AT5G52390

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008412
Physical Location & Seq
Reverse (-)
21263897 .. 21265460
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52390.1

Sequence Viewer

Length: 588 bp
ATGGCTTTGAAGACAGTTTTCGTAGCTTTTATGATTCTCCTTGCCATCTATTCGCAAACGACGTTTGGGGACGATGTGAAGTGCGAGAATCTGGATGAAAACACGTGTGCCTTCGCGGTCTCGTCCACTGGAAAACGTTGCGTTTTGGAGAAGAGCATGAAGAGGAGCGGGATCGAGGTGTACACATGTCGATCATCGGAGATAGAAGCTAACAAGGTCACAAACATTATTGAATCGGACGAGTGCATTAAAGCGTGTGGTCTAGACCGGAAAGCTTTAGGTATATCTTCGGACGCATTGTTGGAATCTCAGTTCACACATAAACTCTGCTCGGTTAAATGCTTAAACCAATGTCCTAACGTAGTCGATCTCTACTTCAACCTTGCTGCTGGTGAAGGAGTGTATTTACCAAAGCTATGTGAATCACAAGAAGGGAAGTCAAGAAGAGCAATGTCGGAAATTAGGAGCTCGGGAATTGCAATGGACACTCTTGCACCGGTTGGACCAGTCATGTTGGGCGAGATAGCACCTGAGCCGGCTACTTCAATGGACAACATGCCTTACGTGCCGGCACCTTCACCGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

195

Amino Acids

21.16

Weight (kDa)

5.02

Isoelectric Point (pI)

