Rmu_sc0002305.1_g000002

Guanine nucleotide-binding protein subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002305.1
OG0010337
Physical Location & Seq
Forward (+)
2814 .. 8227
5414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002305.1_g000002.1.cds

Sequence Viewer

Length: 1134 bp
atgtcagtcgccgagctcaaggatcgacacgcggcggcaagcgagacggtcaactcgctccgggagcggttgaagcagaagcgagcctcgttgctggacaccgatgtggctggatatgcaaggtctcaggggaaggctgcgcttacttttggccctactgatcttgtttgctgcagaacattgcagggtcataccgggaaggtgtattcattagattggactccagaaaggaatcgaattgttagtgcatcccaagatgggagattgatagtctggaatgcactaacaagccagaagacccatgccataaagctgccttgtgcatgggtcatgacttgtgctttttcaccaactggtcaatctgttgcttgtggtggtcttgatagtgtttgctcgatattcaacttgagttctccatgcgacaaggatgggaatctgcccgtgtcaagaacgcttaatgggcataagggttatgtttctgcttgccaatatgttccagatgaagatactcacctgattactggatccggtgaccaaacatgtgtcttgtgggatattactactggactcaggacttcagtttttggaggcgagtttcagtctggacacactgcagacgtactgagtgtctccatctgtcaaaccaactcgagaatgtttgtatctggttcttgtgatgcaaccgcgcgattgtgggacactcgtgttgcaagtcgagcagtgcggacttttcatggtcatgagggagatgtcaatgcagtgaagttctttccagatggtaatagatttggaactgggtcagatgatggaacttgtaggttatttgacataaggactggccaccaactccaagtataccaccagcaacatggtgataatgaaagcccacctgtgaaaaccattgcattctcaatatcaggaaggcttctgtttgctggatacacaaatggtgattgctatgtatgggatactttgttggcaagggtggttttgaacttgggatctctccaaaactcacatgaggcccagattagctgtttgggtttgtcagctgatggaagtgcattgtgtactggaagttgggatactaatttaaagatatgggcttttggagggcataggaaaataatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0001101 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005834 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009787 GO:0009788 GO:0009791 GO:0009814 GO:0009817 GO:0009845 GO:0009867 GO:0009898 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010033 GO:0010118 GO:0010154 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019897 GO:0019898 GO:0022414 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0030968 GO:0031234 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0072593 GO:0080008 GO:0090351 GO:0090696 GO:0098542 GO:0098552 GO:0098562 GO:0098796 GO:0098797 GO:0099402 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1902494 GO:1905360 GO:1905392 GO:1905957 GO:1905958 GO:1990234 GO:2000026 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04011 ko04014 ko04062 ko04151 ko04371 ko04713 ko04723 ko04724 ko04725 ko04726 ko04727 ko04728 ko04740 ko04744 ko04926 ko05032 ko05034 ko05167 ko05200 map04011 map04014 map04062 map04151 map04371 map04713 map04723 map04724 map04725 map04726 map04727 map04728 map04740 map04744 map04926 map05032 map05034 map05167 map05200
Pfam Domains
Protein Families
WD40

Protein Analysis

377

Amino Acids

40.8

Weight (kDa)

