcatccagccatctctcatcaactccctgatcgtgacaagtggcagcttctctccggtaccctctctctcctcgctgatagtcaaccgttttaagctcaaacccgacgtaaaaacctacaatctaagtggcatggggtgtagctctggtgtgatatcaatcgatttagctgctaacttactaaagaagagcaaagagattggatacgccctggtggttataaacgagagtattagtttgaattggtattttggtgatagtcgtcccatgcttgtaaccaactgcatttttcgggttggttctgctgcggcgttgattaccaacgatccaagttgtcgccgagtcgcgaagatggaactcgttcaatctcttcgaactcaccacggagcaagcgaccgagcatataaagctgcatttcaagaggaagatgacaagggcaacctcggttttgctctgaccaaagatttgattccggttgcaggggcctatttacgtgaacacatcaagattctggctccccgagttctaccactgaatcaacttgctatgtacgcctactcggtcatttgttctgcagcaacatcggggaagaacagcaagttcaaaccaatattcgttccggatttcaccacggcttttgaccatttttgtatccataccggtgggaaagcggtgatcgagcaggtggcgcgggttctgcgactgagtgacgtgttgactgaaccggctcggatgagtttgcaccgatttgggaacacttccagtagtctagtgttctatgagttggcttattttgaagccaaacggagaattaaaaaaggagatagggtgtggatgttggcgtttgggactggttttaaggttgggagtcttgtttggaagtcactttcggatttaggtcaacagagtgacaatccatgggatgattgcattcataactacccattaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

443

Amino Acids

49.48

Weight (kDa)

9.12

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016756)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12940
malus_domestica MD10G1036400.v1.1
prunus_persica Prupe.8G042200_v2.0.a1
pyrus_communis pycom05g02490 pycom10g02490
rosa_chinensis RchiOBHm_Chr6g0274011
rosa_laevigata RLG00000013584
rosa_multiflora Rmu_sc0002247.1_g000012
rosa_rugosa Rorug06G0078400
rosa_samantha Rh6AG193900 Rh6BG197500 Rh6CG197600 Rh6DG189300
rosa_wichuraiana Rw6G016910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AarI CACCTGC 1 cut(s) 1051
Acc36I ACCTGC 1 cut(s) 1051
Acc65I GGTACC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 436
AccII CGCG 2 cut(s) 725, 1069
AccIII TCCGGA 1 cut(s) 997
AciI CCGC 4 cut(s) 190, 686, 1049, 1069
AclWI GGATC 1 cut(s) 698
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 2 cut(s) 438, 929
AfiI CCNNNNNNNGG 2 cut(s) 57, 857
AflIII ACRYGT 1 cut(s) 1089
AgeI ACCGGT 1 cut(s) 1037
AgsI TTSAA 6 cut(s) 136, 619, 743, 797, 982, 1175
AjiI CACGTC 1 cut(s) 1090
AjnI CCWGG 1 cut(s) 588
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 6 cut(s) 360, 426, 475, 522, 548, 788
AluI AGCT 6 cut(s) 360, 426, 475, 522, 548, 788
Alw21I GWGCWC 1 cut(s) 362
AlwI GGATC 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 897
Aor13HI TCCGGA 1 cut(s) 997
AoxI GGCC 1 cut(s) 861
ApeKI GCWGC 5 cut(s) 423, 548, 683, 788, 953
ApoI RAATTY 1 cut(s) 221
ArsI GACNNNNNNTTYG 2 cut(s) 826, 858
