MD01G1201900.v1.1

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0008412
Physical Location & Seq
Reverse (-)
29791492 .. 29792585
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1201900.v1.1.491

Sequence Viewer

Length: 597 bp
ATGGCTTCTAACTTGTGCTTGAAGACCCTTGCAGTGTTGGCTCTTGCCCTTGCGGTTTGTGTCCAAGCCACTCTAGGGGGAATAACATGTGAGAATCTGGAGCACGATGCATGCGCATTCGCGGTGTCGTCGTCCGGCAAACGCTGTGTGCTTGAGAAGCATGTGAAAAGAAGCGGAGAGGAAGCGTACACGTGCCGAACGTCAGAAATTGAGGCCGATAACTTGAAGGACTGGATCGAGAGCGAGAAGTGCATCAAGTCTTGTGGGCTTGACCGCAAATCCTACGGCATCTCATCAGACTCTCTCCTGGAGTCTCGATTCACACAAAAACTTTGCTCCCCTCAGTGCTACGGCAACTGCCCCAACATTGTTGACCTTTACTTCAATCTTGCGGCTGGTGAAGGTGTATTTTTACCAAAACTTTGTGAAGCACAAGAAGCAAATGCTCGTCGAGAGATGTCGGAGATTCGTAGCTCTGGATATGTTGCGCCGGGACCAATCAACGCGAAATTAACAGCACCAGGGCCAATCAACTCAGTGAAGTTAGCAACCTCTTATACACCAGCGGAGGGTGCCCCAGCCGAGGCTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

199

Amino Acids

21.18

Weight (kDa)

