Rmu_sc0002283.1_g000006

Prolycopene isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002283.1
OG0018506
Physical Location & Seq
Reverse (-)
19324 .. 20265
942 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 942 bp
atgatcaatgcgagcatggttatgtgcgaaaggcattatggtggaattaactaccctgttggtggtattgggggaattgcaaagtccttggcaaaaggtctggtggaacatggcagtgagatactttacaaggccaatgttactggcatcatagtcgatcagggcagagctgtaggagttaggctttcagacaggagggaattttttgccaaagccatattatcaaatgctacgagatggagtacctttggaaagctgctaaaagaagacgaccttcctaaagaagaggaaagatttcagaaagtttatgttaagtccccatcttttctttccattcacatgggtgttaaatctgaggctctgcctccagatacagattgccaccactttgtgcttgaggacgattggacaaggttagaggagccatatggaagtttattcgtaagtattccaactgttcttgattcatcgttggctccagaagggcaccatattcttcacatatttacgacctcttccattgaagactgggagggactctctcgaaaggactatgaatcaaagaaggagcttatggcagatgtgatcattagcagattagagaagatactatatccagggctcaagtcatccatcgtttttaaggaggtgggaacacctaagacacacaggcggtacctggctcgtgaacagggcacttatggaccaataccatgcggaactcccaagggcttattgggactgccattgaatacaacagccatagaaggcctttactgtgttggtgatagctgctttccgggacaaggagttagtgctgtatccttctcaggactaatgtgtgctcatcgagtagctgctgatataggccttgagaagaagtccccaatattggatgctgcccttcttcgactatatcgatggctaaggacattagtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008150 GO:0008152 GO:0016491 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
Amino_oxidase

Protein Analysis

313

Amino Acids

34.58

Weight (kDa)

7.14

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amino_oxidase PF01593 12 - 285 2.6e-07 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018506)