7.16

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34460 AT4G34460 AT4G34460 AT4G34460
fragaria_vesca FvH4_2g08680 FvH4_2g08680
malus_domestica MD05G1067400.v1.1 MD10G1077300.v1.1
prunus_persica Prupe.8G098100_v2.0.a1
pyrus_communis pycom05g05850 pycom10g06030
rosa_chinensis RchiOBHm_Chr6g0264111
rosa_laevigata RLG00000014290
rosa_multiflora Rmu_sc0002305.1_g000002
rosa_roxburghii Rroxscaffold_176G00431420 Rroxscaffold_7G00203590
rosa_rugosa Rorug06G0007600
rosa_samantha Rh6AG129200 Rh6CG124200 Rh6DG111100
rosa_wichuraiana Rw6G011170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 67
AccI GTMKAC 1 cut(s) 855
AccII CGCG 3 cut(s) 32, 686, 688
AciI CCGC 5 cut(s) 32, 35, 67, 684, 724
AclWI GGATC 4 cut(s) 30, 519, 532, 1009
AcoI YGGCCR 1 cut(s) 838
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 2 cut(s) 621, 1072
AfiI CCNNNNNNNGG 1 cut(s) 258
AflIII ACRYGT 1 cut(s) 539
AgsI TTSAA 3 cut(s) 73, 403, 994
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 4 cut(s) 16, 313, 1035, 1052
AluI AGCT 4 cut(s) 16, 313, 1035, 1052
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 3 cut(s) 38, 129, 634
AlwI GGATC 4 cut(s) 30, 519, 532, 1009
Ama87I CYCGRG 1 cut(s) 649
AoxI GGCC 3 cut(s) 151, 838, 1023
ApeKI GCWGC 3 cut(s) 137, 171, 313
AspLEI GCGC 2 cut(s) 142, 688
AspS9I GGNCC 2 cut(s) 152, 1024
AsuC2I CCSGG 2 cut(s) 62, 196
AsuHPI GGTGA 5 cut(s) 339, 503, 542, 884, 962
AvaI CYCGRG 1 cut(s) 649
BalI TGGCCA 1 cut(s) 840
BamHI GGATCC 1 cut(s) 524
BanII GRGCYC 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 1069, 1101
BauI CACGAG 1 cut(s) 702
BbsI GAAGAC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 3 cut(s) 124, 158, 300
BccI CCATC 6 cut(s) 251, 422, 641, 770, 800, 1049
BciVI GTATCC 3 cut(s) 932, 961, 1078
BcnI CCSGG 2 cut(s) 62, 196
BcoDI GTCTC 3 cut(s) 38, 129, 634
BfmI CTRYAG 2 cut(s) 172, 612
BfuI GTATCC 3 cut(s) 932, 961, 1078
BisI GCNGC 5 cut(s) 33, 36, 138, 172, 314
BlsI GCNGC 5 cut(s) 34, 37, 139, 173, 315
Bme1390I CCNGG 2 cut(s) 62, 196
BmeT110I CYCGRG 1 cut(s) 649
BmgT120I GGNCC 2 cut(s) 152, 1024
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 2 cut(s) 62, 196
BmrI ACTGGG 1 cut(s) 804
BmsI GCATC 2 cut(s) 257, 667
BmuI ACTGGG 1 cut(s) 804
BpiI GAAGAC 1 cut(s) 302
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 2 cut(s) 62, 196
BsaBI GATNNNNATC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 527
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 6 cut(s) 358, 526, 568, 799, 841, 1078
Bse3DI GCAATG 2 cut(s) 179, 900
Bse8I GATNNNNATC 1 cut(s) 432
BseGI GGATG 2 cut(s) 248, 433
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 2 cut(s) 179, 900
BseMII CTCAG 3 cut(s) 140, 583, 614
BseNI ACTGG 6 cut(s) 358, 526, 568, 799, 841, 1078
BseXI GCAGC 3 cut(s) 124, 158, 300
Bsh1236I CGCG 3 cut(s) 32, 686, 688
BshFI GGCC 3 cut(s) 153, 840, 1025
BsiHKAI GWGCWC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 649
BsiSI CCGG 3 cut(s) 61, 195, 528
BslFI GGGAC 1 cut(s) 710
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 3 cut(s) 38, 129, 634
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 710
BsmI GAATGC 2 cut(s) 283, 905
BsnI GGCC 3 cut(s) 153, 840, 1025
