Rorug04G0032700

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008412
Physical Location & Seq
Reverse (-)
4840451 .. 4841521
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0032700.1

Sequence Viewer

Length: 528 bp
ATGTATCTCAAAGTAGAGTTACGCTGGAGTGTTGTAGTCCCTCCCAAAAGCCTGGACAAAGATGGAGTGAAATTCCAAACGGAATTGTCTCGCCGCTTGCTGGATGATTTTGCTACAAAAAGGGCAACAAAAGATCTGGGATACTTCCTGGCGGTGACGACTGTGGAGAGCATAGGAGAAGGAAAGGTGAGGCCGGACACCGGTGAAGTTAAGTTTCCGGTTGTTTTCAGCTGCATCACCTTCAAGCTTTTCCGCGGAGAGATCATAGATGCGGTTGTTTACAAGGTATTGAGGCACGGAGTTTGTCTGAGATGCGGTCCTGTCGAAAAGGTGTTTCTCTCTGCTAACAAGATACCGGATTATCAATATATCCCTAGAGAGGATGATTCTGTGTTCTTAAACCAAGAGAAGCCGTACTCTGGGATTGGAAAAGATGTCACAATTCGTTGCGTTGTCATTGGGACTCGATGGGTTGAAGCAGAAAGGGAATTCTGCGTACTGGTTGATTTGCCGAATGAGAATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

175

Amino Acids

19.94

Weight (kDa)

