Rh6BG124500

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000659
Physical Location & Seq
Forward (+)
19436217 .. 19440808
4592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG124500.1

Sequence Viewer

Length: 1293 bp
ATGGCGAAAAGCAACAACTTCAGCTGGGCATTCTTACTTCTCTTCTCATGTTTAGTTGCGTTCTTTTTCATTCCAGCCAAAGCTGCAATGAAGACCTACCAGTTCGATATTCAAGTAAAGAATGTGAGCAGGTTGTGCCATCCTAAACCAATTGTTACAGTTAATGGGATGTTCCCTGGACCTACAATCTATGCTAGAGAAGGCGATACAATTCTAGTTAATGTTACCAACCATGCACAGTATAACATGTCAATTCATTGGCATGGTCTAAGGCAATATAGAAATGGGTGGGCAGATGGACCTGCTTATATAACACAATGTCCGATCAAGACAGGAAACTTTTACACCTACAATATGAAAATCACAGGGCAAAGAGGAACCCTATGGTGGCATGCTCACATATTTTGGCTGAGAGCCACTGTCTATGGAGCAATTGTCATCCTGCCCAGACACGGCACTGGCTTTCCTTTTCCTCAACCTTGCAGTGAAACTAATCTCGTGTTAGGAGAATGGTGGAATAACGATGTTGAAGAGATTGTTAAACAAGGGAACAGACTAGGGTTGCCTCCAAATATGTCAGATGCACATACCATTAATGGGAAGCCAGGGCCGCTCTTTCCATGTTCTGAGAAACATACCTTTGCAATGGAGGTTGAACAGGGAAAGACTTACCTGCTACGGATCGTCAATGCTGCACTCAATGACGAGCTATTCTTTGCAATTGTTGGCCACAACTTGACAGTGGTAGAGGTTGATGCAGTCTATACATCTCAGGCAATACTAATTGCACCAGGCCAGACCACAAATGTTCTTGTTCGGGCAAACCAAGTCCTTAGCAGATACTTCATGGCTGCAAGGTCATTCATGGATGCACCTCTTTCCATAGGCAACAAAACTGCCACTGCAATCCTACAATATAAAGGCATCCCTAATTTTGTGGTGCCAGTCCTTTCCCAACTTCCAGCACTCAATGACACAGCTTTTGTACTGAGCTACAATGCCAAGCTGAGAAGCCTAAACACAGAAAAGTACCCAACAAATGTACCTCTTAAAGTGGATAGACATCTTTTGTTCACAATTGGTTTTGGAATCAACCTATGCACTACTTGCCTGAATGGAACACAGCTCACTGCTTCCTTGAACAACATCACATTCGTGATGCCTCAAATCGGGTTGCCTCAAGCTCATTACTTCAACACCAAGGGGGTATTTTCCACAGATTTCCCAGACCGTCCGCCAACAACTTTCAATTATACTGGTGCCCACTCACTGCCAACCTTGGGACTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

430

Amino Acids

47.97

Weight (kDa)

