Rorug06G0007600

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000659
Physical Location & Seq
Forward (+)
1123792 .. 1145511
21720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0007600.1

Sequence Viewer

Length: 3078 bp
ATGGGCGGGATTGGTAAGACAACTATGGTAAGAGTGGTGTATGAGAGAATCTCTCGTGAATTTGAATTTAGTTTCCTTCTTACCGATGTTAGAGACTCCGTTGAAAAAAAAGGTCTACTTAATCTACAAAAGCAACTTCTCTCTGGGATTTGGACAAAAAAGGCTGACATATCAGACCTTCATGAAGGAGCCACCATAATAAGGAGGTTGTTAGGTCACAAAAAAGTTCTTCTCATTCTTGATGATGTGACCCATTCAAGCCATTTGAAATATTTGGCAGGAAACCAAAAGTGGTTTGGTTCAGGGAGTAGAGTTCTCATCACAACTAGAAATGAGCATTTATTGATCAAACATGGAGTGGAGAGAAGATTGAAGGTTGAGGAATTTGATGGTGAGGATTCTCTCCAGCTTTTCAGTTGGAAAGCATTCAAAAAAGGTTACCCTGAAGAAGATTTTGTTGATTTGTCTAAATCTGTCATAAATTATGCCAAAGGTCTCCCTTTAGCTCTTGAAGTATTGGGCTCTTTTTTGCATGGAAGAGATCTAAGTGAATGGAACAGTGCATTGAGAAAACTAGGAAGAGTTTATAACCTTGAAATATTTGACATACTTAAAACTAGTTATGATGATCTAGATGATGAAGAGAAGAAAATATTCCTAGACATTTCATGCTTCTTTTGTGGAGAGAACCAAGATCGAGTAACAAAAATACTGATAAGTTGCGATGTATCTGCGATTATTGGAATAAAAGTTCTTATTGAAAGATCTCTCTTGACTGTTTTGCATGGAAGACTATGGATGCACGATTTGCTCCAACAAATGGGTCGAGAAATTGTCCGCCGGGAATCTACTAATGAGCCAGGCAGGCGCAGTAGGTTATGGCAACCTGAAGACATCAAACATGTCCTGACCAACAATACTGGAACAGAAGCTATAGAAGGCATTATTCTGGACTCAACTGAGCTTGGAGTAACGGTGAGGGTGAATGCTAAATCCTTTTTGATGATGAACAGATTGAGATACCTGGTCATTAAGAATGGGAACTTACCAAATGGGCTTGAATGTCTTCCTAATAGTTTGCGGATTCTTAACTGGACCGGGTATCCCTCGAAATCTCTTCCATCACATTTCAACCCTGAGAAGCTACTAGAACTTGAAATGTTCTGTAGTTGCATTGAACATTTTCCTTTGGAAATAGAGCCTTTATACAATTTGAAAACTATTAAACTCAGTGGCTCTTTGAATCTTATCAACACCCCAAACTTTAATGGCATGCCACATCTTGAGGTTCTGTTTCTAGAAGGTTGTACAAGATTATATGAGGTTGACCCAGGAGTTGAAGGGCTTGAAAAACTTACGATGCTGAGTTTAAAAGATTGCAAGAATCTCGTGCATTTTGCAAGCAGTGTACGCGGCTTAAAATCTCTCGAAGTTGTTAATCTTTCTGGTTGCTCAAAGCTCAGAAAACTACCGAATGACATTGGTCATTTAGAAAGTTTGGTCGAGGTTGATGTGAGTGGAACTTCTATACGAGAACTACCTTGCTCAATTGGCATGCTTGAACGACTTGTTTCTATGTCCTTGAGAGATTGTAAACATCTTGTGTGTCTTCCAAGTAGTGTACGAGGCTTAAAATCTCTCAAAGATCTCAATCTTTCTGGTTGCTCAAAGCTTGACAGATTGCCAGATGAGTTGGGCCATATAGCTTGTTTGGAAGAGGTTGATGCGAGTGGGACTTCTATACGAGAGCTACCTTGCTCTATTGGCATGCTTGAATTACTTGTTTCTATGTCCTTGAGAGATTGCAAAAATCTTGTGTGTCTTCCAAGCAGTGTAGGTGGCTTAAAATCTCTCAAAGATCTCAATCTTTCTGGTTGCTCAAAGCTTGATAAATTGTCAGATGAGTTGGGTCTTGTTGCTTGTTTGGAGAAGCTTGATGTGAGTGGAAGTGGCATAAGAGAAGTGCCATCCTCTATTGGTCTTTTGAAAAACCTCAAAAAATTATTTCTTGGAGGATGTAAAGGACAGTCACATAAATCATGGAATATGATGTTCAACCCTTTTCAGTTATTGCGAAAAAGAAGTCACATTCCGGCAAGATTGGTGTTGCCCAGTTTGTCTGGTTTGCATTCATTAACCAAACTGGATCTAAGTGACTGCAATCTTTCTGAAATCCCCAATGATTTGGGCTGCTTATCCTTGTTAAGAGAGTTAGATTTGAGCAAAAATCAATTTGTTAGACTACCTGAGAGCATCAGGCAACTCTTTAGACTTGAATGTCTTCACTTGGATTCGTGCTGCAAGCTTCAGTCTTTGCCAGAGCTTCCAACTTGTTCATGTGTAAACATCAACAACTGCATTTCATTAGACACATTGACCAATCAAATAGAGAAATTGATGAGTGTTAACTGTTTCAAAATGGTGGACAATGAAAGCTGTAAAAGTTCGGCACTTTCATTGCTAATACGCTACCTTAAGTTTCAACATTGGGGTTCTTCAGCACATTCTAAACCTCATTTTAGCTTTACTGCTCCTGGAAATGAAATACCAGAGTGGTACAATCACCAAAGTGTGGGGTCTTCGATAACTGTAGAGCTACATCCAGGTTGGTTTAGTAACAAGTGGAAGGGATTTGCCTGGTGTGTTGTTTTTAGACTCCTCAAACCACTCCCGCCTTTGGCTGAGTTTGGCTTGCGTTGCTTATTGACGGCCAATGGAGAATCCTTAGGTCGCTGTTATATAGGGTTTGGGGGAAAGTGGGGTATACCTGTGTTGGATCACATTTGGTTCTTTTGTGGACACCGTGATAAATATTCCTTTAAACCTGGGTGGCAGGATGTCTACTATCAGCTTCAGCTTGAATTCTCATTTATATCTCATTTCCACATGGAGGGAGGAATGGATGAGGAAATTGGGCAAGTGAAGAAGTGTGGGGTCCGTACGGTATATGAGGAAGATGCAGCATCGAGTTGTACTGAAATTGGTGCAGGTCAGGAAGAGGAAGAAGAACCTCATCCAAAAAGATTTAAAGGACTTGAGCTTGACGAGGCAGGACCTAGTGACCAGAAAAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Adaptin_N COP-gamma_platf Coatomer_g_Cpla

Protein Analysis

1025

Amino Acids

115.21

Weight (kDa)

6.7

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 1 - 145 6.8e-16 NB-ARC domain
WHD_ROQ1 PF23282 213 - 283 3.9e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 473 - 558 3.2e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 486 - 553 1.4e-09 Leucine-rich repeat region
LRR_13 PF23286 544 - 630 8e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 547 - 624 3.2e-08 Leucine-rich repeat region
LRR_13 PF23286 637 - 805 1.1e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 703 - 828 1.9e-09 Leucine-rich repeat region
C-JID PF20160 845 - 986 6.2e-18 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
AasI GACNNNNNNGTC 1 cut(s) 2277
Acc36I ACCTGC 1 cut(s) 2978
AccB7I CCANNNNNTGG 2 cut(s) 820, 2572
AccI GTMKAC 3 cut(s) 115, 2764, 2841
AccII CGCG 1 cut(s) 1413
AciI CCGC 5 cut(s) 6, 838, 1081, 1413, 2672
AclWI GGATC 2 cut(s) 2154, 2784
AcoI YGGCCR 1 cut(s) 2709
AcsI RAATTY 4 cut(s) 59, 65, 383, 2861
AcuI CTGAAG 5 cut(s) 465, 909, 2291, 2481, 2837
AfaI GTAC 6 cut(s) 1309, 1410, 1623, 2558, 2941, 2974
AfiI CCNNNNNNNGG 5 cut(s) 201, 820, 2572, 2677, 2890
AflII CTTAAG 1 cut(s) 2474
AflIII ACRYGT 1 cut(s) 901
AhlI ACTAGT 1 cut(s) 617
AjnI CCWGG 7 cut(s) 859, 1023, 1330, 2533, 2602, 2636, 2824
AleI CACNNNNGTG 1 cut(s) 2568
AloI GAACNNNNNNTCC 2 cut(s) 735, 767