Bso31I GGTCTC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 4 cut(s) 22, 160, 524, 1001
BspACI CCGC 5 cut(s) 32, 35, 67, 684, 724
BspANI GGCC 3 cut(s) 153, 840, 1025
BspCNI CTCAG 3 cut(s) 139, 582, 615
BspFNI CGCG 3 cut(s) 32, 686, 688
BspHI TCATGA 2 cut(s) 330, 739
BspLI GGNNCC 1 cut(s) 526
BspMAI CTGCAG 2 cut(s) 176, 616
BspPI GGATC 4 cut(s) 30, 519, 532, 1009
BspTNI GGTCTC 1 cut(s) 129
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 2 cut(s) 179, 900
BsrI ACTGG 6 cut(s) 358, 526, 568, 799, 841, 1078
BssMI GATC 4 cut(s) 22, 160, 524, 1001
BssNAI GTATAC 1 cut(s) 856
BssSI CACGAG 1 cut(s) 702
Bst1107I GTATAC 1 cut(s) 856
Bst2BI CACGAG 1 cut(s) 702
Bst4CI ACNGT 1 cut(s) 49
BstC8I GCNNGC 3 cut(s) 40, 84, 484
BstDEI CTNAG 3 cut(s) 126, 569, 623
BstEII GGTNACC 1 cut(s) 530
BstF5I GGATG 2 cut(s) 248, 433
BstFNI CGCG 3 cut(s) 32, 686, 688
BstHHI GCGC 2 cut(s) 142, 688
BstKTI GATC 4 cut(s) 25, 163, 527, 1004
BstMAI GTCTC 3 cut(s) 38, 129, 634
BstMBI GATC 4 cut(s) 22, 160, 524, 1001
BstMWI GCNNNNNNNGC 5 cut(s) 64, 73, 116, 460, 716
BstNSI RCATGY 1 cut(s) 543
BstPI GGTNACC 1 cut(s) 530
BstSCI CCNGG 2 cut(s) 60, 194
BstSFI CTRYAG 2 cut(s) 172, 612
BstUI CGCG 3 cut(s) 32, 686, 688
BstV1I GCAGC 3 cut(s) 124, 158, 300
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 2 cut(s) 524, 1001
BstXI CCANNNNNNTGG 1 cut(s) 869
BstYI RGATCY 2 cut(s) 524, 1001
BstZ17I GTATAC 1 cut(s) 856
BsuI GTATCC 3 cut(s) 932, 961, 1078
BsuRI GGCC 3 cut(s) 153, 840, 1025
BtsCI GGATG 2 cut(s) 248, 433
BtsI GCAGTG 3 cut(s) 609, 726, 765
BtsIMutI CAGTG 3 cut(s) 609, 726, 765
Cac8I GCNNGC 3 cut(s) 40, 84, 484
CciI TCATGA 2 cut(s) 330, 739
CfoI GCGC 2 cut(s) 142, 688
Cfr13I GGNCC 2 cut(s) 152, 1024
Csp6I GTAC 2 cut(s) 620, 1071
CviAII CATG 9 cut(s) 302, 324, 331, 417, 540, 734, 740, 869, 1019
CviQI GTAC 2 cut(s) 620, 1071
DdeI CTNAG 3 cut(s) 126, 569, 623
DpnI GATC 4 cut(s) 24, 162, 526, 1003
DpnII GATC 4 cut(s) 22, 160, 524, 1001
DraI TTTAAA 1 cut(s) 1095
EaeI YGGCCR 1 cut(s) 838
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 649
Eco91I GGTNACC 1 cut(s) 530
EcoICRI GAGCTC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 530
EcoT38I GRGCYC 1 cut(s) 18
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 9 cut(s) 305, 327, 334, 420, 543, 737, 743, 872, 1022
FaqI GGGAC 1 cut(s) 710
FatI CATG 9 cut(s) 301, 323, 330, 416, 539, 733, 739, 868, 1018
FblI GTMKAC 1 cut(s) 855
Fnu4HI GCNGC 5 cut(s) 33, 36, 138, 172, 314
FokI GGATG 2 cut(s) 235, 440
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 5 cut(s) 33, 36, 138, 172, 314
GlaI GCGC 2 cut(s) 141, 687
GluI GCNGC 5 cut(s) 33, 36, 138, 172, 314
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 3 cut(s) 153, 840, 1025
HapII CCGG 3 cut(s) 61, 195, 528
HhaI GCGC 2 cut(s) 142, 688
Hin1II CATG 9 cut(s) 305, 327, 334, 420, 543, 737, 743, 872, 1022
Hin6I GCGC 2 cut(s) 140, 686
HinP1I GCGC 2 cut(s) 140, 686
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HinfI GANTC 4 cut(s) 220, 232, 433, 567
HpaII CCGG 3 cut(s) 61, 195, 528
HphI GGTGA 5 cut(s) 339, 503, 542, 884, 962
Hpy166II GTNNAC 3 cut(s) 52, 856, 1071
Hpy188I TCNGA 1 cut(s) 802
Hpy8I GTNNAC 3 cut(s) 52, 856, 1071
HpyAV CCTTC 3 cut(s) 127, 193, 915
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 618