AsiGI ACCGGT 1 cut(s) 1037
Asp700I GAANNNNTTC 1 cut(s) 738
Asp718I GGTACC 1 cut(s) 436
AspLEI GCGC 2 cut(s) 189, 1069
AspS9I GGNCC 1 cut(s) 861
AsuHPI GGTGA 5 cut(s) 196, 644, 749, 997, 1063
AsuII TTCGAA 1 cut(s) 751
AvaI CYCGRG 1 cut(s) 897
BanI GGYRCC 1 cut(s) 436
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 362
BbvI GCAGC 5 cut(s) 435, 535, 670, 775, 965
BccI CCATC 2 cut(s) 397, 724
BceAI ACGGC 2 cut(s) 338, 1026
BcgI CGANNNNNNTGC 4 cut(s) 530, 564, 942, 976
BciT130I CCWGG 1 cut(s) 590
BciVI GTATCC 2 cut(s) 575, 1040
BfaI CTAG 2 cut(s) 254, 1148
BfmI CTRYAG 1 cut(s) 951
BfuAI ACCTGC 1 cut(s) 1051
BfuI GTATCC 2 cut(s) 575, 1040
BisI GCNGC 7 cut(s) 190, 424, 549, 684, 687, 789, 954
BlsI GCNGC 7 cut(s) 191, 425, 550, 685, 688, 790, 955
Bme1390I CCNGG 1 cut(s) 590
BmeT110I CYCGRG 1 cut(s) 897
BmgBI CACGTC 1 cut(s) 1090
BmgT120I GGNCC 1 cut(s) 861
BmiI GGNNCC 3 cut(s) 438, 862, 894
BmrFI CCNGG 1 cut(s) 590
BmsI GCATC 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 103
Bpu14I TTCGAA 1 cut(s) 751
Bsa29I ATCGAT 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 872
BsaBI GATNNNNATC 1 cut(s) 536
BsaJI CCNNGG 5 cut(s) 588, 760, 820, 1008, 1295
BsaWI WCCGGW 5 cut(s) 248, 433, 850, 997, 1037
BsaXI ACNNNNNCTCC 6 cut(s) 77, 107, 256, 286, 1191, 1221
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 857
Bse118I RCCGGY 3 cut(s) 377, 1037, 1102
Bse1I ACTGG 2 cut(s) 1140, 1234
Bse8I GATNNNNATC 1 cut(s) 536
BseAI TCCGGA 1 cut(s) 997
BseBI CCWGG 1 cut(s) 590
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 5 cut(s) 588, 760, 820, 1008, 1295
BseGI GGATG 5 cut(s) 331, 381, 1116, 1218, 1306
BseJI GATNNNNATC 1 cut(s) 536
BseLI CCNNNNNNNGG 2 cut(s) 57, 857
BseMII CTCAG 3 cut(s) 347, 363, 1073
BseNI ACTGG 2 cut(s) 1140, 1234
BseRI GAGGAG 2 cut(s) 107, 439
BseXI GCAGC 5 cut(s) 435, 535, 670, 775, 965
Bsh1236I CGCG 2 cut(s) 725, 1069
Bsh1285I CGRYCG 1 cut(s) 775
BshFI GGCC 1 cut(s) 863
BshNI GGYRCC 1 cut(s) 436
BshTI ACCGGT 1 cut(s) 1037
BshVI ATCGAT 1 cut(s) 540
BsiEI CGRYCG 1 cut(s) 775
BsiHKAI GWGCWC 1 cut(s) 362
BsiHKCI CYCGRG 1 cut(s) 897
BsiSI CCGG 7 cut(s) 249, 378, 434, 851, 998, 1038, 1103
BslFI GGGAC 3 cut(s) 84, 627, 1240
BslI CCNNNNNNNGG 2 cut(s) 57, 857
BsmFI GGGAC 3 cut(s) 84, 627, 1240
BsmI GAATGC 1 cut(s) 1308
BsnI GGCC 1 cut(s) 863
BsoBI CYCGRG 1 cut(s) 897
Bsp119I TTCGAA 1 cut(s) 751
Bsp1286I GDGCHC 1 cut(s) 362
Bsp13I TCCGGA 1 cut(s) 997
Bsp143I GATC 3 cut(s) 408, 703, 1053