Alw26I GTCTC 2 cut(s) 87, 500
AlwI GGATC 2 cut(s) 2154, 2784
AoxI GGCC 2 cut(s) 1696, 2709
ApeKI GCWGC 3 cut(s) 2190, 2298, 2960
ApoI RAATTY 4 cut(s) 59, 65, 383, 2861
ArsI GACNNNNNNTTYG 2 cut(s) 2068, 2100
Asp700I GAANNNNTTC 5 cut(s) 425, 653, 1065, 1182, 2280
AspLEI GCGC 1 cut(s) 870
AspS9I GGNCC 4 cut(s) 1095, 1696, 2935, 3053
AsuC2I CCSGG 2 cut(s) 842, 1099
AsuHPI GGTGA 4 cut(s) 404, 988, 994, 2555
AvaII GGWCC 3 cut(s) 1095, 2935, 3053
AxyI CCTNAGG 1 cut(s) 2725
BanII GRGCYC 1 cut(s) 524
BauI CACGAG 2 cut(s) 54, 1388
BbsI GAAGAC 7 cut(s) 796, 897, 1058, 1601, 1814, 2273, 2571
BbvI GCAGC 3 cut(s) 2177, 2285, 2972
BccI CCATC 3 cut(s) 383, 1129, 1975
BceAI ACGGC 1 cut(s) 2724
BcgI CGANNNNNNTGC 4 cut(s) 713, 747, 1369, 1403
BciT130I CCWGG 7 cut(s) 861, 1025, 1332, 2535, 2604, 2638, 2826
BciVI GTATCC 1 cut(s) 1113
BclI TGATCA 1 cut(s) 345
BcnI CCSGG 2 cut(s) 842, 1099
BcoDI GTCTC 2 cut(s) 87, 500
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 8 cut(s) 327, 575, 618, 632, 659, 1148, 1298, 3057
BfmI CTRYAG 3 cut(s) 933, 1165, 2589
BfrI CTTAAG 1 cut(s) 2474
BfuAI ACCTGC 1 cut(s) 2978
BfuI GTATCC 1 cut(s) 1113
BglI GCCNNNNNGGC 1 cut(s) 865
BglII AGATCT 4 cut(s) 541, 764, 1645, 1858
BisI GCNGC 4 cut(s) 1414, 2191, 2299, 2961
BlsI GCNGC 4 cut(s) 1415, 2192, 2300, 2962
Bme1390I CCNGG 9 cut(s) 842, 861, 1025, 1099, 1332, 2535, 2604, 2638, 2826
Bme18I GGWCC 3 cut(s) 1095, 2935, 3053
BmgT120I GGNCC 4 cut(s) 1095, 1696, 2935, 3053
BmiI GGNNCC 2 cut(s) 190, 2936
BmrFI CCNGG 9 cut(s) 842, 861, 1025, 1099, 1332, 2535, 2604, 2638, 2826
BmrI ACTGGG 1 cut(s) 2106
BmsI GCATC 6 cut(s) 789, 1350, 1714, 2262, 2947, 2972
BmuI ACTGGG 1 cut(s) 2106
BoxI GACNNNNGTC 1 cut(s) 1482
BpiI GAAGAC 7 cut(s) 796, 897, 1058, 1601, 1814, 2273, 2571
BplI GAGNNNNNCTC 4 cut(s) 35, 67, 37, 69
BpmI CTGGAG 1 cut(s) 389
BpuEI CTTGAG 4 cut(s) 1304, 1603, 1816, 3056
BpuMI CCSGG 2 cut(s) 842, 1099
BsaBI GATNNNNATC 2 cut(s) 1650, 1863
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 1330, 2825
BsaXI ACNNNNNCTCC 2 cut(s) 960, 990
Bsc4I CCNNNNNNNGG 5 cut(s) 201, 820, 2572, 2677, 2890
Bse1I ACTGG 4 cut(s) 925, 1097, 2112, 2148
Bse21I CCTNAGG 1 cut(s) 2725
Bse3DI GCAATG 1 cut(s) 2456
Bse8I GATNNNNATC 2 cut(s) 1650, 1863
BseBI CCWGG 7 cut(s) 861, 1025, 1332, 2535, 2604, 2638, 2826
BseDI CCNNGG 2 cut(s) 1330, 2825
BseGI GGATG 7 cut(s) 804, 1967, 2021, 2599, 2842, 2908, 3013
