Rh4BG103200

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008412
Physical Location & Seq
Reverse (-)
17767667 .. 17768793
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG103200.1

Sequence Viewer

Length: 543 bp
ATGGCTTCAAATGTATGCTTCAAAACCCTTGCAGTCCTCGCTCTTTTTCTTGCCGTTTGCGTGCAAGGCACTCGAGGAGGAGTAACATGTGAAAATCTGGACCAAGAGAAATGCGCATTTGCGGTTTCATCATCAGGCAACCGATGTGTTCTTGAGAAGCATGTGAGGAGGAGCGGACAAGAAGCATACACATGCCGCACATCAGAAATTGAAGCAAACGATAAGTTGAAAGATTGGACTGAGAGCGAGCTGTGCATCAACTCTTGTGGCCTTGACCGCAAATCTTACGGAATCTCATCGGATTCTCTCCTAGAGTTTGGCTTCACACAAAAGCTTTGCTCTCCTCAGTGCTACGACAGTTGCCCCAACGTCGTTGACCTTTACTTCAATCTCGCAGCTGGTGAAGGTGTGTTTCTACCAAAGTTATGTAAAGCGCAAGGACCCAATGCTCATAGAGAAATGTCTGAGATCCGTAGCTCTGGTTATGTTGCACCTGGACCAGTAAACCCAGCCAAGTTGGTAGCCGAAGGACCAGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

180

Amino Acids

19.44

Weight (kDa)

