Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002283.1

Orthogroup ID

OG0018506

Physical Location & Seq

Genomic Coordinates Reverse (-)

19324 .. 20265

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002283.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgatcaatgcgagcatggttatgtgcgaaaggcattatggtggaattaactaccctgttggtggtattgggggaattgcaaagtccttggcaaaaggtctggtggaacatggcagtgagatactttacaaggccaatgttactggcatcatagtcgatcagggcagagctgtaggagttaggctttcagacaggagggaattttttgccaaagccatattatcaaatgctacgagatggagtacctttggaaagctgctaaaagaagacgaccttcctaaagaagaggaaagatttcagaaagtttatgttaagtccccatcttttctttccattcacatgggtgttaaatctgaggctctgcctccagatacagattgccaccactttgtgcttgaggacgattggacaaggttagaggagccatatggaagtttattcgtaagtattccaactgttcttgattcatcgttggctccagaagggcaccatattcttcacatatttacgacctcttccattgaagactgggagggactctctcgaaaggactatgaatcaaagaaggagcttatggcagatgtgatcattagcagattagagaagatactatatccagggctcaagtcatccatcgtttttaaggaggtgggaacacctaagacacacaggcggtacctggctcgtgaacagggcacttatggaccaataccatgcggaactcccaagggcttattgggactgccattgaatacaacagccatagaaggcctttactgtgttggtgatagctgctttccgggacaaggagttagtgctgtatccttctcaggactaatgtgtgctcatcgagtagctgctgatataggccttgagaagaagtccccaatattggatgctgcccttcttcgactatatcgatggctaaggacattagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

313

Amino Acids

34.58

Weight (kDa)

7.14

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018506)