BseJI GATNNNNATC 2 cut(s) 1650, 1863
BseLI CCNNNNNNNGG 5 cut(s) 201, 820, 2572, 2677, 2890
BseMI GCAATG 1 cut(s) 2456
BseMII CTCAG 7 cut(s) 951, 1128, 1243, 1355, 1474, 2238, 2673
BseNI ACTGG 4 cut(s) 925, 1097, 2112, 2148
BseRI GAGGAG 1 cut(s) 2648
BseXI GCAGC 3 cut(s) 2177, 2285, 2972
BsgI GTGCAG 1 cut(s) 3006
Bsh1236I CGCG 1 cut(s) 1413
BshFI GGCC 2 cut(s) 1698, 2711
BsiSI CCGG 3 cut(s) 841, 1098, 2093
BsiWI CGTACG 1 cut(s) 2939
BslFI GGGAC 1 cut(s) 1747
BslI CCNNNNNNNGG 5 cut(s) 201, 820, 2572, 2677, 2890
BsmAI GTCTC 2 cut(s) 87, 500
BsmFI GGGAC 1 cut(s) 1747
BsmI GAATGC 3 cut(s) 425, 991, 2128
BsnI GGCC 2 cut(s) 1698, 2711
Bso31I GGTCTC 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 524
Bsp1407I TGTACA 1 cut(s) 1307
Bsp143I GATC 9 cut(s) 345, 541, 628, 694, 764, 1645, 1858, 2146, 2776
BspACI CCGC 5 cut(s) 6, 838, 1081, 1413, 2672
BspANI GGCC 2 cut(s) 1698, 2711
BspCNI CTCAG 7 cut(s) 952, 1129, 1242, 1356, 1473, 2239, 2674
BspFNI CGCG 1 cut(s) 1413
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 190, 2936
BspMI ACCTGC 1 cut(s) 2978
BspPI GGATC 2 cut(s) 2154, 2784
BspTI CTTAAG 1 cut(s) 2474
BspTNI GGTCTC 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 2456
BsrGI TGTACA 1 cut(s) 1307
BsrI ACTGG 4 cut(s) 925, 1097, 2112, 2148
BssECI CCNNGG 2 cut(s) 1330, 2825
BssMI GATC 9 cut(s) 345, 541, 628, 694, 764, 1645, 1858, 2146, 2776
BssNAI GTATAC 1 cut(s) 2765
BssSI CACGAG 2 cut(s) 54, 1388
Bst1107I GTATAC 1 cut(s) 2765
Bst2BI CACGAG 2 cut(s) 54, 1388
Bst2UI CCWGG 7 cut(s) 861, 1025, 1332, 2535, 2604, 2638, 2826
Bst4CI ACNGT 8 cut(s) 560, 778, 976, 2028, 2411, 2590, 2804, 2944
Bst6I CTCTTC 6 cut(s) 532, 574, 636, 1122, 1710, 2991
BstAFI CTTAAG 1 cut(s) 2474
BstAPI GCANNNNNTGC 1 cut(s) 808
BstAUI TGTACA 1 cut(s) 1307
BstC8I GCNNGC 7 cut(s) 866, 1274, 1402, 1556, 1769, 2303, 2693
BstEII GGTNACC 1 cut(s) 437
BstF5I GGATG 7 cut(s) 804, 1967, 2021, 2599, 2842, 2908, 3013
BstFNI CGCG 1 cut(s) 1413
BstHHI GCGC 1 cut(s) 870
BstKTI GATC 9 cut(s) 348, 544, 631, 697, 767, 1648, 1861, 2149, 2779
BstMAI GTCTC 2 cut(s) 87, 500
BstMBI GATC 9 cut(s) 345, 541, 628, 694, 764, 1645, 1858, 2146, 2776
BstMWI GCNNNNNNNGC 6 cut(s) 808, 865, 1410, 1551, 1764, 2697
BstNI CCWGG 7 cut(s) 861, 1025, 1332, 2535, 2604, 2638, 2826
BstNSI RCATGY 4 cut(s) 905, 1276, 1558, 1771
BstPAI GACNNNNGTC 1 cut(s) 1482
BstPI GGTNACC 1 cut(s) 437