9.13

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 37 - 150 5.7e-42 Multicopper oxidase
Cu-oxidase PF00394 164 - 308 1.7e-37 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 120, 310, 681
AccB1I GGYRCC 2 cut(s) 940, 1259
AccBSI CCGCTC 1 cut(s) 613
AciI CCGC 2 cut(s) 611, 1235
AclWI GGATC 1 cut(s) 689
AcoI YGGCCR 1 cut(s) 727
AcuI CTGAAG 1 cut(s) 4
AfaI GTAC 3 cut(s) 987, 1031, 1044
AfiI CCNNNNNNNGG 5 cut(s) 387, 452, 597, 1169, 1280
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 6 cut(s) 113, 530, 656, 1141, 1195, 1249
AjnI CCWGG 3 cut(s) 175, 604, 790
AleI CACNNNNGTG 1 cut(s) 1154
AluBI AGCT 8 cut(s) 24, 83, 709, 980, 993, 1006, 1126, 1184
AluI AGCT 8 cut(s) 24, 83, 709, 980, 993, 1006, 1126, 1184
AlwI GGATC 1 cut(s) 689
AoxI GGCC 3 cut(s) 608, 727, 793
ApeKI GCWGC 3 cut(s) 83, 692, 851
ArsI GACNNNNNNTTYG 2 cut(s) 965, 997
AseI ATTAAT 1 cut(s) 594
AspS9I GGNCC 3 cut(s) 179, 299, 608
AvaII GGWCC 2 cut(s) 179, 299
BaeGI GKGCMC 1 cut(s) 1264
BaeI ACNNNNGTAYC 2 cut(s) 1026, 1059
BalI TGGCCA 1 cut(s) 729
BanI GGYRCC 2 cut(s) 940, 1259
BauI CACGAG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 98
BbvI GCAGC 3 cut(s) 70, 679, 838
BccI CCATC 2 cut(s) 147, 290
BceAI ACGGC 1 cut(s) 469
BciT130I CCWGG 3 cut(s) 177, 606, 792
BfaI CTAG 4 cut(s) 195, 215, 557, 1291
BfuAI ACCTGC 3 cut(s) 120, 310, 681
BisI GCNGC 4 cut(s) 84, 611, 693, 852
BlsI GCNGC 4 cut(s) 85, 612, 694, 853
Bme1390I CCNGG 3 cut(s) 177, 606, 792
Bme18I GGWCC 2 cut(s) 179, 299
BmgT120I GGNCC 3 cut(s) 179, 299, 608
BmiI GGNNCC 3 cut(s) 379, 942, 1261
BmrFI CCNGG 3 cut(s) 177, 606, 792
BmsI GCATC 5 cut(s) 571, 745, 859, 933, 1149
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 833
BpuEI CTTGAG 1 cut(s) 1164
BsaBI GATNNNNATC 1 cut(s) 1062
BsaJI CCNNGG 4 cut(s) 175, 605, 1200, 1278
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 5 cut(s) 387, 452, 597, 1169, 1280
Bse1I ACTGG 4 cut(s) 100, 463, 944, 1261
Bse3DI GCAATG 2 cut(s) 93, 651
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 3 cut(s) 177, 606, 792
BseDI CCNNGG 4 cut(s) 175, 605, 1200, 1278
BseGI GGATG 5 cut(s) 139, 174, 438, 874, 924
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 5 cut(s) 387, 452, 597, 1169, 1280
BseMI GCAATG 2 cut(s) 93, 651
BseMII CTCAG 5 cut(s) 401, 618, 785, 980, 998
BseNI ACTGG 4 cut(s) 100, 463, 944, 1261
BseSI GKGCMC 1 cut(s) 1264
BseXI GCAGC 3 cut(s) 70, 679, 838
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 678
BshFI GGCC 3 cut(s) 610, 729, 795
BshNI GGYRCC 2 cut(s) 940, 1259
BslI CCNNNNNNNGG 5 cut(s) 387, 452, 597, 1169, 1280
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 3 cut(s) 610, 729, 795
Bsp1286I GDGCHC 1 cut(s) 1264
Bsp143I GATC 2 cut(s) 324, 681
BspACI CCGC 2 cut(s) 611, 1235
BspANI GGCC 3 cut(s) 610, 729, 795
BspCNI CTCAG 5 cut(s) 402, 619, 784, 981, 999
BspLI GGNNCC 3 cut(s) 379, 942, 1261
