MD07G1270900.v1.1

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0008412
Physical Location & Seq
Reverse (-)
33782669 .. 33783966
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1270900.v1.1.491

Sequence Viewer

Length: 597 bp
ATGGCTTCTACCATGTGCTTGAAGAACATCGCAGTGTTGGCTCTTTCCCTTGCCGTTTGTGTCCAAGCCACTCTAGGAGGAATAACATGTGAGAATCTAGACCACGATGCATGCGCATTCGCGGTGTCATCGTCCGGCAAACGCTGTGTGCTTGAGAAGCACGTGAGAAGAAGCGGGGAGGAAGCGTACACGTGCCGAACATCAGAAATTGAGGCCGATAAGTTAAAGGACTGGATCGAGAGCGAGACGTGCATCAAGTCTTGTGGGCTTGATCGCAAATCCTACGGCATCTCATCAGACTCTCTCCTGGAGTCTAGCTTCACACAAAAACTTTGCTCCCCTCAGTGCTACGGCAGCTGCCCCAACATTGTTGACCTTTACTTCAATCTTGCTGCTGGTGAAGGTGTATTTCTACCAACACTATGTGCAGCACAAGGAGCAAATGCTCGTCGAGAGATGTCGGAGATTCGTAGCTCTGGATACGTCGCACCGGGACCAATCAACGCGAAATTGACAGCACCAGGACCAATCAACTCAGTGAACTTGGCAACTGATTATCCACCAGTGGAGGTTGCCCCAGCACAGGCTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

199

Amino Acids

21.02

Weight (kDa)

5.24

Isoelectric Point (pI)