BstSCI CCNGG 9 cut(s) 840, 859, 1023, 1097, 1330, 2533, 2602, 2636, 2824
BstSFI CTRYAG 3 cut(s) 933, 1165, 2589
BstUI CGCG 1 cut(s) 1413
BstV1I GCAGC 3 cut(s) 2177, 2285, 2972
BstV2I GAAGAC 7 cut(s) 796, 897, 1058, 1601, 1814, 2273, 2571
BstX2I RGATCY 5 cut(s) 541, 764, 1645, 1858, 2146
BstXI CCANNNNNNTGG 2 cut(s) 2185, 3071
BstYI RGATCY 5 cut(s) 541, 764, 1645, 1858, 2146
BstZ17I GTATAC 1 cut(s) 2765
Bsu36I CCTNAGG 1 cut(s) 2725
BsuI GTATCC 1 cut(s) 1113
BsuRI GGCC 2 cut(s) 1698, 2711
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 7 cut(s) 804, 1967, 2021, 2599, 2842, 2908, 3013
BtsI GCAGTG 2 cut(s) 1411, 1837
BtsIMutI CAGTG 4 cut(s) 565, 1237, 1411, 1837
BveI ACCTGC 1 cut(s) 2978
Cac8I GCNNGC 7 cut(s) 866, 1274, 1402, 1556, 1769, 2303, 2693
CciI TCATGA 1 cut(s) 181
CfoI GCGC 1 cut(s) 870
Cfr13I GGNCC 4 cut(s) 1095, 1696, 2935, 3053
CsiI ACCWGGT 1 cut(s) 1023
Csp6I GTAC 6 cut(s) 1308, 1409, 1622, 2557, 2940, 2973
CviQI GTAC 6 cut(s) 1308, 1409, 1622, 2557, 2940, 2973
DpnI GATC 9 cut(s) 347, 543, 630, 696, 766, 1647, 1860, 2148, 2778
DpnII GATC 9 cut(s) 345, 541, 628, 694, 764, 1645, 1858, 2146, 2776
DraI TTTAAA 3 cut(s) 1371, 2821, 3028
DrdI GACNNNNNNGTC 1 cut(s) 2277
DseDI GACNNNNNNGTC 1 cut(s) 2277
EaeI YGGCCR 1 cut(s) 2709
Eam1104I CTCTTC 6 cut(s) 532, 574, 636, 1122, 1710, 2991
EarI CTCTTC 6 cut(s) 532, 574, 636, 1122, 1710, 2991
EciI GGCGGA 1 cut(s) 827
Eco24I GRGCYC 1 cut(s) 524
Eco31I GGTCTC 1 cut(s) 500
Eco47I GGWCC 3 cut(s) 1095, 2935, 3053
Eco57I CTGAAG 5 cut(s) 465, 909, 2291, 2481, 2837
Eco81I CCTNAGG 1 cut(s) 2725
Eco91I GGTNACC 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 3053
EcoO65I GGTNACC 1 cut(s) 437
EcoRI GAATTC 1 cut(s) 2861
EcoRII CCWGG 7 cut(s) 859, 1023, 1330, 2533, 2602, 2636, 2824
EcoT38I GRGCYC 1 cut(s) 524
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FaqI GGGAC 1 cut(s) 1747
FauI CCCGC 1 cut(s) 2679
FbaI TGATCA 1 cut(s) 345
FblI GTMKAC 3 cut(s) 115, 2764, 2841
Fnu4HI GCNGC 4 cut(s) 1414, 2191, 2299, 2961
FokI GGATG 7 cut(s) 811, 1954, 2028, 2586, 2849, 2915, 3000
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 4 cut(s) 1414, 2191, 2299, 2961
FspBI CTAG 8 cut(s) 327, 575, 618, 632, 659, 1148, 1298, 3057
GlaI GCGC 1 cut(s) 869
GluI GCNGC 4 cut(s) 1414, 2191, 2299, 2961
GsuI CTGGAG 1 cut(s) 389
HaeIII GGCC 2 cut(s) 1698, 2711
HapII CCGG 3 cut(s) 841, 1098, 2093
HhaI GCGC 1 cut(s) 870