65.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 26 - 168 2.1e-71 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 571
AccBSI CCGCTC 1 cut(s) 168
AccII CGCG 1 cut(s) 116
AciI CCGC 2 cut(s) 116, 168
AclI AACGTT 1 cut(s) 136
AclWI GGATC 1 cut(s) 179
AcvI CACGTG 1 cut(s) 105
AfaI GTAC 1 cut(s) 182
AflIII ACRYGT 3 cut(s) 102, 104, 185
AgeI ACCGGT 1 cut(s) 496
AgsI TTSAA 4 cut(s) 10, 233, 379, 546
AloI GAACNNNNNNTCC 2 cut(s) 296, 328
AluBI AGCT 5 cut(s) 26, 209, 275, 415, 468
AluI AGCT 5 cut(s) 26, 209, 275, 415, 468
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 469
ApeKI GCWGC 1 cut(s) 386
AsiGI ACCGGT 1 cut(s) 496
AspS9I GGNCC 1 cut(s) 503
AsuHPI GGTGA 2 cut(s) 404, 570
AvaI CYCGRG 1 cut(s) 469
AvaII GGWCC 1 cut(s) 503
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 470
BbrPI CACGTG 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 373
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 263
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme18I GGWCC 1 cut(s) 503
BmeT110I CYCGRG 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 531
BsaAI YACGTR 2 cut(s) 105, 565
BsaI GGTCTC 1 cut(s) 124
BsaWI WCCGGW 2 cut(s) 267, 496
Bse118I RCCGGY 3 cut(s) 496, 535, 568
Bse1I ACTGG 2 cut(s) 133, 506
Bse3DI GCAATG 2 cut(s) 456, 486
BseGI GGATG 1 cut(s) 100
BseMI GCAATG 2 cut(s) 456, 486
BseMII CTCAG 2 cut(s) 323, 522
BseNI ACTGG 2 cut(s) 133, 506
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 571
BshTI ACCGGT 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 470
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 4 cut(s) 268, 497, 536, 569
BslFI GGGAC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 470
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 3 cut(s) 171, 191, 367
BspACI CCGC 2 cut(s) 116, 168
BspCNI CTCAG 2 cut(s) 322, 523
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 573
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 2 cut(s) 146, 439
BspT107I GGYRCC 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 124
BsrBI CCGCTC 1 cut(s) 168
BsrDI GCAATG 2 cut(s) 456, 486
BsrFI RCCGGY 3 cut(s) 496, 535, 568
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 2 cut(s) 133, 506
BssAI RCCGGY 3 cut(s) 496, 535, 568
BssMI GATC 3 cut(s) 171, 191, 367
Bst4CI ACNGT 2 cut(s) 16, 582
Bst6I CTCTTC 3 cut(s) 146, 155, 439
BstAUI TGTACA 1 cut(s) 180
BstBAI YACGTR 2 cut(s) 105, 565
BstC8I GCNNGC 2 cut(s) 537, 570
BstDEI CTNAG 2 cut(s) 309, 531
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 3 cut(s) 174, 194, 370
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 3 cut(s) 171, 191, 367
BstMWI GCNNNNNNNGC 1 cut(s) 565
BstNSI RCATGY 2 cut(s) 189, 559
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 17
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 537, 570
Cfr10I RCCGGY 3 cut(s) 496, 535, 568
Cfr13I GGNCC 1 cut(s) 503
CseI GACGC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 181
CspAI ACCGGT 1 cut(s) 496
CviAII CATG 4 cut(s) 157, 186, 511, 556
CviJI RGCY 8 cut(s) 5, 26, 209, 275, 415, 468, 535, 539
CviKI_1 RGCY 8 cut(s) 5, 26, 209, 275, 415, 468, 535, 539
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 309, 531
DpnI GATC 3 cut(s) 173, 193, 369
DpnII GATC 3 cut(s) 171, 191, 367
Eam1104I CTCTTC 3 cut(s) 146, 155, 439
EarI CTCTTC 3 cut(s) 146, 155, 439
Ecl136II GAGCTC 1 cut(s) 468
Eco24I GRGCYC 1 cut(s) 470
Eco31I GGTCTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 503
Eco53kI GAGCTC 1 cut(s) 468
Eco72I CACGTG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 469
EcoICRI GAGCTC 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 470
FaeI CATG 4 cut(s) 160, 189, 514, 559
FaiI YATR 8 cut(s) 32, 158, 187, 284, 321, 418, 512, 557
FaqI GGGAC 1 cut(s) 83
FatI CATG 4 cut(s) 156, 185, 510, 555
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 263
GluI GCNGC 1 cut(s) 387
HapII CCGG 4 cut(s) 268, 497, 536, 569
HgaI GACGC 1 cut(s) 302
Hin1II CATG 4 cut(s) 160, 189, 514, 559
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 5 cut(s) 34, 88, 233, 305, 422
HpaII CCGG 4 cut(s) 268, 497, 536, 569
HphI GGTGA 2 cut(s) 404, 570
Hpy166II GTNNAC 4 cut(s) 126, 181, 183, 315
Hpy188I TCNGA 4 cut(s) 199, 238, 292, 457
Hpy188III TCNNGA 4 cut(s) 92, 263, 441, 471
Hpy8I GTNNAC 4 cut(s) 126, 181, 183, 315
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 4 cut(s) 121, 389, 425, 585
HpyCH4III ACNGT 2 cut(s) 16, 582
HpyCH4IV ACGT 5 cut(s) 62, 104, 136, 360, 564
HpyCH4V TGCA 3 cut(s) 246, 479, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 565
HpyF3I CTNAG 2 cut(s) 309, 531
HpySE526I ACGT 5 cut(s) 62, 104, 136, 360, 564
Hsp92II CATG 4 cut(s) 160, 189, 514, 559
KroI GCCGGC 2 cut(s) 535, 568
KroNI GCCGGC 2 cut(s) 537, 570
Kzo9I GATC 3 cut(s) 171, 191, 367
LguI GCTCTTC 2 cut(s) 146, 439
LmnI GCTCC 2 cut(s) 165, 465
LpnPI CCDG 9 cut(s) 77, 114, 281, 375, 510, 519, 543, 549, 582
Lsp1109I GCAGC 1 cut(s) 373
MaeI CTAG 1 cut(s) 263
MaeII ACGT 5 cut(s) 62, 104, 136, 360, 564
MaeIII GTNAC 1 cut(s) 217
MalI GATC 3 cut(s) 173, 193, 369
MbiI CCGCTC 1 cut(s) 168
MboI GATC 3 cut(s) 171, 191, 367
MboII GAAGA 5 cut(s) 22, 163, 172, 279, 456
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 2 cut(s) 459, 474
MmeI TCCRAC 3 cut(s) 282, 435, 481
MnlI CCTC 2 cut(s) 156, 169
MroNI GCCGGC 2 cut(s) 535, 568
MseI TTAA 4 cut(s) 249, 336, 344, 586
MspI CCGG 4 cut(s) 268, 497, 536, 569
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 565
NaeI GCCGGC 2 cut(s) 537, 570
NdeII GATC 3 cut(s) 171, 191, 367
NgoMIV GCCGGC 2 cut(s) 535, 568
NlaIII CATG 4 cut(s) 160, 189, 514, 559
NlaIV GGNNCC 1 cut(s) 573
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 2 cut(s) 189, 559
PciI ACATGT 1 cut(s) 185
PciSI GCTCTTC 2 cut(s) 146, 439
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PdiI GCCGGC 2 cut(s) 537, 570
PfeI GAWTC 5 cut(s) 34, 88, 233, 305, 422
PinAI ACCGGT 1 cut(s) 496
PkrI GCNGC 1 cut(s) 388
PmaCI CACGTG 1 cut(s) 105
PmlI CACGTG 1 cut(s) 105
Ppu21I YACGTR 2 cut(s) 105, 565
PscI ACATGT 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 136
PspCI CACGTG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 573
PspPI GGNCC 1 cut(s) 503
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SacI GAGCTC 1 cut(s) 470
SapI GCTCTTC 2 cut(s) 146, 439
SaqAI TTAA 4 cut(s) 249, 336, 344, 586
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 3 cut(s) 171, 191, 367
Sau96I GGNCC 1 cut(s) 503
SduI GDGCHC 1 cut(s) 470
SinI GGWCC 1 cut(s) 503
Sse9I AATT 2 cut(s) 459, 474
SsiI CCGC 2 cut(s) 116, 168
SspMI CTAG 1 cut(s) 263
SstI GAGCTC 1 cut(s) 470
TaaI ACNGT 2 cut(s) 16, 582
TaiI ACGT 5 cut(s) 65, 107, 139, 363, 567
TaqI TCGA 3 cut(s) 174, 190, 366
TasI AATT 2 cut(s) 459, 474
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 5 cut(s) 34, 88, 233, 305, 422
Tru1I TTAA 4 cut(s) 249, 336, 344, 586
Tru9I TTAA 4 cut(s) 249, 336, 344, 586
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 111, 173
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 503
XbaI TCTAGA 1 cut(s) 262
XceI RCATGY 2 cut(s) 189, 559
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.