FvH4_7g29560

PAR1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008412
Physical Location & Seq
Reverse (-)
21712580 .. 21715890
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29560.t1

Sequence Viewer

Length: 696 bp
ATGGTATTCGGTGTTAATTGGATCATGCGATCCCTTCGGAAGTTTCCATCATCAACTAGTTCAGAATCAAAGAGATTGATGAATCCAGCTATACCGGCGGTTATGGCTTCTAAGTTCGGCTTCATGACCCTTGCAGTCCTCGCTCTTGCGCTAGCCGTTTGCGTGCAAGGCACTCTAGGGGGAGTGACATGTGAGAATCTAGACGAAAGCACTTGTGCATTCGCGGTGTCATCATCAGCCAAACGTTGTGTGCTTGAGAAGCACATAAAGAGGAGCGGAGAGGAAGCATACACATGCCGCACATCTGAAATTGAAGCAGATAAACTGAAGGACTGGATCGAAAGCGAAGAGTGCATCAAATCTTGCGGCCTAGACCGCAAGTCCTACGGAATCTCATCCGACTCTCTCCTCGAGTCTTGCTTCGCACAAAAGCTTTGCTCTCCTCAGTGCTACGGCAGCTGCCCCAACATTGTTGACCTTTACTTCAACCTCGCAGCTGGTGAAGGGGTGTTCCTTCCAAAACTATGTGAAGCACAAGGAGCAAATGCTCGTAGGCAAATGTCGGAGATCCGAAGCTCTGGATTTGTTGCACCAGGACCAGTAAAGTCAGCTAATTTGGTAGCAGAGGCACCAGTAAACTACATGAACTTGAAAGCTGAATACTACGTTGCTCCTGCACAGGCACCAGCCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAR1

Protein Analysis

232

Amino Acids

24.98

Weight (kDa)

7.4

Isoelectric Point (pI)