Species	Orthologous Gene IDs
malus_domestica	MD12G1045700.v1.1
rosa_multiflora	Rmu_sc0002283.1_g000006 Rmu_sc0006369.1_g000009
rosa_roxburghii	Rroxscaffold_6G00404720
rosa_rugosa	Rorug02G0199400 Rorug04G0032700 Rorug05G0069800 Rorug06G0386200 Rorug07G0081500
rosa_samantha	Rh2CG259800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	675
AccB1I	GGYRCC	2 cut(s)	486, 675
AciI	CCGC	2 cut(s)	673, 717
AcsI	RAATTY	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	2 cut(s)	244, 677
AfiI	CCNNNNNNNGG	3 cut(s)	62, 806, 892
AgsI	TTSAA	2 cut(s)	524, 751
AjnI	CCWGG	2 cut(s)	616, 678
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	5 cut(s)	170, 256, 571, 792, 857
AluI	AGCT	5 cut(s)	170, 256, 571, 792, 857
Alw21I	GWGCWC	1 cut(s)	847
AoxI	GGCC	3 cut(s)	132, 769, 868
ApeKI	GCWGC	4 cut(s)	256, 792, 857, 899
ApoI	RAATTY	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	294
Asp718I	GGTACC	1 cut(s)	675
AspS9I	GGNCC	1 cut(s)	704
AsuC2I	CCSGG	1 cut(s)	801
AsuHPI	GGTGA	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	704
BaeGI	GKGCMC	2 cut(s)	489, 698
BanI	GGYRCC	2 cut(s)	486, 675
BanII	GRGCYC	1 cut(s)	624
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	2 cut(s)	273, 531
Bbv12I	GWGCWC	1 cut(s)	847
BbvI	GCAGC	4 cut(s)	243, 779, 844, 886
BccI	CCATC	4 cut(s)	231, 328, 641, 915
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BciT130I	CCWGG	2 cut(s)	618, 680
BciVI	GTATCC	1 cut(s)	832
BclI	TGATCA	2 cut(s)	3, 585
BcnI	CCSGG	1 cut(s)	801
BfmI	CTRYAG	1 cut(s)	171
BfuI	GTATCC	1 cut(s)	832
BisI	GCNGC	4 cut(s)	257, 793, 858, 900
BlsI	GCNGC	4 cut(s)	258, 794, 859, 901
Bme1390I	CCNGG	3 cut(s)	618, 680, 801
Bme18I	GGWCC	1 cut(s)	704
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	4 cut(s)	423, 477, 488, 677
BmrFI	CCNGG	3 cut(s)	618, 680, 801
BmrI	ACTGGG	1 cut(s)	538
BmsI	GCATC	2 cut(s)	156, 886
BmuI	ACTGGG	1 cut(s)	538
BpiI	GAAGAC	2 cut(s)	273, 531
BplI	GAGNNNNNCTC	2 cut(s)	524, 556
BpmI	CTGGAG	2 cut(s)	351, 462
Bpu10I	CCTNAGC	1 cut(s)	926
BpuEI	CTTGAG	3 cut(s)	416, 608, 893
BpuMI	CCSGG	1 cut(s)	801
Bsa29I	ATCGAT	1 cut(s)	919
BsaJI	CCNNGG	3 cut(s)	87, 617, 726
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 806, 892
Bse1I	ACTGG	2 cut(s)	148, 533
BseBI	CCWGG	2 cut(s)	618, 680
BseCI	ATCGAT	1 cut(s)	919
BseDI	CCNNGG	3 cut(s)	87, 617, 726
BseGI	GGATG	2 cut(s)	629, 901
BseLI	CCNNNNNNNGG	3 cut(s)	62, 806, 892
BseMII	CTCAG	2 cut(s)	345, 843
BseNI	ACTGG	2 cut(s)	148, 533
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	2 cut(s)	489, 698
BseXI	GCAGC	4 cut(s)	243, 779, 844, 886
BshFI	GGCC	3 cut(s)	134, 771, 870
BshNI	GGYRCC	2 cut(s)	486, 675
BshVI	ATCGAT	1 cut(s)	919
BsiHKAI	GWGCWC	1 cut(s)	847
BsiSI	CCGG	1 cut(s)	800
BslFI	GGGAC	5 cut(s)	301, 549, 753, 816, 868
BslI	CCNNNNNNNGG	3 cut(s)	62, 806, 892
BsmFI	GGGAC	5 cut(s)	301, 549, 753, 816, 868
BsnI	GGCC	3 cut(s)	134, 771, 870
Bsp1286I	GDGCHC	4 cut(s)	489, 624, 698, 847
Bsp143I	GATC	3 cut(s)	3, 157, 585
BspACI	CCGC	2 cut(s)	673, 717
BspANI	GGCC	3 cut(s)	134, 771, 870
BspCNI	CTCAG	2 cut(s)	346, 842
BspDI	ATCGAT	1 cut(s)	919
BspLI	GGNNCC	4 cut(s)	423, 477, 488, 677
BspT107I	GGYRCC	2 cut(s)	486, 675
BsrI	ACTGG	2 cut(s)	148, 533
BssECI	CCNNGG	3 cut(s)	87, 617, 726
BssMI	GATC	3 cut(s)	3, 157, 585
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	2 cut(s)	87, 726
Bst2BI	CACGAG	1 cut(s)	684
Bst2UI	CCWGG	2 cut(s)	618, 680
Bst4CI	ACNGT	2 cut(s)	457, 779
Bst6I	CTCTTC	2 cut(s)	279, 520
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	4 cut(s)	354, 660, 829, 926
BstF5I	GGATG	2 cut(s)	629, 901
BstKTI	GATC	3 cut(s)	6, 160, 588
BstMBI	GATC	3 cut(s)	3, 157, 585
BstNI	CCWGG	2 cut(s)	618, 680
BstSCI	CCNGG	3 cut(s)	616, 678, 799
BstSFI	CTRYAG	1 cut(s)	171
BstSLI	GKGCMC	2 cut(s)	489, 698
BstV1I	GCAGC	4 cut(s)	243, 779, 844, 886
BstV2I	GAAGAC	2 cut(s)	273, 531
BstXI	CCANNNNNNTGG	1 cut(s)	340
Bsu15I	ATCGAT	1 cut(s)	919
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	3 cut(s)	134, 771, 870
BsuTUI	ATCGAT	1 cut(s)	919
BtsCI	GGATG	2 cut(s)	629, 901
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	704
ClaI	ATCGAT	1 cut(s)	919
