Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006369.1

Orthogroup ID

OG0018506

Physical Location & Seq

Genomic Coordinates Forward (+)

55243 .. 62021

Gene Structure 6779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006369.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgcaaaaatatcagtgtctcatcactcaccctagtcctcgagggttggttgcagccacacagttggctgtgagtggtgccaaggttttggttttagagaagcatgtggttcctggtgggagctctggctattatgagagggatggttatacattcgatgtcgagtttcctgtcctgattggtctcggcgataagtttgttaccttcattttatttttaggaaagctgttaaaagaagacgaccttcctaaagaagaggaaagatttcagagagtttatgttaagtctccatcttttttttccattcacaagggtgtcaaatctgaggctctgccttcagatacagattgccaccactttgtgcttaaggacgattggacaaggttggacgagccatatggaagtttattcataagtattccaactgttctggattcatcgttggctccagaagggcaccatattcttcacatatttacgacctcatcctttgaagactgggaggatttcttggtcgttgtgcctgttgaggaacattgggcctctgccaattctgttgtggttgaaaaggtgcacgatactgttgttgtggtgcataaacctgttgctactaaggacgaaactgaggttgctgatttggacgaaattgcacagatggaacttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

222

Amino Acids

24.85

Weight (kDa)

4.92

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018506)

Species	Orthologous Gene IDs
malus_domestica	MD12G1045700.v1.1
rosa_multiflora	Rmu_sc0002283.1_g000006 Rmu_sc0006369.1_g000009
rosa_roxburghii	Rroxscaffold_6G00404720
rosa_rugosa	Rorug02G0199400 Rorug04G0032700 Rorug05G0069800 Rorug06G0386200 Rorug07G0081500
rosa_samantha	Rh2CG259800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	77, 456
AcuI	CTGAAG	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	361
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	494, 566
AjnI	CCWGG	1 cut(s)	112
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	2 cut(s)	123, 226
AluI	AGCT	2 cut(s)	123, 226
Alw21I	GWGCWC	2 cut(s)	125, 576
Alw26I	GTCTC	3 cut(s)	23, 188, 291
Alw44I	GTGCAC	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	1 cut(s)	540
ApaLI	GTGCAC	1 cut(s)	572
ApeKI	GCWGC	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	39
BaeGI	GKGCMC	2 cut(s)	459, 576
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BanI	GGYRCC	2 cut(s)	77, 456
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	243, 501
Bbv12I	GWGCWC	2 cut(s)	125, 576
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	3 cut(s)	137, 298, 649
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	23, 188, 291
BfaI	CTAG	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	365
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	4 cut(s)	79, 111, 447, 458
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	508
BmuI	ACTGGG	1 cut(s)	508
BpiI	GAAGAC	2 cut(s)	243, 501
BpmI	CTGGAG	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	148, 485
BseMII	CTCAG	2 cut(s)	315, 615
BseNI	ACTGG	1 cut(s)	503
BseSI	GKGCMC	2 cut(s)	459, 576
BseXI	GCAGC	1 cut(s)	65
BshFI	GGCC	1 cut(s)	542
BshNI	GGYRCC	2 cut(s)	77, 456
BsiHKAI	GWGCWC	2 cut(s)	125, 576
BsiHKCI	CYCGRG	1 cut(s)	39
BsmAI	GTCTC	3 cut(s)	23, 188, 291
BsnI	GGCC	1 cut(s)	542
Bso31I	GGTCTC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	3 cut(s)	125, 459, 576
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	2 cut(s)	316, 616
BspLI	GGNNCC	4 cut(s)	79, 111, 447, 458
BspT107I	GGYRCC	2 cut(s)	77, 456
BspTI	CTTAAG	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	63, 427, 583
Bst6I	CTCTTC	1 cut(s)	249
BstAFI	CTTAAG	1 cut(s)	365
BstDEI	CTNAG	3 cut(s)	324, 612, 624
BstF5I	GGATG	2 cut(s)	148, 485
BstMAI	GTCTC	3 cut(s)	23, 188, 291
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	112
BstSLI	GKGCMC	2 cut(s)	459, 576
BstV1I	GCAGC	1 cut(s)	65
BstV2I	GAAGAC	2 cut(s)	243, 501
BstXI	CCANNNNNNTGG	2 cut(s)	64, 88
BsuRI	GGCC	1 cut(s)	542
BtsCI	GGATG	2 cut(s)	148, 485
BtsIMutI	CAGTG	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	540
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	9 cut(s)	56, 68, 123, 129, 226, 329, 394, 446, 542
CviKI_1	RGCY	9 cut(s)	56, 68, 123, 129, 226, 329, 394, 446, 542
DdeI	CTNAG	3 cut(s)	324, 612, 624
DraIII	CACNNNGTG	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	107
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	1 cut(s)	103
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	155, 472
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	542
Hin1II	CATG	1 cut(s)	107
HinfI	GANTC	1 cut(s)	434
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	3 cut(s)	270, 325, 340
Hpy188III	TCNNGA	3 cut(s)	175, 431, 449
Hpy8I	GTNNAC	1 cut(s)	574
HpyAV	CCTTC	4 cut(s)	214, 254, 345, 446
HpyCH4III	ACNGT	3 cut(s)	63, 427, 583
HpyCH4V	TGCA	5 cut(s)	4, 53, 574, 595, 650
HpyF3I	CTNAG	3 cut(s)	324, 612, 624
Hsp92II	CATG	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	120, 451
Lsp1109I	GCAGC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	248, 266, 458, 506
MhlI	GDGCHC	3 cut(s)	125, 459, 576
MluCI	AATT	2 cut(s)	550, 645
MmeI	TCCRAC	2 cut(s)	366, 446
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	3 cut(s)	230, 282, 366
MslI	CAYNNNNRTG	1 cut(s)	312
MspCI	CTTAAG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	397
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	4 cut(s)	79, 111, 447, 458
NmeAIII	GCCGAG	1 cut(s)	165
NspI	RCATGY	1 cut(s)	107
OliI	CACNNNNGTG	1 cut(s)	312
PaeR7I	CTCGAG	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	4 cut(s)	79, 111, 447, 458
PspPI	GGNCC	1 cut(s)	540
PspXI	VCTCGAGB	1 cut(s)	39
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	230, 282, 366
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	540
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	3 cut(s)	125, 459, 576
Sfr274I	CTCGAG	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	39, 365
SmoI	CTYRAG	2 cut(s)	39, 365
Sse9I	AATT	2 cut(s)	550, 645
SspMI	CTAG	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	63, 427, 583
TaqI	TCGA	3 cut(s)	40, 156, 162
TasI	AATT	2 cut(s)	550, 645
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	3 cut(s)	230, 282, 366
Tru9I	TTAA	3 cut(s)	230, 282, 366
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	196, 400, 426
TspRI	CASTG	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	365
VneI	GTGCAC	1 cut(s)	572
XceI	RCATGY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.