Bsp19I CCATGG 1 cut(s) 1295
Bsp68I TCGCGA 1 cut(s) 725
BspACI CCGC 4 cut(s) 190, 686, 1049, 1069
BspANI GGCC 1 cut(s) 863
BspCNI CTCAG 3 cut(s) 346, 362, 1074
BspDI ATCGAT 1 cut(s) 540
BspEI TCCGGA 1 cut(s) 997
BspFNI CGCG 2 cut(s) 725, 1069
BspLI GGNNCC 3 cut(s) 438, 862, 894
BspMAI CTGCAG 1 cut(s) 955
BspMI ACCTGC 1 cut(s) 1051
BspPI GGATC 1 cut(s) 698
BspQI GCTCTTC 2 cut(s) 29, 560
BspT104I TTCGAA 1 cut(s) 751
BspT107I GGYRCC 1 cut(s) 436
BsrFI RCCGGY 3 cut(s) 377, 1037, 1102
BsrI ACTGG 2 cut(s) 1140, 1234
BssAI RCCGGY 3 cut(s) 377, 1037, 1102
BssECI CCNNGG 5 cut(s) 588, 760, 820, 1008, 1295
BssMI GATC 3 cut(s) 408, 703, 1053
BssT1I CCWWGG 1 cut(s) 1295
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 3 cut(s) 29, 560, 753
BstBAI YACGTR 1 cut(s) 872
BstBI TTCGAA 1 cut(s) 751
BstC8I GCNNGC 1 cut(s) 769
BstDEI CTNAG 4 cut(s) 333, 349, 503, 1082
BstDSI CCRYGG 3 cut(s) 760, 1008, 1295
BstF5I GGATG 5 cut(s) 331, 381, 1116, 1218, 1306
BstFNI CGCG 2 cut(s) 725, 1069
BstHHI GCGC 2 cut(s) 189, 1069
BstKTI GATC 3 cut(s) 411, 706, 1056
BstMBI GATC 3 cut(s) 408, 703, 1053
BstMCI CGRYCG 1 cut(s) 775
BstMWI GCNNNNNNNGC 5 cut(s) 198, 785, 929, 1066, 1075
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 588
BstSFI CTRYAG 1 cut(s) 951
BstUI CGCG 2 cut(s) 725, 1069
BstV1I GCAGC 5 cut(s) 435, 535, 670, 775, 965
BstV2I GAAGAC 1 cut(s) 103
BstXI CCANNNNNNTGG 1 cut(s) 1040
Bsu15I ATCGAT 1 cut(s) 540
BsuI GTATCC 2 cut(s) 575, 1040
BsuRI GGCC 1 cut(s) 863
BsuTUI ATCGAT 1 cut(s) 540
BtgI CCRYGG 3 cut(s) 760, 1008, 1295
BtrI CACGTC 1 cut(s) 1090
BtsCI GGATG 5 cut(s) 331, 381, 1116, 1218, 1306
BtsIMutI CAGTG 1 cut(s) 908
BtuMI TCGCGA 1 cut(s) 725
BveI ACCTGC 1 cut(s) 1051
Cac8I GCNNGC 1 cut(s) 769
CfoI GCGC 2 cut(s) 189, 1069
Cfr10I RCCGGY 3 cut(s) 377, 1037, 1102
Cfr13I GGNCC 1 cut(s) 861
ClaI ATCGAT 1 cut(s) 540
Csp6I GTAC 2 cut(s) 437, 928
CspAI ACCGGT 1 cut(s) 1037
CspCI CAANNNNNGTGG 4 cut(s) 487, 522, 997, 1032
CviAII CATG 6 cut(s) 226, 322, 343, 511, 646, 1296
CviQI GTAC 2 cut(s) 437, 928
DdeI CTNAG 4 cut(s) 333, 349, 503, 1082
DpnI GATC 3 cut(s) 410, 705, 1055
DpnII GATC 3 cut(s) 408, 703, 1053
Eam1104I CTCTTC 3 cut(s) 29, 560, 753
EarI CTCTTC 3 cut(s) 29, 560, 753
Ecl136II GAGCTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 1295
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 897
EcoICRI GAGCTC 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 861
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 588