Hin6I GCGC 1 cut(s) 868
HinP1I GCGC 1 cut(s) 868
HincII GTYRAC 2 cut(s) 1327, 2407
HindII GTYRAC 2 cut(s) 1327, 2407
HindIII AAGCTT 4 cut(s) 1670, 1883, 1931, 2303
HpaI GTTAAC 1 cut(s) 2407
HpaII CCGG 3 cut(s) 841, 1098, 2093
HphI GGTGA 4 cut(s) 404, 988, 994, 2555
Hpy188I TCNGA 4 cut(s) 175, 1463, 1900, 2170
HpyAV CCTTC 8 cut(s) 86, 179, 188, 367, 932, 1295, 1334, 2620
HpyCH4III ACNGT 8 cut(s) 560, 778, 976, 2028, 2411, 2590, 2804, 2944
HpyF10VI GCNNNNNNNGC 6 cut(s) 808, 865, 1410, 1551, 1764, 2697
HspAI GCGC 1 cut(s) 868
Ksp22I TGATCA 1 cut(s) 345
KspAI GTTAAC 1 cut(s) 2407
Kzo9I GATC 9 cut(s) 345, 541, 628, 694, 764, 1645, 1858, 2146, 2776
LmnI GCTCC 3 cut(s) 188, 816, 2536
Lsp1109I GCAGC 3 cut(s) 2177, 2285, 2972
LweI GCATC 6 cut(s) 789, 1350, 1714, 2262, 2947, 2972
MabI ACCWGGT 1 cut(s) 1023
MaeI CTAG 8 cut(s) 327, 575, 618, 632, 659, 1148, 1298, 3057
MalI GATC 9 cut(s) 347, 543, 630, 696, 766, 1647, 1860, 2148, 2778
MboI GATC 9 cut(s) 345, 541, 628, 694, 764, 1645, 1858, 2146, 2776
MfeI CAATTG 1 cut(s) 1548
MflI RGATCY 5 cut(s) 541, 764, 1645, 1858, 2146
MhlI GDGCHC 1 cut(s) 524
MlyI GAGTC 3 cut(s) 89, 947, 2649
MmeI TCCRAC 4 cut(s) 398, 838, 2351, 2754
MroXI GAANNNNTTC 5 cut(s) 425, 653, 1065, 1182, 2280
MslI CAYNNNNRTG 1 cut(s) 2568
MspCI CTTAAG 1 cut(s) 2474
MspI CCGG 3 cut(s) 841, 1098, 2093
MspR9I CCNGG 9 cut(s) 842, 861, 1025, 1099, 1332, 2535, 2604, 2638, 2826
MunI CAATTG 1 cut(s) 1548
Mva1269I GAATGC 3 cut(s) 425, 991, 2128
MvaI CCWGG 7 cut(s) 861, 1025, 1332, 2535, 2604, 2638, 2826
MvnI CGCG 1 cut(s) 1413
MwoI GCNNNNNNNGC 6 cut(s) 808, 865, 1410, 1551, 1764, 2697
NciI CCSGG 2 cut(s) 842, 1099
NdeII GATC 9 cut(s) 345, 541, 628, 694, 764, 1645, 1858, 2146, 2776
NlaIV GGNNCC 2 cut(s) 190, 2936
NmuCI GTSAC 6 cut(s) 215, 247, 2028, 2084, 2153, 3059
NspI RCATGY 4 cut(s) 905, 1276, 1558, 1771
OliI CACNNNNGTG 1 cut(s) 2568
PaeI GCATGC 3 cut(s) 1276, 1558, 1771
PagI TCATGA 1 cut(s) 181
PciI ACATGT 1 cut(s) 901
PctI GAATGC 3 cut(s) 425, 991, 2128
PdmI GAANNNNTTC 5 cut(s) 425, 653, 1065, 1182, 2280
PfeI GAWTC 8 cut(s) 48, 398, 845, 1084, 1243, 1384, 2291, 2720
Pfl23II CGTACG 1 cut(s) 2939
PflMI CCANNNNNTGG 2 cut(s) 820, 2572
PfoI TCCNGGA 1 cut(s) 2533
PkrI GCNGC 4 cut(s) 1415, 2192, 2300, 2962
PleI GAGTC 3 cut(s) 89, 947, 2649
PpsI GAGTC 3 cut(s) 89, 947, 2649
PpuMI RGGWCCY 1 cut(s) 3053
PscI ACATGT 1 cut(s) 901
PshAI GACNNNNGTC 1 cut(s) 1482