BspMI ACCTGC 3 cut(s) 120, 310, 681
BspPI GGATC 1 cut(s) 689
BspT107I GGYRCC 2 cut(s) 940, 1259
BsrBI CCGCTC 1 cut(s) 613
BsrDI GCAATG 2 cut(s) 93, 651
BsrI ACTGG 4 cut(s) 100, 463, 944, 1261
BssECI CCNNGG 4 cut(s) 175, 605, 1200, 1278
BssMI GATC 2 cut(s) 324, 681
BssSI CACGAG 1 cut(s) 497
BssT1I CCWWGG 2 cut(s) 1200, 1278
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 3 cut(s) 177, 606, 792
Bst4CI ACNGT 5 cut(s) 160, 240, 421, 742, 1232
Bst6I CTCTTC 2 cut(s) 47, 525
BstAPI GCANNNNNTGC 2 cut(s) 135, 1107
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 7 cut(s) 269, 410, 627, 771, 833, 989, 1007
BstF5I GGATG 5 cut(s) 139, 174, 438, 874, 924
BstKTI GATC 2 cut(s) 327, 684
BstMBI GATC 2 cut(s) 324, 681
BstMWI GCNNNNNNNGC 4 cut(s) 83, 135, 610, 1107
BstNI CCWGG 3 cut(s) 177, 606, 792
BstNSI RCATGY 2 cut(s) 250, 395
BstSCI CCNGG 3 cut(s) 175, 604, 790
BstSLI GKGCMC 1 cut(s) 1264
BstV1I GCAGC 3 cut(s) 70, 679, 838
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 3 cut(s) 610, 729, 795
BtsCI GGATG 5 cut(s) 139, 174, 438, 874, 924
BtsI GCAGTG 4 cut(s) 490, 900, 1128, 1268
BtsIMutI CAGTG 7 cut(s) 417, 456, 490, 747, 900, 1128, 1268
BveI ACCTGC 3 cut(s) 120, 310, 681
Cac8I GCNNGC 1 cut(s) 393
Cfr13I GGNCC 3 cut(s) 179, 299, 608
Csp6I GTAC 3 cut(s) 986, 1030, 1043
CviAII CATG 8 cut(s) 48, 233, 247, 263, 392, 621, 847, 865
CviQI GTAC 3 cut(s) 986, 1030, 1043
DdeI CTNAG 7 cut(s) 269, 410, 627, 771, 833, 989, 1007
DpnI GATC 2 cut(s) 326, 683
DpnII GATC 2 cut(s) 324, 681
EaeI YGGCCR 1 cut(s) 727
Eam1104I CTCTTC 2 cut(s) 47, 525
EarI CTCTTC 2 cut(s) 47, 525
EciI GGCGGA 1 cut(s) 1224
Eco130I CCWWGG 2 cut(s) 1200, 1278
Eco47I GGWCC 2 cut(s) 179, 299
Eco57I CTGAAG 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 175, 604, 790
EcoT14I CCWWGG 2 cut(s) 1200, 1278
ErhI CCWWGG 2 cut(s) 1200, 1278
FaeI CATG 8 cut(s) 51, 236, 250, 266, 395, 624, 850, 868
FatI CATG 8 cut(s) 47, 232, 246, 262, 391, 620, 846, 864
Fnu4HI GCNGC 4 cut(s) 84, 611, 693, 852
FokI GGATG 5 cut(s) 126, 181, 425, 881, 911
Fsp4HI GCNGC 4 cut(s) 84, 611, 693, 852
FspBI CTAG 4 cut(s) 195, 215, 557, 1291
GluI GCNGC 4 cut(s) 84, 611, 693, 852
GsaI CCCAGC 1 cut(s) 28
HaeIII GGCC 3 cut(s) 610, 729, 795
Hin1II CATG 8 cut(s) 51, 236, 250, 266, 395, 624, 850, 868
HinfI GANTC 1 cut(s) 1089
Hpy166II GTNNAC 1 cut(s) 1074
Hpy188I TCNGA 3 cut(s) 324, 580, 628
Hpy188III TCNNGA 2 cut(s) 328, 1156
Hpy8I GTNNAC 1 cut(s) 1074
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 5 cut(s) 160, 240, 421, 742, 1232
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 135, 610, 1107
HpyF3I CTNAG 7 cut(s) 269, 410, 627, 771, 833, 989, 1007
Hsp92II CATG 8 cut(s) 51, 236, 250, 266, 395, 624, 850, 868
Kzo9I GATC 2 cut(s) 324, 681
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 3 cut(s) 70, 679, 838
LweI GCATC 5 cut(s) 571, 745, 859, 933, 1149