57.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 28 - 169 2.1e-74 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 115
AccII CGCG 2 cut(s) 122, 506
AciI CCGC 2 cut(s) 122, 174
AclWI GGATC 1 cut(s) 242
AcvI CACGTG 2 cut(s) 163, 192
AdeI CACNNNGTG 1 cut(s) 425
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 583
AflIII ACRYGT 2 cut(s) 86, 189
AgsI TTSAA 2 cut(s) 22, 385
AjiI CACGTC 1 cut(s) 249
AjnI CCWGG 2 cut(s) 306, 520
AluBI AGCT 3 cut(s) 318, 357, 474
AluI AGCT 3 cut(s) 318, 357, 474
Alw26I GTCTC 1 cut(s) 239
AlwI GGATC 1 cut(s) 242
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 4 cut(s) 354, 357, 392, 428
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 494, 524
AsuC2I CCSGG 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 2 cut(s) 494, 524
BbrPI CACGTG 2 cut(s) 163, 192
BbvI GCAGC 4 cut(s) 344, 366, 379, 440
BceAI ACGGC 3 cut(s) 38, 301, 367
BciT130I CCWGG 2 cut(s) 308, 522
BciVI GTATCC 1 cut(s) 473
BcnI CCSGG 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 3 cut(s) 74, 98, 315
BfuI GTATCC 1 cut(s) 473
BisI GCNGC 4 cut(s) 355, 358, 393, 429
BlsI GCNGC 4 cut(s) 356, 359, 394, 430
Bme1390I CCNGG 3 cut(s) 308, 492, 522
Bme18I GGWCC 2 cut(s) 494, 524
BmgBI CACGTC 1 cut(s) 249
BmgT120I GGNCC 2 cut(s) 494, 524
BmiI GGNNCC 2 cut(s) 495, 588
BmrFI CCNGG 3 cut(s) 308, 492, 522
BmsI GCATC 3 cut(s) 97, 261, 297
BpmI CTGGAG 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 492
BsaAI YACGTR 2 cut(s) 163, 192
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse1I ACTGG 2 cut(s) 236, 563
BseBI CCWGG 2 cut(s) 308, 522
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 2 cut(s) 356, 549
BseNI ACTGG 2 cut(s) 236, 563
BseXI GCAGC 4 cut(s) 344, 366, 379, 440
BseYI CCCAGC 1 cut(s) 577
BsgI GTGCAG 1 cut(s) 447
Bsh1236I CGCG 2 cut(s) 122, 506
BshFI GGCC 1 cut(s) 215
BsiSI CCGG 2 cut(s) 135, 491
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 1 cut(s) 239
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 1 cut(s) 215
Bsp143I GATC 2 cut(s) 234, 271
BspACI CCGC 2 cut(s) 122, 174
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 355, 548
BspFNI CGCG 2 cut(s) 122, 506
BspLI GGNNCC 2 cut(s) 495, 588
BspPI GGATC 1 cut(s) 242
BsrI ACTGG 2 cut(s) 236, 563
BssMI GATC 2 cut(s) 234, 271
Bst2UI CCWGG 2 cut(s) 308, 522
BstBAI YACGTR 2 cut(s) 163, 192
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 342, 535
BstFNI CGCG 2 cut(s) 122, 506
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 237, 274
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 2 cut(s) 234, 271
BstMWI GCNNNNNNNGC 5 cut(s) 38, 157, 249, 354, 437
BstNI CCWGG 2 cut(s) 308, 522
BstNSI RCATGY 2 cut(s) 90, 114
BstSCI CCNGG 3 cut(s) 306, 490, 520
BstUI CGCG 2 cut(s) 122, 506
BstV1I GCAGC 4 cut(s) 344, 366, 379, 440
BsuI GTATCC 1 cut(s) 473
BsuRI GGCC 1 cut(s) 215
BtgZI GCGATG 1 cut(s) 13
BtrI CACGTC 1 cut(s) 249
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 4 cut(s) 39, 350, 543, 570
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 494, 524
Csp6I GTAC 1 cut(s) 187
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 3 cut(s) 13, 87, 111
CviJI RGCY 9 cut(s) 5, 41, 68, 215, 268, 318, 357, 474, 587
CviKI_1 RGCY 9 cut(s) 5, 41, 68, 215, 268, 318, 357, 474, 587
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 2 cut(s) 342, 535
DpnI GATC 2 cut(s) 236, 273
DpnII GATC 2 cut(s) 234, 271
DraIII CACNNNGTG 1 cut(s) 425
Eco47I GGWCC 2 cut(s) 494, 524
Eco72I CACGTG 2 cut(s) 163, 192
EcoRII CCWGG 2 cut(s) 306, 520
EcoT22I ATGCAT 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 3 cut(s) 16, 90, 114
FaiI YATR 4 cut(s) 14, 88, 112, 424