5.74

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 28 - 172 7e-71 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 174
AciI CCGC 4 cut(s) 122, 174, 196, 277
AclWI GGATC 1 cut(s) 463
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 5 cut(s) 9, 22, 212, 229, 388
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 4 cut(s) 250, 334, 398, 477
AluI AGCT 4 cut(s) 250, 334, 398, 477
AlwI GGATC 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 395
AspLEI GCGC 2 cut(s) 116, 436
AspS9I GGNCC 4 cut(s) 100, 440, 497, 530
AsuHPI GGTGA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 4 cut(s) 100, 440, 497, 530
BbvI GCAGC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 1 cut(s) 495
BfaI CTAG 1 cut(s) 311
BisI GCNGC 2 cut(s) 196, 396
BlsI GCNGC 2 cut(s) 197, 397
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 4 cut(s) 100, 440, 497, 530
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 4 cut(s) 100, 440, 497, 530
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 500, 533
BseBI CCWGG 1 cut(s) 495
BseMII CTCAG 3 cut(s) 231, 359, 456
BseNI ACTGG 2 cut(s) 500, 533
BseRI GAGGAG 5 cut(s) 90, 93, 181, 184, 333
BseXI GCAGC 1 cut(s) 407
BseYI CCCAGC 1 cut(s) 508
BshFI GGCC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 72
BsnI GGCC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 72
Bsp143I GATC 1 cut(s) 468
BspACI CCGC 4 cut(s) 122, 174, 196, 277
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 3 cut(s) 232, 358, 457
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 174
BsrI ACTGG 2 cut(s) 500, 533
BssMI GATC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 62, 248
BstDEI CTNAG 3 cut(s) 240, 345, 465
BstHHI GCGC 2 cut(s) 116, 436
BstKTI GATC 1 cut(s) 471
BstMBI GATC 1 cut(s) 468
BstMWI GCNNNNNNNGC 4 cut(s) 38, 66, 252, 276
BstNI CCWGG 1 cut(s) 495
BstNSI RCATGY 3 cut(s) 90, 164, 195
BstSCI CCNGG 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BsuRI GGCC 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 62, 248
CfoI GCGC 2 cut(s) 116, 436
Cfr13I GGNCC 4 cut(s) 100, 440, 497, 530
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 3 cut(s) 87, 161, 192
CviJI RGCY 9 cut(s) 5, 250, 270, 321, 334, 398, 477, 512, 524
CviKI_1 RGCY 9 cut(s) 5, 250, 270, 321, 334, 398, 477, 512, 524
DdeI CTNAG 3 cut(s) 240, 345, 465
DpnI GATC 1 cut(s) 470
DpnII GATC 1 cut(s) 468
Eco47I GGWCC 4 cut(s) 100, 440, 497, 530
Eco88I CYCGRG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 493
FaeI CATG 3 cut(s) 90, 164, 195
FaiI YATR 8 cut(s) 16, 88, 162, 187, 193, 427, 453, 486
FatI CATG 3 cut(s) 86, 160, 191
Fnu4HI GCNGC 2 cut(s) 196, 396
Fsp4HI GCNGC 2 cut(s) 196, 396
FspAI RTGCGCAY 1 cut(s) 115
FspBI CTAG 1 cut(s) 311
FspI TGCGCA 1 cut(s) 115
GlaI GCGC 2 cut(s) 115, 435
GluI GCNGC 2 cut(s) 196, 396
GsaI CCCAGC 1 cut(s) 512
HaeIII GGCC 1 cut(s) 270
HhaI GCGC 2 cut(s) 116, 436
Hin1II CATG 3 cut(s) 90, 164, 195
Hin6I GCGC 2 cut(s) 114, 434
HinP1I GCGC 2 cut(s) 114, 434
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 2 cut(s) 291, 302
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 3 cut(s) 376, 505, 538
Hpy188I TCNGA 3 cut(s) 205, 301, 466
Hpy188III TCNNGA 2 cut(s) 98, 152
Hpy8I GTNNAC 3 cut(s) 376, 505, 538
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 2 cut(s) 398, 521
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 4 cut(s) 32, 64, 255, 491
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 66, 252, 276
HpyF3I CTNAG 3 cut(s) 240, 345, 465
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 3 cut(s) 90, 164, 195
HspAI GCGC 2 cut(s) 114, 434
Kzo9I GATC 1 cut(s) 468
LmnI GCTCC 1 cut(s) 171
LpnPI CCDG 8 cut(s) 83, 120, 384, 465, 480, 507, 513, 522
Lsp1109I GCAGC 1 cut(s) 407
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 82
MalI GATC 1 cut(s) 470
MbiI CCGCTC 1 cut(s) 174
MboI GATC 1 cut(s) 468
MflI RGATCY 1 cut(s) 468
MluCI AATT 1 cut(s) 207
MnlI CCTC 6 cut(s) 47, 68, 71, 159, 162, 354
MslI CAYNNNNRTG 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 4 cut(s) 38, 66, 252, 276
NdeII GATC 1 cut(s) 468
NlaIII CATG 3 cut(s) 90, 164, 195
NlaIV GGNNCC 1 cut(s) 442
NsbI TGCGCA 1 cut(s) 115
NspI RCATGY 3 cut(s) 90, 164, 195
PaeR7I CTCGAG 1 cut(s) 72
PciI ACATGT 1 cut(s) 86
PfeI GAWTC 2 cut(s) 291, 302
PkrI GCNGC 2 cut(s) 197, 397
PpuMI RGGWCCY 1 cut(s) 440
PscI ACATGT 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 508
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 4 cut(s) 100, 440, 497, 530
PspPPI RGGWCCY 1 cut(s) 440
PspXI VCTCGAGB 1 cut(s) 72
PsuI RGATCY 1 cut(s) 468
PvuII CAGCTG 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 190
SatI GCNGC 2 cut(s) 196, 396
Sau3AI GATC 1 cut(s) 468
Sau96I GGNCC 4 cut(s) 100, 440, 497, 530
ScrFI CCNGG 1 cut(s) 495
SetI ASST 8 cut(s) 252, 336, 372, 381, 400, 409, 479, 496
SfaNI GCATC 1 cut(s) 264
Sfr274I CTCGAG 1 cut(s) 72
SinI GGWCC 4 cut(s) 100, 440, 497, 530
SlaI CTCGAG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 190
SmlI CTYRAG 2 cut(s) 72, 152
SmoI CTYRAG 2 cut(s) 72, 152
Sse9I AATT 1 cut(s) 207
SsiI CCGC 4 cut(s) 122, 174, 196, 277
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 73
TasI AATT 1 cut(s) 207
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 2 cut(s) 291, 302
TscAI CASTG 1 cut(s) 353
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 2 cut(s) 303, 461
TspRI CASTG 1 cut(s) 353
VpaK11BI GGWCC 4 cut(s) 100, 440, 497, 530
XceI RCATGY 3 cut(s) 90, 164, 195
XhoI CTCGAG 1 cut(s) 72
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.