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 73, 116, 460, 716
HpyF3I CTNAG 3 cut(s) 126, 569, 623
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 9 cut(s) 305, 327, 334, 420, 543, 737, 743, 872, 1022
HspAI GCGC 2 cut(s) 140, 686
Kzo9I GATC 4 cut(s) 22, 160, 524, 1001
LmnI GCTCC 2 cut(s) 63, 64
Lsp1109I GCAGC 3 cut(s) 124, 158, 300
LweI GCATC 2 cut(s) 257, 667
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 530
MalI GATC 4 cut(s) 24, 162, 526, 1003
MbiI CCGCTC 1 cut(s) 67
MboI GATC 4 cut(s) 22, 160, 524, 1001
MboII GAAGA 2 cut(s) 307, 515
MflI RGATCY 2 cut(s) 524, 1001
MhlI GDGCHC 1 cut(s) 18
MlsI TGGCCA 1 cut(s) 840
MluCI AATT 3 cut(s) 237, 1090, 1128
MluNI TGGCCA 1 cut(s) 840
MlyI GAGTC 2 cut(s) 214, 561
MnlI CCTC 5 cut(s) 97, 581, 736, 1015, 1106
Mox20I TGGCCA 1 cut(s) 840
MscI TGGCCA 1 cut(s) 840
MseI TTAA 2 cut(s) 456, 1094
MslI CAYNNNNRTG 2 cut(s) 104, 738
Msp20I TGGCCA 1 cut(s) 840
MspA1I CMGCKG 1 cut(s) 1052
MspI CCGG 3 cut(s) 61, 195, 528
MspR9I CCNGG 2 cut(s) 62, 196
Mva1269I GAATGC 2 cut(s) 283, 905
MvnI CGCG 3 cut(s) 32, 686, 688
MwoI GCNNNNNNNGC 5 cut(s) 64, 73, 116, 460, 716
NciI CCSGG 2 cut(s) 62, 196
NdeII GATC 4 cut(s) 22, 160, 524, 1001
NlaIII CATG 9 cut(s) 305, 327, 334, 420, 543, 737, 743, 872, 1022
NlaIV GGNNCC 1 cut(s) 526
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 530
NspI RCATGY 1 cut(s) 543
OliI CACNNNNGTG 1 cut(s) 104
PaeR7I CTCGAG 1 cut(s) 649
PagI TCATGA 2 cut(s) 330, 739
PciI ACATGT 1 cut(s) 539
PctI GAATGC 2 cut(s) 283, 905
PfeI GAWTC 2 cut(s) 232, 433
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 5 cut(s) 34, 37, 139, 173, 315
PleI GAGTC 2 cut(s) 214, 561
PpsI GAGTC 2 cut(s) 214, 561
PscI ACATGT 1 cut(s) 539
Psp124BI GAGCTC 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 2 cut(s) 152, 1024
PstI CTGCAG 2 cut(s) 176, 616
PsuI RGATCY 2 cut(s) 524, 1001
PvuII CAGCTG 1 cut(s) 1052
RsaI GTAC 2 cut(s) 621, 1072
RsaNI GTAC 2 cut(s) 620, 1071
RseI CAYNNNNRTG 2 cut(s) 104, 738
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 456, 1094
SatI GCNGC 5 cut(s) 33, 36, 138, 172, 314
Sau3AI GATC 4 cut(s) 22, 160, 524, 1001
Sau96I GGNCC 2 cut(s) 152, 1024
SchI GAGTC 2 cut(s) 214, 561
ScrFI CCNGG 2 cut(s) 62, 196
SduI GDGCHC 1 cut(s) 18
SfaNI GCATC 2 cut(s) 257, 667
SfcI CTRYAG 2 cut(s) 172, 612
Sfr274I CTCGAG 1 cut(s) 649
SlaI CTCGAG 1 cut(s) 649
SmiMI CAYNNNNRTG 2 cut(s) 104, 738
SmlI CTYRAG 3 cut(s) 17, 406, 649
SmoI CTYRAG 3 cut(s) 17, 406, 649
Sse9I AATT 3 cut(s) 237, 1090, 1128
SsiI CCGC 5 cut(s) 32, 35, 67, 684, 724
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 60, 194
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 621
TaqI TCGA 5 cut(s) 25, 235, 395, 650, 715
TasI AATT 3 cut(s) 237, 1090, 1128
TatI WGTACW 1 cut(s) 1070
TauI GCSGC 2 cut(s) 35, 38
TfiI GAWTC 2 cut(s) 232, 433
Tru1I TTAA 2 cut(s) 456, 1094
Tru9I TTAA 2 cut(s) 456, 1094
TscAI CASTG 3 cut(s) 616, 726, 765
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 3 cut(s) 137, 171, 313
Tsp45I GTSAC 1 cut(s) 530
TspDTI ATGAA 4 cut(s) 198, 516, 722, 894
TspRI CASTG 3 cut(s) 616, 726, 765
XceI RCATGY 1 cut(s) 543
XcmI CCANNNNNNNNNTGG 1 cut(s) 866
XhoI CTCGAG 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.