Rh1CG394100

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0008412
Physical Location & Seq
Reverse (-)
66153621 .. 66155194
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG394100.1

Sequence Viewer

Length: 459 bp
ATGGCTTCTAACTTCTGCTTCACGACCCTTGCAATCCTCGCTCTTGCTCTTGCTGTTTGCGTGCAAGGCACTCTAGGGGGAGTAACATGTGAGAATCTAGACGAAAGCACTTGTGCGTTCGCAGTGTCATCATCGGCCAAACGCTGTGTGCTTGAGAAGCACGTAAAGAGGAGCGGAGAGGAAGCATACACATGCCGCACATCAGAGATTGAAGCAGATAAACTGAAGGACTGGATCGAGAGCGAGCAGTGCATTAAATCTTGCGGCCTGGACCGCAAGTCTTATGGAATCTCATCCGACTCTCTCCTCGAGTCTCGCTTTGCACAGAAGCTTTGCTCTCCTCAGTGCTACGGCAGCTGCCCCAACATTGTTGACCTTTACTTCAACCTCGCAGCTGGTGAAGGTACCTGTGCAAATACATATCATGCTAACGCAATACCAAATTTGCTCATGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

152

Amino Acids

16.43

Weight (kDa)

5.38

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 28 - 137 2.8e-58 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 404
AccBSI CCGCTC 1 cut(s) 174
AciI CCGC 4 cut(s) 174, 196, 264, 274
AclWI GGATC 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 2 cut(s) 212, 385
AhdI GACNNNNNGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 3 cut(s) 331, 357, 395
AluI AGCT 3 cut(s) 331, 357, 395
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 2 cut(s) 135, 265
ApeKI GCWGC 3 cut(s) 354, 357, 392
ApoI RAATTY 1 cut(s) 442
Asp718I GGTACC 1 cut(s) 404
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 308
AvaII GGWCC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 404
BbvI GCAGC 3 cut(s) 344, 366, 404
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 2 cut(s) 74, 98
BisI GCNGC 5 cut(s) 196, 265, 355, 358, 393
BlsI GCNGC 5 cut(s) 197, 266, 356, 359, 394
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 271
BmeRI GACNNNNNGTC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 406
BmrFI CCNGG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 173
BsaAI YACGTR 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 269
BseGI GGATG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 3 cut(s) 184, 296, 330
BseXI GCAGC 3 cut(s) 344, 366, 404
BshFI GGCC 2 cut(s) 137, 267
BshNI GGYRCC 1 cut(s) 404
BsiHKCI CYCGRG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 318
BsnI GGCC 2 cut(s) 137, 267
BsoBI CYCGRG 1 cut(s) 308
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 4 cut(s) 174, 196, 264, 274
BspANI GGCC 2 cut(s) 137, 267
BspCNI CTCAG 1 cut(s) 355
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 1 cut(s) 406
BspPI GGATC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 236
BssMI GATC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 2 cut(s) 62, 245
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 293
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 6 cut(s) 38, 66, 157, 249, 273, 354
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 2 cut(s) 90, 195
BstSCI CCNGG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 344, 366, 404
BsuRI GGCC 2 cut(s) 137, 267
BtsCI GGATG 1 cut(s) 293
BtsI GCAGTG 2 cut(s) 129, 254
BtsIMutI CAGTG 3 cut(s) 129, 254, 350
Cac8I GCNNGC 2 cut(s) 62, 245
CciI TCATGA 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 405
CviAII CATG 4 cut(s) 87, 192, 425, 451
CviJI RGCY 6 cut(s) 5, 137, 267, 331, 357, 395
CviKI_1 RGCY 6 cut(s) 5, 137, 267, 331, 357, 395
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 1 cut(s) 342
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DriI GACNNNNNGTC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 135
Eam1105I GACNNNNNGTC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 267
FaeI CATG 4 cut(s) 90, 195, 428, 454
FaiI YATR 7 cut(s) 88, 187, 193, 285, 421, 426, 452
FatI CATG 4 cut(s) 86, 191, 424, 450
Fnu4HI GCNGC 5 cut(s) 196, 265, 355, 358, 393
FokI GGATG 1 cut(s) 280
Fsp4HI GCNGC 5 cut(s) 196, 265, 355, 358, 393
FspBI CTAG 2 cut(s) 74, 98
GluI GCNGC 5 cut(s) 196, 265, 355, 358, 393
HaeIII GGCC 2 cut(s) 137, 267
Hin1II CATG 4 cut(s) 90, 195, 428, 454
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 4 cut(s) 94, 288, 299, 311
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 373
Hpy188I TCNGA 2 cut(s) 205, 298
Hpy188III TCNNGA 4 cut(s) 22, 98, 238, 451
Hpy8I GTNNAC 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 220, 395
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 5 cut(s) 32, 64, 252, 323, 413
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 66, 157, 249, 273, 354
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 4 cut(s) 90, 195, 428, 454
KpnI GGTACC 1 cut(s) 408
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 5 cut(s) 217, 254, 281, 381, 421
Lsp1109I GCAGC 3 cut(s) 344, 366, 404
MaeI CTAG 2 cut(s) 74, 98
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 236
MbiI CCGCTC 1 cut(s) 174
MboI GATC 1 cut(s) 234
MluCI AATT 1 cut(s) 442
MlyI GAGTC 2 cut(s) 293, 320
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 6 cut(s) 47, 162, 172, 317, 351, 398
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 190
MspA1I CMGCKG 2 cut(s) 357, 395
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 6 cut(s) 38, 66, 157, 249, 273, 354
NdeII GATC 1 cut(s) 234
NlaIII CATG 4 cut(s) 90, 195, 428, 454
NlaIV GGNNCC 1 cut(s) 406
NspI RCATGY 2 cut(s) 90, 195
PaeR7I CTCGAG 1 cut(s) 308
PagI TCATGA 1 cut(s) 450
PciI ACATGT 1 cut(s) 86
PfeI GAWTC 2 cut(s) 94, 288
PkrI GCNGC 5 cut(s) 197, 266, 356, 359, 394
PleI GAGTC 2 cut(s) 293, 319
PpsI GAGTC 2 cut(s) 293, 319
Ppu21I YACGTR 1 cut(s) 163
PscI ACATGT 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 406
PspPI GGNCC 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 308
PvuII CAGCTG 2 cut(s) 357, 395
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
RseI CAYNNNNRTG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 5 cut(s) 196, 265, 355, 358, 393
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 2 cut(s) 293, 320
ScrFI CCNGG 1 cut(s) 269
SetI ASST 8 cut(s) 165, 333, 359, 378, 390, 397, 406, 410
Sfr274I CTCGAG 1 cut(s) 308
SinI GGWCC 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 190
SmlI CTYRAG 2 cut(s) 152, 308
SmoI CTYRAG 2 cut(s) 152, 308
Sse9I AATT 1 cut(s) 442
SsiI CCGC 4 cut(s) 174, 196, 264, 274
SspMI CTAG 2 cut(s) 74, 98
StyD4I CCNGG 1 cut(s) 267
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 237, 309
TasI AATT 1 cut(s) 442
TauI GCSGC 2 cut(s) 198, 267
TfiI GAWTC 2 cut(s) 94, 288
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 3 cut(s) 129, 254, 350
TseI GCWGC 3 cut(s) 354, 357, 392
TspRI CASTG 3 cut(s) 129, 254, 350
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 442
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 2 cut(s) 90, 195
XhoI CTCGAG 1 cut(s) 308
XspI CTAG 2 cut(s) 74, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.