EcoRV GATATC 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 1295
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 1295
FaeI CATG 6 cut(s) 229, 325, 346, 514, 649, 1299
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 3 cut(s) 84, 627, 1240
FatI CATG 6 cut(s) 225, 321, 342, 510, 645, 1295
FauI CCCGC 1 cut(s) 1062
Fnu4HI GCNGC 7 cut(s) 190, 424, 549, 684, 687, 789, 954
FokI GGATG 5 cut(s) 338, 368, 1123, 1225, 1313
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 7 cut(s) 190, 424, 549, 684, 687, 789, 954
FspBI CTAG 2 cut(s) 254, 1148
GlaI GCGC 2 cut(s) 188, 1068
GluI GCNGC 7 cut(s) 190, 424, 549, 684, 687, 789, 954
HaeIII GGCC 1 cut(s) 863
HapII CCGG 7 cut(s) 249, 378, 434, 851, 998, 1038, 1103
HhaI GCGC 2 cut(s) 189, 1069
Hin1II CATG 6 cut(s) 229, 325, 346, 514, 649, 1299
Hin6I GCGC 2 cut(s) 187, 1067
HinP1I GCGC 2 cut(s) 187, 1067
HincII GTYRAC 3 cut(s) 463, 1095, 1280
HindII GTYRAC 3 cut(s) 463, 1095, 1280
HinfI GANTC 7 cut(s) 143, 314, 720, 847, 886, 913, 1246
HpaII CCGG 7 cut(s) 249, 378, 434, 851, 998, 1038, 1103
HphI GGTGA 5 cut(s) 196, 644, 749, 997, 1063
Hpy166II GTNNAC 4 cut(s) 463, 875, 1095, 1280
Hpy188I TCNGA 3 cut(s) 834, 1110, 1270
Hpy188III TCNNGA 5 cut(s) 412, 724, 797, 883, 998
Hpy8I GTNNAC 4 cut(s) 463, 875, 1095, 1280
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4IV ACGT 3 cut(s) 486, 871, 1089
HpyCH4V TGCA 9 cut(s) 54, 159, 166, 663, 791, 857, 953, 1120, 1308
HpyF10VI GCNNNNNNNGC 5 cut(s) 198, 785, 929, 1066, 1075
HpyF3I CTNAG 4 cut(s) 333, 349, 503, 1082
HpySE526I ACGT 3 cut(s) 486, 871, 1089
Hsp92II CATG 6 cut(s) 229, 325, 346, 514, 649, 1299
HspAI GCGC 2 cut(s) 187, 1067
Kpn2I TCCGGA 1 cut(s) 997
KpnI GGTACC 1 cut(s) 440
Kzo9I GATC 3 cut(s) 408, 703, 1053
LguI GCTCTTC 2 cut(s) 29, 560
LmnI GCTCC 3 cut(s) 277, 764, 898
Lsp1109I GCAGC 5 cut(s) 435, 535, 670, 775, 965
LweI GCATC 1 cut(s) 390
MaeI CTAG 2 cut(s) 254, 1148
MaeII ACGT 3 cut(s) 486, 871, 1089
MaeIII GTNAC 5 cut(s) 412, 652, 1085, 1260, 1286
MalI GATC 3 cut(s) 410, 705, 1055
MboI GATC 3 cut(s) 408, 703, 1053
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 3 cut(s) 221, 619, 1188
MlyI GAGTC 3 cut(s) 323, 729, 1255
MmeI TCCRAC 1 cut(s) 318
MroI TCCGGA 1 cut(s) 997
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 5 cut(s) 74, 471, 1191, 1236, 1325
MslI CAYNNNNRTG 1 cut(s) 1038
MspI CCGG 7 cut(s) 249, 378, 434, 851, 998, 1038, 1103
MspR9I CCNGG 1 cut(s) 590
Mva1269I GAATGC 1 cut(s) 1308