Species Orthologous Gene IDs
malus_domestica MD12G1045700.v1.1
rosa_multiflora Rmu_sc0002283.1_g000006 Rmu_sc0006369.1_g000009
rosa_roxburghii Rroxscaffold_6G00404720
rosa_rugosa Rorug02G0199400 Rorug04G0032700 Rorug05G0069800 Rorug06G0386200 Rorug07G0081500
rosa_samantha Rh2CG259800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 675
AccB1I GGYRCC 2 cut(s) 486, 675
AciI CCGC 2 cut(s) 673, 717
AcsI RAATTY 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 391
AfaI GTAC 2 cut(s) 244, 677
AfiI CCNNNNNNNGG 3 cut(s) 62, 806, 892
AgsI TTSAA 2 cut(s) 524, 751
AjnI CCWGG 2 cut(s) 616, 678
AleI CACNNNNGTG 1 cut(s) 342
AluBI AGCT 5 cut(s) 170, 256, 571, 792, 857
AluI AGCT 5 cut(s) 170, 256, 571, 792, 857
Alw21I GWGCWC 1 cut(s) 847
AoxI GGCC 3 cut(s) 132, 769, 868
ApeKI GCWGC 4 cut(s) 256, 792, 857, 899
ApoI RAATTY 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 294
Asp718I GGTACC 1 cut(s) 675
AspS9I GGNCC 1 cut(s) 704
AsuC2I CCSGG 1 cut(s) 801
AsuHPI GGTGA 1 cut(s) 797
AvaII GGWCC 1 cut(s) 704
BaeGI GKGCMC 2 cut(s) 489, 698
BanI GGYRCC 2 cut(s) 486, 675
BanII GRGCYC 1 cut(s) 624
BauI CACGAG 1 cut(s) 684
BbsI GAAGAC 2 cut(s) 273, 531
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 4 cut(s) 243, 779, 844, 886
BccI CCATC 4 cut(s) 231, 328, 641, 915
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 2 cut(s) 618, 680
BciVI GTATCC 1 cut(s) 832
BclI TGATCA 2 cut(s) 3, 585
BcnI CCSGG 1 cut(s) 801
BfmI CTRYAG 1 cut(s) 171
BfuI GTATCC 1 cut(s) 832
BisI GCNGC 4 cut(s) 257, 793, 858, 900
BlsI GCNGC 4 cut(s) 258, 794, 859, 901
Bme1390I CCNGG 3 cut(s) 618, 680, 801
Bme18I GGWCC 1 cut(s) 704
BmgT120I GGNCC 1 cut(s) 704
BmiI GGNNCC 4 cut(s) 423, 477, 488, 677
BmrFI CCNGG 3 cut(s) 618, 680, 801
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 2 cut(s) 156, 886
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 2 cut(s) 273, 531
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BpmI CTGGAG 2 cut(s) 351, 462
Bpu10I CCTNAGC 1 cut(s) 926
BpuEI CTTGAG 3 cut(s) 416, 608, 893
BpuMI CCSGG 1 cut(s) 801
Bsa29I ATCGAT 1 cut(s) 919
BsaJI CCNNGG 3 cut(s) 87, 617, 726
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 806, 892
Bse1I ACTGG 2 cut(s) 148, 533
BseBI CCWGG 2 cut(s) 618, 680
BseCI ATCGAT 1 cut(s) 919
BseDI CCNNGG 3 cut(s) 87, 617, 726
BseGI GGATG 2 cut(s) 629, 901
BseLI CCNNNNNNNGG 3 cut(s) 62, 806, 892
BseMII CTCAG 2 cut(s) 345, 843
BseNI ACTGG 2 cut(s) 148, 533
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 2 cut(s) 489, 698
BseXI GCAGC 4 cut(s) 243, 779, 844, 886
BshFI GGCC 3 cut(s) 134, 771, 870
BshNI GGYRCC 2 cut(s) 486, 675
BshVI ATCGAT 1 cut(s) 919
BsiHKAI GWGCWC 1 cut(s) 847
BsiSI CCGG 1 cut(s) 800
BslFI GGGAC 5 cut(s) 301, 549, 753, 816, 868
BslI CCNNNNNNNGG 3 cut(s) 62, 806, 892
BsmFI GGGAC 5 cut(s) 301, 549, 753, 816, 868
BsnI GGCC 3 cut(s) 134, 771, 870
Bsp1286I GDGCHC 4 cut(s) 489, 624, 698, 847
Bsp143I GATC 3 cut(s) 3, 157, 585
BspACI CCGC 2 cut(s) 673, 717
BspANI GGCC 3 cut(s) 134, 771, 870
BspCNI CTCAG 2 cut(s) 346, 842
BspDI ATCGAT 1 cut(s) 919
BspLI GGNNCC 4 cut(s) 423, 477, 488, 677
BspT107I GGYRCC 2 cut(s) 486, 675
BsrI ACTGG 2 cut(s) 148, 533
BssECI CCNNGG 3 cut(s) 87, 617, 726
BssMI GATC 3 cut(s) 3, 157, 585
BssSI CACGAG 1 cut(s) 684
BssT1I CCWWGG 2 cut(s) 87, 726
Bst2BI CACGAG 1 cut(s) 684
Bst2UI CCWGG 2 cut(s) 618, 680
Bst4CI ACNGT 2 cut(s) 457, 779
Bst6I CTCTTC 2 cut(s) 279, 520
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 4 cut(s) 354, 660, 829, 926
BstF5I GGATG 2 cut(s) 629, 901
BstKTI GATC 3 cut(s) 6, 160, 588
BstMBI GATC 3 cut(s) 3, 157, 585
BstNI CCWGG 2 cut(s) 618, 680
BstSCI CCNGG 3 cut(s) 616, 678, 799
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 2 cut(s) 489, 698
BstV1I GCAGC 4 cut(s) 243, 779, 844, 886
BstV2I GAAGAC 2 cut(s) 273, 531
BstXI CCANNNNNNTGG 1 cut(s) 340
Bsu15I ATCGAT 1 cut(s) 919
BsuI GTATCC 1 cut(s) 832
BsuRI GGCC 3 cut(s) 134, 771, 870
BsuTUI ATCGAT 1 cut(s) 919
BtsCI GGATG 2 cut(s) 629, 901
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 704
ClaI ATCGAT 1 cut(s) 919
Csp6I GTAC 2 cut(s) 243, 676