Csp6I	GTAC	2 cut(s)	243, 676
CviAII	CATG	4 cut(s)	16, 110, 340, 714
CviQI	GTAC	2 cut(s)	243, 676
DdeI	CTNAG	4 cut(s)	354, 660, 829, 926
DpnI	GATC	3 cut(s)	5, 159, 587
DpnII	GATC	3 cut(s)	3, 157, 585
DraIII	CACNNNGTG	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	279, 520
EarI	CTCTTC	2 cut(s)	279, 520
Eco130I	CCWWGG	2 cut(s)	87, 726
Eco147I	AGGCCT	2 cut(s)	771, 870
Eco24I	GRGCYC	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	704
EcoRII	CCWGG	2 cut(s)	616, 678
EcoT14I	CCWWGG	2 cut(s)	87, 726
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	2 cut(s)	87, 726
FaeI	CATG	4 cut(s)	19, 113, 343, 717
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FaqI	GGGAC	5 cut(s)	301, 549, 753, 816, 868
FatI	CATG	4 cut(s)	15, 109, 339, 713
FauNDI	CATATG	1 cut(s)	427
FbaI	TGATCA	2 cut(s)	3, 585
Fnu4HI	GCNGC	4 cut(s)	257, 793, 858, 900
FokI	GGATG	2 cut(s)	616, 908
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	4 cut(s)	257, 793, 858, 900
GluI	GCNGC	4 cut(s)	257, 793, 858, 900
GsuI	CTGGAG	2 cut(s)	351, 462
HaeIII	GGCC	3 cut(s)	134, 771, 870
HapII	CCGG	1 cut(s)	800
Hin1II	CATG	4 cut(s)	19, 113, 343, 717
HinfI	GANTC	3 cut(s)	464, 537, 557
HpaII	CCGG	1 cut(s)	800
HphI	GGTGA	1 cut(s)	797
Hpy166II	GTNNAC	1 cut(s)	689
Hpy188I	TCNGA	3 cut(s)	190, 300, 355
Hpy188III	TCNNGA	6 cut(s)	368, 461, 479, 543, 686, 831
Hpy8I	GTNNAC	1 cut(s)	689
HpyAV	CCTTC	6 cut(s)	284, 476, 559, 761, 835, 914
HpyCH4III	ACNGT	2 cut(s)	457, 779
HpyCH4V	TGCA	1 cut(s)	80
HpyF3I	CTNAG	4 cut(s)	354, 660, 829, 926
Hsp92II	CATG	4 cut(s)	19, 113, 343, 717
KpnI	GGTACC	1 cut(s)	679
Ksp22I	TGATCA	2 cut(s)	3, 585
Kzo9I	GATC	3 cut(s)	3, 157, 585
LmnI	GCTCC	3 cut(s)	421, 481, 568
Lsp1109I	GCAGC	4 cut(s)	243, 779, 844, 886
LweI	GCATC	2 cut(s)	156, 886
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	5, 159, 587
MboI	GATC	3 cut(s)	3, 157, 585
MboII	GAAGA	8 cut(s)	278, 296, 488, 507, 536, 616, 889, 899
MhlI	GDGCHC	4 cut(s)	489, 624, 698, 847
MluCI	AATT	3 cut(s)	45, 75, 200
MlyI	GAGTC	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	9 cut(s)	189, 280, 349, 375, 391, 412, 523, 526, 640
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	4 cut(s)	48, 312, 348, 642
MslI	CAYNNNNRTG	6 cut(s)	20, 39, 114, 338, 342, 937
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	3 cut(s)	618, 680, 801
MvaI	CCWGG	2 cut(s)	618, 680
NciI	CCSGG	1 cut(s)	801
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	3 cut(s)	3, 157, 585
NlaIII	CATG	4 cut(s)	19, 113, 343, 717
NlaIV	GGNNCC	4 cut(s)	423, 477, 488, 677
OliI	CACNNNNGTG	1 cut(s)	342
PceI	AGGCCT	2 cut(s)	771, 870
PcsI	WCGNNNNNNNCGW	1 cut(s)	916
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	464, 557
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	4 cut(s)	258, 794, 859, 901
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	616, 678
PspGI	CCWGG	2 cut(s)	616, 678
PspN4I	GGNNCC	4 cut(s)	423, 477, 488, 677
PspPI	GGNCC	1 cut(s)	704
RsaI	GTAC	2 cut(s)	244, 677
RsaNI	GTAC	2 cut(s)	243, 676
RseI	CAYNNNNRTG	6 cut(s)	20, 39, 114, 338, 342, 937
SaqAI	TTAA	4 cut(s)	48, 312, 348, 642
SatI	GCNGC	4 cut(s)	257, 793, 858, 900
Sau3AI	GATC	3 cut(s)	3, 157, 585
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	3 cut(s)	618, 680, 801
SduI	GDGCHC	4 cut(s)	489, 624, 698, 847
SfaNI	GCATC	2 cut(s)	156, 886
SfcI	CTRYAG	1 cut(s)	171
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	6 cut(s)	20, 39, 114, 338, 342, 937
SmlI	CTYRAG	3 cut(s)	395, 623, 872
SmoI	CTYRAG	3 cut(s)	395, 623, 872
Sse9I	AATT	3 cut(s)	45, 75, 200
SseBI	AGGCCT	2 cut(s)	771, 870
SsiI	CCGC	2 cut(s)	673, 717
SspI	AATATT	1 cut(s)	891
StuI	AGGCCT	2 cut(s)	771, 870
StyD4I	CCNGG	3 cut(s)	616, 678, 799
StyI	CCWWGG	2 cut(s)	87, 726
TaaI	ACNGT	2 cut(s)	457, 779
TaqI	TCGA	5 cut(s)	156, 544, 850, 910, 919
TasI	AATT	3 cut(s)	45, 75, 200
TfiI	GAWTC	2 cut(s)	464, 557
Tru1I	TTAA	4 cut(s)	48, 312, 348, 642
Tru9I	TTAA	4 cut(s)	48, 312, 348, 642
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	4 cut(s)	256, 792, 857, 899
TspDTI	ATGAA	2 cut(s)	456, 570
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.