5.52

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 28 - 170 1.5e-75 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 115
AccB1I GGYRCC 1 cut(s) 572
AccII CGCG 2 cut(s) 122, 506
AciI CCGC 6 cut(s) 53, 122, 174, 274, 392, 566
AclWI GGATC 1 cut(s) 242
AcvI CACGTG 1 cut(s) 192
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 75, 569, 583
AflIII ACRYGT 2 cut(s) 86, 189
AgsI TTSAA 3 cut(s) 22, 226, 385
AjnI CCWGG 2 cut(s) 306, 520
AluBI AGCT 1 cut(s) 474
AluI AGCT 1 cut(s) 474
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 1 cut(s) 242
AoxI GGCC 2 cut(s) 213, 524
AspLEI GCGC 2 cut(s) 116, 490
AspS9I GGNCC 2 cut(s) 494, 524
AsuC2I CCSGG 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 494
BaeGI GKGCMC 1 cut(s) 577
BanI GGYRCC 1 cut(s) 572
BbrPI CACGTG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 105
BceAI ACGGC 2 cut(s) 301, 367
BciT130I CCWGG 2 cut(s) 308, 522
BcnI CCSGG 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 3 cut(s) 308, 492, 522
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 2 cut(s) 494, 524
BmiI GGNNCC 3 cut(s) 495, 574, 588
BmrFI CCNGG 3 cut(s) 308, 492, 522
BmsI GCATC 3 cut(s) 97, 261, 297
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 2 cut(s) 119, 329
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 492
BsaAI YACGTR 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 521, 582
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 569, 583
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 2 cut(s) 308, 522
BseDI CCNNGG 2 cut(s) 521, 582
BseLI CCNNNNNNNGG 3 cut(s) 75, 569, 583
BseMII CTCAG 2 cut(s) 356, 549
BseNI ACTGG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 577
BseYI CCCAGC 1 cut(s) 577
Bsh1236I CGCG 2 cut(s) 122, 506
BshFI GGCC 2 cut(s) 215, 526
BshNI GGYRCC 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 135, 491
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 3 cut(s) 75, 569, 583
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 2 cut(s) 215, 526
Bsp1286I GDGCHC 2 cut(s) 105, 577
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 6 cut(s) 53, 122, 174, 274, 392, 566
BspANI GGCC 2 cut(s) 215, 526
BspCNI CTCAG 2 cut(s) 355, 548
BspFNI CGCG 2 cut(s) 122, 506
BspLI GGNNCC 3 cut(s) 495, 574, 588
BspPI GGATC 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 572
BsrI ACTGG 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 521, 582
BssMI GATC 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 308, 522
BstBAI YACGTR 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 342, 535
BstFNI CGCG 2 cut(s) 122, 506
BstHHI GCGC 2 cut(s) 116, 490
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 5 cut(s) 38, 157, 249, 437, 572
BstNI CCWGG 2 cut(s) 308, 522
BstNSI RCATGY 3 cut(s) 90, 114, 164
BstSCI CCNGG 3 cut(s) 306, 490, 520
BstSLI GKGCMC 1 cut(s) 577
BstUI CGCG 2 cut(s) 122, 506
BstV2I GAAGAC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 215, 526
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 3 cut(s) 39, 350, 543
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 2 cut(s) 116, 490
Cfr13I GGNCC 2 cut(s) 494, 524
Csp6I GTAC 1 cut(s) 187
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 3 cut(s) 87, 111, 161
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 342, 535
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 494
Eco72I CACGTG 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 306, 520
EcoT22I ATGCAT 1 cut(s) 112
FaeI CATG 3 cut(s) 90, 114, 164
FaiI YATR 5 cut(s) 88, 112, 162, 483, 558
FaqI GGGAC 1 cut(s) 507
FatI CATG 3 cut(s) 86, 110, 160
Fnu4HI GCNGC 1 cut(s) 393
Fsp4HI GCNGC 1 cut(s) 393
FspAI RTGCGCAY 1 cut(s) 115
FspBI CTAG 1 cut(s) 74
FspI TGCGCA 1 cut(s) 115
GlaI GCGC 2 cut(s) 115, 489
GluI GCNGC 1 cut(s) 393
GsaI CCCAGC 1 cut(s) 581
GsuI CTGGAG 2 cut(s) 119, 329
HaeIII GGCC 2 cut(s) 215, 526
HapII CCGG 2 cut(s) 135, 491
HhaI GCGC 2 cut(s) 116, 490
Hin1II CATG 3 cut(s) 90, 114, 164
Hin6I GCGC 2 cut(s) 114, 488
HinP1I GCGC 2 cut(s) 114, 488
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 5 cut(s) 94, 299, 311, 318, 466
HpaII CCGG 2 cut(s) 135, 491
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 2 cut(s) 189, 373
Hpy188I TCNGA 3 cut(s) 205, 298, 463
Hpy188III TCNNGA 5 cut(s) 98, 238, 315, 452, 477
Hpy8I GTNNAC 2 cut(s) 189, 373
Hpy99I CGWCG 2 cut(s) 133, 453
HpyAV CCTTC 2 cut(s) 220, 395
HpyCH4IV ACGT 2 cut(s) 191, 200
HpyCH4V TGCA 3 cut(s) 32, 110, 252
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 157, 249, 437, 572
HpyF3I CTNAG 2 cut(s) 342, 535
HpySE526I ACGT 2 cut(s) 191, 200
Hsp92II CATG 3 cut(s) 90, 114, 164
HspAI GCGC 2 cut(s) 114, 488
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 3 cut(s) 100, 341, 592
LweI GCATC 3 cut(s) 97, 261, 297
MaeI CTAG 1 cut(s) 74
MaeII ACGT 2 cut(s) 191, 200
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 2 cut(s) 105, 577
MluCI AATT 2 cut(s) 207, 509
MlyI GAGTC 2 cut(s) 293, 320
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 6 cut(s) 172, 205, 351, 562, 562, 577
Mph1103I ATGCAT 1 cut(s) 112
MseI TTAA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 2 cut(s) 135, 491
MspR9I CCNGG 3 cut(s) 308, 492, 522
Mva1269I GAATGC 1 cut(s) 116
MvaI CCWGG 2 cut(s) 308, 522
MvnI CGCG 2 cut(s) 122, 506
MwoI GCNNNNNNNGC 5 cut(s) 38, 157, 249, 437, 572
NciI CCSGG 1 cut(s) 492
NdeII GATC 1 cut(s) 234
NlaIII CATG 3 cut(s) 90, 114, 164
NlaIV GGNNCC 3 cut(s) 495, 574, 588
NsbI TGCGCA 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 3 cut(s) 90, 114, 164
PaeI GCATGC 1 cut(s) 114
PciI ACATGT 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 1 cut(s) 116
PfeI GAWTC 3 cut(s) 94, 318, 466
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 2 cut(s) 293, 319
PmaCI CACGTG 1 cut(s) 192
PmlI CACGTG 1 cut(s) 192
PpsI GAGTC 2 cut(s) 293, 319
Ppu21I YACGTR 1 cut(s) 192
PscI ACATGT 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 306, 520
PspCI CACGTG 1 cut(s) 192
PspFI CCCAGC 1 cut(s) 577
PspGI CCWGG 2 cut(s) 306, 520
PspN4I GGNNCC 3 cut(s) 495, 574, 588
PspPI GGNCC 2 cut(s) 494, 524
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 2 cut(s) 494, 524
SchI GAGTC 2 cut(s) 293, 320
ScrFI CCNGG 3 cut(s) 308, 492, 522
SduI GDGCHC 2 cut(s) 105, 577
SetI ASST 6 cut(s) 194, 203, 378, 406, 476, 554
SfaNI GCATC 3 cut(s) 97, 261, 297
SinI GGWCC 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SphI GCATGC 1 cut(s) 114
Sse9I AATT 2 cut(s) 207, 509
SsiI CCGC 6 cut(s) 53, 122, 174, 274, 392, 566
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 3 cut(s) 306, 490, 520
TaiI ACGT 2 cut(s) 194, 203
TaqI TCGA 3 cut(s) 237, 316, 451
TasI AATT 2 cut(s) 207, 509
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 3 cut(s) 94, 318, 466
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 3 cut(s) 39, 350, 543
TspRI CASTG 3 cut(s) 39, 350, 543
VpaK11BI GGWCC 1 cut(s) 494
XceI RCATGY 3 cut(s) 90, 114, 164
XspI CTAG 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.