MaeI CTAG 4 cut(s) 195, 215, 557, 1291
MaeIII GTNAC 2 cut(s) 154, 223
MalI GATC 2 cut(s) 326, 683
MbiI CCGCTC 1 cut(s) 613
MboI GATC 2 cut(s) 324, 681
MboII GAAGA 3 cut(s) 34, 103, 542
MfeI CAATTG 4 cut(s) 150, 432, 720, 1077
MhlI GDGCHC 1 cut(s) 1264
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 9 cut(s) 150, 210, 252, 432, 720, 783, 931, 1077, 1249
MluNI TGGCCA 1 cut(s) 729
MnlI CCTC 9 cut(s) 368, 483, 576, 643, 742, 885, 1056, 1173, 1188
Mox20I TGGCCA 1 cut(s) 729
MscI TGGCCA 1 cut(s) 729
MseI TTAA 5 cut(s) 162, 219, 540, 594, 1050
MslI CAYNNNNRTG 2 cut(s) 261, 1154
Msp20I TGGCCA 1 cut(s) 729
MspA1I CMGCKG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 177, 606, 792
MunI CAATTG 4 cut(s) 150, 432, 720, 1077
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 3 cut(s) 177, 606, 792
MwoI GCNNNNNNNGC 4 cut(s) 83, 135, 610, 1107
NdeII GATC 2 cut(s) 324, 681
NlaIII CATG 8 cut(s) 51, 236, 250, 266, 395, 624, 850, 868
NlaIV GGNNCC 3 cut(s) 379, 942, 1261
NspI RCATGY 2 cut(s) 250, 395
OliI CACNNNNGTG 1 cut(s) 1154
PaeI GCATGC 1 cut(s) 395
PciI ACATGT 1 cut(s) 246
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 1089
PkrI GCNGC 4 cut(s) 85, 612, 694, 853
PscI ACATGT 1 cut(s) 246
PshBI ATTAAT 1 cut(s) 594
Psp6I CCWGG 3 cut(s) 175, 604, 790
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 3 cut(s) 175, 604, 790
PspN4I GGNNCC 3 cut(s) 379, 942, 1261
PspPI GGNCC 3 cut(s) 179, 299, 608
PvuII CAGCTG 1 cut(s) 24
RsaI GTAC 3 cut(s) 987, 1031, 1044
RsaNI GTAC 3 cut(s) 986, 1030, 1043
RseI CAYNNNNRTG 2 cut(s) 261, 1154
SaqAI TTAA 5 cut(s) 162, 219, 540, 594, 1050
SatI GCNGC 4 cut(s) 84, 611, 693, 852
Sau3AI GATC 2 cut(s) 324, 681
Sau96I GGNCC 3 cut(s) 179, 299, 608
ScrFI CCNGG 3 cut(s) 177, 606, 792
SduI GDGCHC 1 cut(s) 1264
SfaNI GCATC 5 cut(s) 571, 745, 859, 933, 1149
SinI GGWCC 2 cut(s) 179, 299
SmiMI CAYNNNNRTG 2 cut(s) 261, 1154
SmlI CTYRAG 1 cut(s) 1179
SmoI CTYRAG 1 cut(s) 1179
SphI GCATGC 1 cut(s) 395
Sse9I AATT 9 cut(s) 150, 210, 252, 432, 720, 783, 931, 1077, 1249
SsiI CCGC 2 cut(s) 611, 1235
SspMI CTAG 4 cut(s) 195, 215, 557, 1291
StyD4I CCNGG 3 cut(s) 175, 604, 790
StyI CCWWGG 2 cut(s) 1200, 1278
TaaI ACNGT 5 cut(s) 160, 240, 421, 742, 1232
TaqI TCGA 1 cut(s) 105
TasI AATT 9 cut(s) 150, 210, 252, 432, 720, 783, 931, 1077, 1249
TatI WGTACW 1 cut(s) 985
TauI GCSGC 1 cut(s) 613
TfiI GAWTC 1 cut(s) 1089
Tru1I TTAA 5 cut(s) 162, 219, 540, 594, 1050
Tru9I TTAA 5 cut(s) 162, 219, 540, 594, 1050
TscAI CASTG 7 cut(s) 424, 463, 490, 747, 907, 1135, 1275
TseI GCWGC 3 cut(s) 83, 692, 851
TspDTI ATGAA 6 cut(s) 58, 104, 245, 371, 835, 853
TspGWI ACGGA 1 cut(s) 694
TspRI CASTG 7 cut(s) 424, 463, 490, 747, 907, 1135, 1275
VpaK11BI GGWCC 2 cut(s) 179, 299
VspI ATTAAT 1 cut(s) 594
XceI RCATGY 2 cut(s) 250, 395
XspI CTAG 4 cut(s) 195, 215, 557, 1291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.