7.57

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHS2_Rpb7-N PF03876 13 - 68 1.6e-06 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 255
AciI CCGC 6 cut(s) 94, 152, 253, 255, 272, 315
AcsI RAATTY 2 cut(s) 71, 488
AfaI GTAC 2 cut(s) 416, 498
AfiI CCNNNNNNNGG 4 cut(s) 100, 200, 379, 419
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 2 cut(s) 244, 476
AjnI CCWGG 2 cut(s) 51, 147
AluBI AGCT 2 cut(s) 231, 247
AluI AGCT 2 cut(s) 231, 247
Alw26I GTCTC 1 cut(s) 93
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 2 cut(s) 71, 488
AsiGI ACCGGT 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 4 cut(s) 166, 199, 215, 229
AvaII GGWCC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 218
BccI CCATC 2 cut(s) 56, 462
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 53, 149
BciVI GTATCC 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 2 cut(s) 375, 526
BfuI GTATCC 1 cut(s) 134
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 94, 232
BlsI GCNGC 2 cut(s) 95, 233
Bme1390I CCNGG 2 cut(s) 53, 149
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmrFI CCNGG 2 cut(s) 53, 149
BmsI GCATC 3 cut(s) 243, 259, 302
BpmI CTGGAG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 3 cut(s) 200, 217, 355
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 200, 379, 419
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 504
BseBI CCWGG 2 cut(s) 53, 149
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 2 cut(s) 109, 388
BseLI CCNNNNNNNGG 4 cut(s) 100, 200, 379, 419
BseMII CTCAG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 504
BseXI GCAGC 1 cut(s) 218
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 193
BshTI ACCGGT 1 cut(s) 200
BsiSI CCGG 4 cut(s) 194, 201, 218, 356
BslFI GGGAC 2 cut(s) 23, 475
BslI CCNNNNNNNGG 4 cut(s) 100, 200, 379, 419
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 2 cut(s) 23, 475
BsnI GGCC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 133, 261
BspACI CCGC 6 cut(s) 94, 152, 253, 255, 272, 315
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 300
BspFNI CGCG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 1 cut(s) 504
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 2 cut(s) 133, 261
Bst2UI CCWGG 2 cut(s) 53, 149
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 308
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 2 cut(s) 109, 388
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 2 cut(s) 136, 264
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 133, 261
BstNI CCWGG 2 cut(s) 53, 149
BstSCI CCNGG 2 cut(s) 51, 147
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 1 cut(s) 133
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 2 cut(s) 109, 388
Cac8I GCNNGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 317
Cfr42I CCGCGG 1 cut(s) 256
Csp6I GTAC 2 cut(s) 415, 497
CspAI ACCGGT 1 cut(s) 200
CviJI RGCY 5 cut(s) 51, 193, 231, 247, 412
CviKI_1 RGCY 5 cut(s) 51, 193, 231, 247, 412
CviQI GTAC 2 cut(s) 415, 497
DdeI CTNAG 1 cut(s) 308
DpnI GATC 2 cut(s) 135, 263
DpnII GATC 2 cut(s) 133, 261
Eco47I GGWCC 1 cut(s) 317
EcoRI GAATTC 1 cut(s) 488
EcoRII CCWGG 2 cut(s) 51, 147
FaiI YATR 3 cut(s) 173, 266, 369
FaqI GGGAC 2 cut(s) 23, 475
Fnu4HI GCNGC 2 cut(s) 94, 232
FokI GGATG 2 cut(s) 116, 395
Fsp4HI GCNGC 2 cut(s) 94, 232
FspBI CTAG 2 cut(s) 375, 526
GluI GCNGC 2 cut(s) 94, 232
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 193
HapII CCGG 4 cut(s) 194, 201, 218, 356
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 386, 463
HpaII CCGG 4 cut(s) 194, 201, 218, 356
HphI GGTGA 4 cut(s) 166, 199, 215, 229
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 309
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 173, 250
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 1 cut(s) 234
HpyF3I CTNAG 1 cut(s) 308
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 2 cut(s) 133, 261
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 3 cut(s) 243, 259, 302
MaeI CTAG 2 cut(s) 375, 526
MaeIII GTNAC 3 cut(s) 18, 154, 436
MalI GATC 2 cut(s) 135, 263
MboI GATC 2 cut(s) 133, 261
MflI RGATCY 1 cut(s) 133
MluCI AATT 4 cut(s) 71, 83, 441, 488
MlyI GAGTC 1 cut(s) 457
MnlI CCTC 4 cut(s) 51, 183, 285, 373
MseI TTAA 2 cut(s) 210, 398
MspA1I CMGCKG 2 cut(s) 231, 255
MspI CCGG 4 cut(s) 194, 201, 218, 356
MspR9I CCNGG 2 cut(s) 53, 149
MvaI CCWGG 2 cut(s) 53, 149
MvnI CGCG 1 cut(s) 255
NdeII GATC 2 cut(s) 133, 261
NmuCI GTSAC 2 cut(s) 154, 436
PfeI GAWTC 1 cut(s) 386
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 2 cut(s) 95, 233
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 51, 147
PspGI CCWGG 2 cut(s) 51, 147
PspPI GGNCC 1 cut(s) 317
PsuI RGATCY 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 231
RsaI GTAC 2 cut(s) 416, 498
RsaNI GTAC 2 cut(s) 415, 497
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 2 cut(s) 210, 398
SatI GCNGC 2 cut(s) 94, 232
Sau3AI GATC 2 cut(s) 133, 261
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 457
ScrFI CCNGG 2 cut(s) 53, 149
SetI ASST 6 cut(s) 189, 233, 242, 249, 288, 333
SfaNI GCATC 3 cut(s) 243, 259, 302
Sfr303I CCGCGG 1 cut(s) 256
SgrAI CRCCGGYG 1 cut(s) 200
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 1 cut(s) 317
Sse9I AATT 4 cut(s) 71, 83, 441, 488
SsiI CCGC 6 cut(s) 94, 152, 253, 255, 272, 315
SspMI CTAG 2 cut(s) 375, 526
StyD4I CCNGG 2 cut(s) 51, 147
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 324, 466
TasI AATT 4 cut(s) 71, 83, 441, 488
TauI GCSGC 1 cut(s) 96
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 210, 398
Tru9I TTAA 2 cut(s) 210, 398
TseFI GTSAC 2 cut(s) 154, 436
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 2 cut(s) 154, 436
TspGWI ACGGA 2 cut(s) 95, 312
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 2 cut(s) 71, 488
XspI CTAG 2 cut(s) 375, 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.