CviAII CATG 4 cut(s) 16, 110, 340, 714
CviQI GTAC 2 cut(s) 243, 676
DdeI CTNAG 4 cut(s) 354, 660, 829, 926
DpnI GATC 3 cut(s) 5, 159, 587
DpnII GATC 3 cut(s) 3, 157, 585
DraIII CACNNNGTG 1 cut(s) 391
Eam1104I CTCTTC 2 cut(s) 279, 520
EarI CTCTTC 2 cut(s) 279, 520
Eco130I CCWWGG 2 cut(s) 87, 726
Eco147I AGGCCT 2 cut(s) 771, 870
Eco24I GRGCYC 1 cut(s) 624
Eco47I GGWCC 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 616, 678
EcoT14I CCWWGG 2 cut(s) 87, 726
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 2 cut(s) 87, 726
FaeI CATG 4 cut(s) 19, 113, 343, 717
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 5 cut(s) 301, 549, 753, 816, 868
FatI CATG 4 cut(s) 15, 109, 339, 713
FauNDI CATATG 1 cut(s) 427
FbaI TGATCA 2 cut(s) 3, 585
Fnu4HI GCNGC 4 cut(s) 257, 793, 858, 900
FokI GGATG 2 cut(s) 616, 908
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 4 cut(s) 257, 793, 858, 900
GluI GCNGC 4 cut(s) 257, 793, 858, 900
GsuI CTGGAG 2 cut(s) 351, 462
HaeIII GGCC 3 cut(s) 134, 771, 870
HapII CCGG 1 cut(s) 800
Hin1II CATG 4 cut(s) 19, 113, 343, 717
HinfI GANTC 3 cut(s) 464, 537, 557
HpaII CCGG 1 cut(s) 800
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 1 cut(s) 689
Hpy188I TCNGA 3 cut(s) 190, 300, 355
Hpy188III TCNNGA 6 cut(s) 368, 461, 479, 543, 686, 831
Hpy8I GTNNAC 1 cut(s) 689
HpyAV CCTTC 6 cut(s) 284, 476, 559, 761, 835, 914
HpyCH4III ACNGT 2 cut(s) 457, 779
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 4 cut(s) 354, 660, 829, 926
Hsp92II CATG 4 cut(s) 19, 113, 343, 717
KpnI GGTACC 1 cut(s) 679
Ksp22I TGATCA 2 cut(s) 3, 585
Kzo9I GATC 3 cut(s) 3, 157, 585
LmnI GCTCC 3 cut(s) 421, 481, 568
Lsp1109I GCAGC 4 cut(s) 243, 779, 844, 886
LweI GCATC 2 cut(s) 156, 886
MaeIII GTNAC 1 cut(s) 139
MalI GATC 3 cut(s) 5, 159, 587
MboI GATC 3 cut(s) 3, 157, 585
MboII GAAGA 8 cut(s) 278, 296, 488, 507, 536, 616, 889, 899
MhlI GDGCHC 4 cut(s) 489, 624, 698, 847
MluCI AATT 3 cut(s) 45, 75, 200
MlyI GAGTC 1 cut(s) 531
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 9 cut(s) 189, 280, 349, 375, 391, 412, 523, 526, 640
MroXI GAANNNNTTC 1 cut(s) 294
MseI TTAA 4 cut(s) 48, 312, 348, 642
MslI CAYNNNNRTG 6 cut(s) 20, 39, 114, 338, 342, 937
MspI CCGG 1 cut(s) 800
MspR9I CCNGG 3 cut(s) 618, 680, 801
MvaI CCWGG 2 cut(s) 618, 680
NciI CCSGG 1 cut(s) 801
NdeI CATATG 1 cut(s) 427
NdeII GATC 3 cut(s) 3, 157, 585
NlaIII CATG 4 cut(s) 19, 113, 343, 717
NlaIV GGNNCC 4 cut(s) 423, 477, 488, 677
OliI CACNNNNGTG 1 cut(s) 342
PceI AGGCCT 2 cut(s) 771, 870
PcsI WCGNNNNNNNCGW 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 464, 557
PfoI TCCNGGA 1 cut(s) 799
PkrI GCNGC 4 cut(s) 258, 794, 859, 901
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 616, 678
PspGI CCWGG 2 cut(s) 616, 678
PspN4I GGNNCC 4 cut(s) 423, 477, 488, 677
PspPI GGNCC 1 cut(s) 704
RsaI GTAC 2 cut(s) 244, 677
RsaNI GTAC 2 cut(s) 243, 676
RseI CAYNNNNRTG 6 cut(s) 20, 39, 114, 338, 342, 937
SaqAI TTAA 4 cut(s) 48, 312, 348, 642
SatI GCNGC 4 cut(s) 257, 793, 858, 900
Sau3AI GATC 3 cut(s) 3, 157, 585
Sau96I GGNCC 1 cut(s) 704
SchI GAGTC 1 cut(s) 531
ScrFI CCNGG 3 cut(s) 618, 680, 801
SduI GDGCHC 4 cut(s) 489, 624, 698, 847
SfaNI GCATC 2 cut(s) 156, 886
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 704
SmiMI CAYNNNNRTG 6 cut(s) 20, 39, 114, 338, 342, 937
SmlI CTYRAG 3 cut(s) 395, 623, 872
SmoI CTYRAG 3 cut(s) 395, 623, 872
Sse9I AATT 3 cut(s) 45, 75, 200
SseBI AGGCCT 2 cut(s) 771, 870
SsiI CCGC 2 cut(s) 673, 717
SspI AATATT 1 cut(s) 891
StuI AGGCCT 2 cut(s) 771, 870
StyD4I CCNGG 3 cut(s) 616, 678, 799
StyI CCWWGG 2 cut(s) 87, 726
TaaI ACNGT 2 cut(s) 457, 779
TaqI TCGA 5 cut(s) 156, 544, 850, 910, 919
TasI AATT 3 cut(s) 45, 75, 200
TfiI GAWTC 2 cut(s) 464, 557
Tru1I TTAA 4 cut(s) 48, 312, 348, 642
Tru9I TTAA 4 cut(s) 48, 312, 348, 642
TscAI CASTG 1 cut(s) 121
TseI GCWGC 4 cut(s) 256, 792, 857, 899
TspDTI ATGAA 2 cut(s) 456, 570
TspRI CASTG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 704
XapI RAATTY 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
XmnI GAANNNNTTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.