MvaI CCWGG 1 cut(s) 590
MvnI CGCG 2 cut(s) 725, 1069
MwoI GCNNNNNNNGC 5 cut(s) 198, 785, 929, 1066, 1075
NcoI CCATGG 1 cut(s) 1295
NdeII GATC 3 cut(s) 408, 703, 1053
NlaIII CATG 6 cut(s) 229, 325, 346, 514, 649, 1299
NlaIV GGNNCC 3 cut(s) 438, 862, 894
NmeAIII GCCGAG 1 cut(s) 743
NmuCI GTSAC 4 cut(s) 412, 1085, 1260, 1286
NruI TCGCGA 1 cut(s) 725
NspI RCATGY 1 cut(s) 346
NspV TTCGAA 1 cut(s) 751
PaqCI CACCTGC 1 cut(s) 1051
PciSI GCTCTTC 2 cut(s) 29, 560
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PctI GAATGC 1 cut(s) 1308
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 4 cut(s) 143, 847, 886, 913
PinAI ACCGGT 1 cut(s) 1037
PkrI GCNGC 7 cut(s) 191, 425, 550, 685, 688, 790, 955
PleI GAGTC 3 cut(s) 322, 728, 1254
PpsI GAGTC 3 cut(s) 322, 728, 1254
Ppu21I YACGTR 1 cut(s) 872
PsiI TTATAA 1 cut(s) 599
Psp124BI GAGCTC 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 438, 862, 894
PspPI GGNCC 1 cut(s) 861
PstI CTGCAG 1 cut(s) 955
RruI TCGCGA 1 cut(s) 725
RsaI GTAC 2 cut(s) 438, 929
RsaNI GTAC 2 cut(s) 437, 928
RseI CAYNNNNRTG 1 cut(s) 1038
SacI GAGCTC 1 cut(s) 362
SapI GCTCTTC 2 cut(s) 29, 560
SaqAI TTAA 5 cut(s) 74, 471, 1191, 1236, 1325
SatI GCNGC 7 cut(s) 190, 424, 549, 684, 687, 789, 954
Sau3AI GATC 3 cut(s) 408, 703, 1053
Sau96I GGNCC 1 cut(s) 861
SchI GAGTC 3 cut(s) 323, 729, 1255
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 1 cut(s) 362
SfaNI GCATC 1 cut(s) 390
SfcI CTRYAG 1 cut(s) 951
SfuI TTCGAA 1 cut(s) 751
SmiMI CAYNNNNRTG 1 cut(s) 1038
Sse9I AATT 3 cut(s) 221, 619, 1188
SsiI CCGC 4 cut(s) 190, 686, 1049, 1069
SspI AATATT 1 cut(s) 990
SspMI CTAG 2 cut(s) 254, 1148
SstI GAGCTC 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 588
StyI CCWWGG 1 cut(s) 1295
TaaI ACNGT 1 cut(s) 467
TaiI ACGT 3 cut(s) 489, 874, 1092
TaqI TCGA 4 cut(s) 120, 540, 751, 1056
TaqII GACCGA 2 cut(s) 789, 928
TasI AATT 3 cut(s) 221, 619, 1188
TauI GCSGC 2 cut(s) 192, 689
TfiI GAWTC 4 cut(s) 143, 847, 886, 913
Tru1I TTAA 5 cut(s) 74, 471, 1191, 1236, 1325
Tru9I TTAA 5 cut(s) 74, 471, 1191, 1236, 1325
TscAI CASTG 1 cut(s) 915
TseFI GTSAC 4 cut(s) 412, 1085, 1260, 1286
TseI GCWGC 5 cut(s) 423, 548, 683, 788, 953
Tsp45I GTSAC 4 cut(s) 412, 1085, 1260, 1286
TspDTI ATGAA 5 cut(s) 58, 214, 225, 342, 1301
TspGWI ACGGA 3 cut(s) 307, 777, 1198
TspRI CASTG 1 cut(s) 915
XapI RAATTY 1 cut(s) 221
XceI RCATGY 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 2 cut(s) 254, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.