FaqI GGGAC 1 cut(s) 507
FatI CATG 3 cut(s) 12, 86, 110
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 4 cut(s) 355, 358, 393, 429
Fsp4HI GCNGC 4 cut(s) 355, 358, 393, 429
FspAI RTGCGCAY 1 cut(s) 115
FspBI CTAG 3 cut(s) 74, 98, 315
FspI TGCGCA 1 cut(s) 115
GlaI GCGC 1 cut(s) 115
GluI GCNGC 4 cut(s) 355, 358, 393, 429
GsaI CCCAGC 1 cut(s) 581
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 1 cut(s) 215
HapII CCGG 2 cut(s) 135, 491
HhaI GCGC 1 cut(s) 116
Hin1II CATG 3 cut(s) 16, 90, 114
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 4 cut(s) 94, 299, 311, 466
HpaII CCGG 2 cut(s) 135, 491
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 3 cut(s) 189, 373, 541
Hpy188I TCNGA 3 cut(s) 205, 298, 463
Hpy188III TCNNGA 4 cut(s) 98, 238, 452, 477
Hpy8I GTNNAC 3 cut(s) 189, 373, 541
Hpy99I CGWCG 2 cut(s) 453, 488
HpyAV CCTTC 1 cut(s) 395
HpyCH4IV ACGT 4 cut(s) 162, 191, 248, 483
HpyCH4V TGCA 3 cut(s) 110, 252, 428
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 157, 249, 354, 437
HpyF3I CTNAG 2 cut(s) 342, 535
HpySE526I ACGT 4 cut(s) 162, 191, 248, 483
Hsp92II CATG 3 cut(s) 16, 90, 114
HspAI GCGC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 234, 271
LmnI GCTCC 3 cut(s) 341, 437, 592
Lsp1109I GCAGC 4 cut(s) 344, 366, 379, 440
LweI GCATC 3 cut(s) 97, 261, 297
MaeI CTAG 3 cut(s) 74, 98, 315
MaeII ACGT 4 cut(s) 162, 191, 248, 483
MalI GATC 2 cut(s) 236, 273
MboI GATC 2 cut(s) 234, 271
MboII GAAGA 2 cut(s) 34, 180
MluCI AATT 2 cut(s) 207, 509
MlyI GAGTC 2 cut(s) 293, 320
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 5 cut(s) 71, 172, 205, 351, 562
Mph1103I ATGCAT 1 cut(s) 112
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 357
MspI CCGG 2 cut(s) 135, 491
MspR9I CCNGG 3 cut(s) 308, 492, 522
Mva1269I GAATGC 1 cut(s) 116
MvaI CCWGG 2 cut(s) 308, 522
MvnI CGCG 2 cut(s) 122, 506
MwoI GCNNNNNNNGC 5 cut(s) 38, 157, 249, 354, 437
NciI CCSGG 1 cut(s) 492
NdeII GATC 2 cut(s) 234, 271
NlaIII CATG 3 cut(s) 16, 90, 114
NlaIV GGNNCC 2 cut(s) 495, 588
NsbI TGCGCA 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 112
NspI RCATGY 2 cut(s) 90, 114
PaeI GCATGC 1 cut(s) 114
PciI ACATGT 1 cut(s) 86
PctI GAATGC 1 cut(s) 116
PfeI GAWTC 2 cut(s) 94, 466
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 4 cut(s) 356, 359, 394, 430
PleI GAGTC 2 cut(s) 293, 319
PmaCI CACGTG 2 cut(s) 163, 192
PmlI CACGTG 2 cut(s) 163, 192
PpsI GAGTC 2 cut(s) 293, 319
Ppu21I YACGTR 2 cut(s) 163, 192
PscI ACATGT 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 306, 520
PspCI CACGTG 2 cut(s) 163, 192
PspFI CCCAGC 1 cut(s) 577
PspGI CCWGG 2 cut(s) 306, 520
PspN4I GGNNCC 2 cut(s) 495, 588
PspPI GGNCC 2 cut(s) 494, 524
PvuII CAGCTG 1 cut(s) 357
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 4 cut(s) 355, 358, 393, 429
Sau3AI GATC 2 cut(s) 234, 271
Sau96I GGNCC 2 cut(s) 494, 524
SchI GAGTC 2 cut(s) 293, 320
ScrFI CCNGG 3 cut(s) 308, 492, 522
SfaNI GCATC 3 cut(s) 97, 261, 297
SinI GGWCC 2 cut(s) 494, 524
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SphI GCATGC 1 cut(s) 114
Sse9I AATT 2 cut(s) 207, 509
SsiI CCGC 2 cut(s) 122, 174
SspMI CTAG 3 cut(s) 74, 98, 315
StyD4I CCNGG 3 cut(s) 306, 490, 520
TaiI ACGT 4 cut(s) 165, 194, 251, 486
TaqI TCGA 2 cut(s) 237, 451
TasI AATT 2 cut(s) 207, 509
TfiI GAWTC 2 cut(s) 94, 466
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 4 cut(s) 39, 350, 543, 570
TseI GCWGC 4 cut(s) 354, 357, 392, 428
TspRI CASTG 4 cut(s) 39, 350, 543, 570
VpaK11BI GGWCC 2 cut(s) 494, 524
XbaI TCTAGA 1 cut(s) 97
XceI RCATGY 2 cut(s) 90, 114
XspI CTAG 3 cut(s) 74, 98, 315
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.