64.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAR1 PF06521 62 - 228 8.4e-74 PAR1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 628, 682
AccBSI CCGCTC 1 cut(s) 276
AccII CGCG 1 cut(s) 224
AciI CCGC 6 cut(s) 98, 224, 276, 298, 366, 376
AclI AACGTT 1 cut(s) 244
AclWI GGATC 4 cut(s) 24, 29, 344, 562
AcuI CTGAAG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 3 cut(s) 314, 487, 652
AhdI GACNNNNNGTC 1 cut(s) 379
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 7 cut(s) 89, 433, 459, 497, 576, 611, 656
AluI AGCT 7 cut(s) 89, 433, 459, 497, 576, 611, 656
AlwI GGATC 4 cut(s) 24, 29, 344, 562
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 3 cut(s) 456, 459, 494
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 596
AsuHPI GGTGA 1 cut(s) 512
AsuNHI GCTAGC 1 cut(s) 151
AvaI CYCGRG 1 cut(s) 410
AvaII GGWCC 1 cut(s) 596
BanI GGYRCC 2 cut(s) 628, 682
BbvI GCAGC 3 cut(s) 446, 468, 506
BccI CCATC 1 cut(s) 55
BceAI ACGGC 2 cut(s) 140, 469
BciT130I CCWGG 1 cut(s) 594
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 5 cut(s) 57, 152, 176, 200, 371
BisI GCNGC 5 cut(s) 298, 367, 457, 460, 495
BlsI GCNGC 5 cut(s) 299, 368, 458, 461, 496
Bme1390I CCNGG 1 cut(s) 594
Bme18I GGWCC 1 cut(s) 596
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 2 cut(s) 630, 684
BmrFI CCNGG 1 cut(s) 594
BmsI GCATC 1 cut(s) 363
BmtI GCTAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 3 cut(s) 338, 599, 632
BseBI CCWGG 1 cut(s) 594
BseGI GGATG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 3 cut(s) 338, 599, 632
BseRI GAGGAG 3 cut(s) 286, 398, 432
BseXI GCAGC 3 cut(s) 446, 468, 506
BsgI GTGCAG 1 cut(s) 660
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 369
BshNI GGYRCC 2 cut(s) 628, 682
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 95
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 1 cut(s) 369
BsoBI CYCGRG 1 cut(s) 410
Bsp143I GATC 4 cut(s) 21, 29, 336, 567
BspACI CCGC 6 cut(s) 98, 224, 276, 298, 366, 376
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 457
BspFNI CGCG 1 cut(s) 224
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 630, 684
BspOI GCTAGC 1 cut(s) 155
BspPI GGATC 4 cut(s) 24, 29, 344, 562
BspT107I GGYRCC 2 cut(s) 628, 682
BsrBI CCGCTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 3 cut(s) 338, 599, 632
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 4 cut(s) 21, 29, 336, 567
Bst2UI CCWGG 1 cut(s) 594
Bst6I CTCTTC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 153, 164
BstDEI CTNAG 2 cut(s) 111, 444
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 4 cut(s) 24, 32, 339, 570
BstMBI GATC 4 cut(s) 21, 29, 336, 567
BstMWI GCNNNNNNNGC 9 cut(s) 95, 104, 140, 168, 259, 351, 375, 456, 539
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 2 cut(s) 192, 297
BstSCI CCNGG 1 cut(s) 592
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 3 cut(s) 446, 468, 506
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
BsuRI GGCC 1 cut(s) 369
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 452
Cac8I GCNNGC 2 cut(s) 153, 164
CciI TCATGA 1 cut(s) 123
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 596
CviAII CATG 5 cut(s) 25, 124, 189, 294, 643
DdeI CTNAG 2 cut(s) 111, 444
DpnI GATC 4 cut(s) 23, 31, 338, 569
DpnII GATC 4 cut(s) 21, 29, 336, 567
DriI GACNNNNNGTC 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 342
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 342
Eco47I GGWCC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 592
FaeI CATG 5 cut(s) 28, 127, 192, 297, 646
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 5 cut(s) 24, 123, 188, 293, 642
Fnu4HI GCNGC 5 cut(s) 298, 367, 457, 460, 495
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 5 cut(s) 298, 367, 457, 460, 495
FspBI CTAG 5 cut(s) 57, 152, 176, 200, 371
GlaI GCGC 1 cut(s) 150
GluI GCNGC 5 cut(s) 298, 367, 457, 460, 495
HaeIII GGCC 1 cut(s) 369
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 151
Hin1II CATG 5 cut(s) 28, 127, 192, 297, 646
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 6 cut(s) 65, 82, 196, 390, 401, 413
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 2 cut(s) 475, 637
Hpy188I TCNGA 6 cut(s) 39, 64, 307, 400, 565, 572
Hpy188III TCNNGA 3 cut(s) 124, 200, 579
Hpy8I GTNNAC 2 cut(s) 475, 637
HpyAV CCTTC 4 cut(s) 44, 322, 497, 524
HpyCH4IV ACGT 2 cut(s) 244, 666
HpyCH4V TGCA 6 cut(s) 134, 166, 218, 354, 590, 677
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 104, 140, 168, 259, 351, 375, 456, 539
HpyF3I CTNAG 2 cut(s) 111, 444
HpySE526I ACGT 2 cut(s) 244, 666
Hsp92II CATG 5 cut(s) 28, 127, 192, 297, 646
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 4 cut(s) 21, 29, 336, 567
LmnI GCTCC 3 cut(s) 273, 539, 676
Lsp1109I GCAGC 3 cut(s) 446, 468, 506
LweI GCATC 1 cut(s) 363
MaeI CTAG 5 cut(s) 57, 152, 176, 200, 371
MaeII ACGT 2 cut(s) 244, 666
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 23, 31, 338, 569
MbiI CCGCTC 1 cut(s) 276
MboI GATC 4 cut(s) 21, 29, 336, 567
MboII GAAGA 1 cut(s) 359
MflI RGATCY 1 cut(s) 567
MluCI AATT 3 cut(s) 16, 309, 613
MlyI GAGTC 2 cut(s) 395, 422
MmeI TCCRAC 2 cut(s) 423, 543
MnlI CCTC 7 cut(s) 149, 264, 274, 419, 453, 500, 619
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 292
MspA1I CMGCKG 2 cut(s) 459, 497
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 9 cut(s) 95, 104, 140, 168, 259, 351, 375, 456, 539
NdeII GATC 4 cut(s) 21, 29, 336, 567
NheI GCTAGC 1 cut(s) 151
NlaIII CATG 5 cut(s) 28, 127, 192, 297, 646
NlaIV GGNNCC 2 cut(s) 630, 684
NmuCI GTSAC 1 cut(s) 184
NspI RCATGY 2 cut(s) 192, 297
PaeR7I CTCGAG 1 cut(s) 410
PagI TCATGA 1 cut(s) 123
PciI ACATGT 1 cut(s) 188
PctI GAATGC 1 cut(s) 218
PfeI GAWTC 4 cut(s) 65, 82, 196, 390
PkrI GCNGC 5 cut(s) 299, 368, 458, 461, 496
PleI GAGTC 2 cut(s) 395, 421
PpsI GAGTC 2 cut(s) 395, 421
PscI ACATGT 1 cut(s) 188
Psp1406I AACGTT 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspN4I GGNNCC 2 cut(s) 630, 684
PspPI GGNCC 1 cut(s) 596
PspXI VCTCGAGB 1 cut(s) 410
PsuI RGATCY 1 cut(s) 567
PvuII CAGCTG 2 cut(s) 459, 497
RseI CAYNNNNRTG 1 cut(s) 292
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 5 cut(s) 298, 367, 457, 460, 495
Sau3AI GATC 4 cut(s) 21, 29, 336, 567
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 2 cut(s) 395, 422
ScrFI CCNGG 1 cut(s) 594
SfaNI GCATC 1 cut(s) 363
Sfr274I CTCGAG 1 cut(s) 410
SinI GGWCC 1 cut(s) 596
SlaI CTCGAG 1 cut(s) 410
SmiMI CAYNNNNRTG 1 cut(s) 292
SmlI CTYRAG 2 cut(s) 254, 410
SmoI CTYRAG 2 cut(s) 254, 410
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 3 cut(s) 16, 309, 613
SsiI CCGC 6 cut(s) 98, 224, 276, 298, 366, 376
SspMI CTAG 5 cut(s) 57, 152, 176, 200, 371
StyD4I CCNGG 1 cut(s) 592
TaiI ACGT 2 cut(s) 247, 669
TaqI TCGA 2 cut(s) 339, 411
TasI AATT 3 cut(s) 16, 309, 613
TauI GCSGC 2 cut(s) 300, 369
TfiI GAWTC 4 cut(s) 65, 82, 196, 390
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 452
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 3 cut(s) 456, 459, 494
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 95, 112, 659
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 596
XbaI TCTAGA 1 cut(s) 199
XceI RCATGY 2 cut(s) 192, 297
XhoI CTCGAG 1 cut(s) 410
XspI CTAG 5 cut(s) 57, 152, 176, 200, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.