PsiI TTATAA 1 cut(s) 588
Psp5II RGGWCCY 1 cut(s) 3053
Psp6I CCWGG 7 cut(s) 859, 1023, 1330, 2533, 2602, 2636, 2824
PspEI GGTNACC 1 cut(s) 437
PspGI CCWGG 7 cut(s) 859, 1023, 1330, 2533, 2602, 2636, 2824
PspLI CGTACG 1 cut(s) 2939
PspN4I GGNNCC 2 cut(s) 190, 2936
PspPI GGNCC 4 cut(s) 1095, 1696, 2935, 3053
PspPPI RGGWCCY 1 cut(s) 3053
PsuI RGATCY 5 cut(s) 541, 764, 1645, 1858, 2146
RsaI GTAC 6 cut(s) 1309, 1410, 1623, 2558, 2941, 2974
RsaNI GTAC 6 cut(s) 1308, 1409, 1622, 2557, 2940, 2973
RseI CAYNNNNRTG 1 cut(s) 2568
SatI GCNGC 4 cut(s) 1414, 2191, 2299, 2961
Sau3AI GATC 9 cut(s) 345, 541, 628, 694, 764, 1645, 1858, 2146, 2776
Sau96I GGNCC 4 cut(s) 1095, 1696, 2935, 3053
SchI GAGTC 3 cut(s) 89, 947, 2649
ScrFI CCNGG 9 cut(s) 842, 861, 1025, 1099, 1332, 2535, 2604, 2638, 2826
SduI GDGCHC 1 cut(s) 524
SexAI ACCWGGT 1 cut(s) 1023
SfaNI GCATC 6 cut(s) 789, 1350, 1714, 2262, 2947, 2972
SfcI CTRYAG 3 cut(s) 933, 1165, 2589
SinI GGWCC 3 cut(s) 1095, 2935, 3053
SmiMI CAYNNNNRTG 1 cut(s) 2568
SmlI CTYRAG 5 cut(s) 1283, 1582, 1795, 2474, 3035
SmoI CTYRAG 5 cut(s) 1283, 1582, 1795, 2474, 3035
SpeI ACTAGT 1 cut(s) 617
SphI GCATGC 3 cut(s) 1276, 1558, 1771
SsiI CCGC 5 cut(s) 6, 838, 1081, 1413, 2672
SspI AATATT 4 cut(s) 272, 600, 654, 2813
SspMI CTAG 8 cut(s) 327, 575, 618, 632, 659, 1148, 1298, 3057
StyD4I CCNGG 9 cut(s) 840, 859, 1023, 1097, 1330, 2533, 2602, 2636, 2824
TaaI ACNGT 8 cut(s) 560, 778, 976, 2028, 2411, 2590, 2804, 2944
TaqI TCGA 7 cut(s) 697, 826, 1109, 1428, 1503, 2582, 2966
TatI WGTACW 2 cut(s) 1307, 2972
TauI GCSGC 1 cut(s) 1416
TfiI GAWTC 8 cut(s) 48, 398, 845, 1084, 1243, 1384, 2291, 2720
TscAI CASTG 4 cut(s) 565, 1237, 1411, 1837
TseFI GTSAC 6 cut(s) 215, 247, 2028, 2084, 2153, 3059
TseI GCWGC 3 cut(s) 2190, 2298, 2960
Tsp45I GTSAC 6 cut(s) 215, 247, 2028, 2084, 2153, 3059
TspGWI ACGGA 2 cut(s) 88, 2927
TspRI CASTG 4 cut(s) 565, 1237, 1411, 1837
Van91I CCANNNNNTGG 2 cut(s) 820, 2572
Vha464I CTTAAG 1 cut(s) 2474
VpaK11BI GGWCC 3 cut(s) 1095, 2935, 3053
XapI RAATTY 4 cut(s) 59, 65, 383, 2861
XbaI TCTAGA 2 cut(s) 631, 1297
XceI RCATGY 4 cut(s) 905, 1276, 1558, 1771
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmiI GTMKAC 3 cut(s) 115, 2764, 2841
XmnI GAANNNNTTC 5 cut(s) 425, 653, 1065, 1182, 2280
XspI CTAG 8 cut(s) 327, 575, 618, 632, 659, 1148, 1298, 3057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.