Rmu_sc0010483.1_g000004

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010483.1
OG0000659
Physical Location & Seq
Reverse (-)
9040 .. 10978
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010483.1_g000004.1.cds

Sequence Viewer

Length: 1197 bp
atggcaaaaagcaacaacttctgctgggcattcttacgtctcttctcatgttcagttgcgttctttttcattccagccaaagctgcattgaagacctaccagttcaatattcaagtgaagaatgtgagcaggttgtgccattctaagccaattgttacagttaatgggatgttccctggacctacaatctatgctagagaaggcaatacacttctagttaatgttaccaaccatgcacagtataacatgtcaattcattggcatggtctaaggcaatattatagaaatgggtgggcagatggacctgcttatataacacaatgtccgatattcaagactggaaacttttacacctacaatatgacaatcatagggcaaataggaactctatggtggaatgctcacatattttggctgagaaccactgtctatggagcaattgtcatcctgcccacacaggggactggctttccttttcctcagccttacagagaaactaatctcatgttagatacctttgcaatggaggttgaacagcaaaagacttacctgctacggatcatcaatgctgcactcaatgacgagctattctttgcaattgctggccacaatttgatagtaaaccaagtccctagtagatacttcacggctgcaaggtcattcatggatgcacctctttccatagacaacaaaactgccactgcaatcctacaatataaaggcatccctaattctgtgctgccagtcctttcccaaattccagcactcaatgacacagcttttgtactgagctacaacgccaagctgagaagcctaaacacagcaaagtacccagcaaatgtacctcttaaagtcgatagacatcttttctacacagttggtttgggaatcaaccaatgcactacttgcctgaatggaacacagctcactgcttctttgaacagcatcacattcgtgatgccccaagttggactgtttcaagctcattacttcaacaccaagggggtattttccacagatttccctgaccgcccaccaacaccgttcaattacactggtgcaccactcactgccaaccttgggactaaactaggcactcggctaagcaagattgcctttaattcaacagtagagttggtgctacaagacaccaatcttctcacagtggaatcccatccaatccaccttcatggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

398

Amino Acids

44.61

Weight (kDa)

9.4

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 120, 313, 558
AciI CCGC 1 cut(s) 1030
AclWI GGATC 1 cut(s) 566
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 1 cut(s) 756
AfaI GTAC 3 cut(s) 786, 830, 843
AfiI CCNNNNNNNGG 4 cut(s) 458, 459, 968, 1080
AflIII ACRYGT 1 cut(s) 246
AjnI CCWGG 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 953
AluBI AGCT 7 cut(s) 83, 586, 779, 792, 805, 925, 983
AluI AGCT 7 cut(s) 83, 586, 779, 792, 805, 925, 983
Alw21I GWGCWC 1 cut(s) 1063
Alw26I GTCTC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 1059
AlwI GGATC 1 cut(s) 566
AoxI GGCC 1 cut(s) 604
ApaLI GTGCAC 1 cut(s) 1059
ApeKI GCWGC 4 cut(s) 83, 569, 650, 739
ApoI RAATTY 1 cut(s) 756
ArsI GACNNNNNNTTYG 2 cut(s) 764, 796
AspS9I GGNCC 2 cut(s) 179, 302
AvaII GGWCC 2 cut(s) 179, 302
BaeGI GKGCMC 1 cut(s) 1063
BalI TGGCCA 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 1063
BbvCI CCTCAGC 1 cut(s) 480
BbvI GCAGC 4 cut(s) 70, 556, 637, 726
BccI CCATC 2 cut(s) 293, 1182
BceAI ACGGC 1 cut(s) 663
BcgI CGANNNNNNTGC 2 cut(s) 934, 968
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 4 cut(s) 195, 215, 633, 1091
BfuAI ACCTGC 3 cut(s) 120, 313, 558
BisI GCNGC 4 cut(s) 84, 570, 651, 740
BlpI GCTNAGC 1 cut(s) 1103
BlsI GCNGC 4 cut(s) 85, 571, 652, 741
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 2 cut(s) 179, 302
BmgT120I GGNCC 2 cut(s) 179, 302
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 4 cut(s) 658, 732, 948, 954
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 480
Bpu1102I GCTNAGC 1 cut(s) 1103
BsaBI GATNNNNATC 1 cut(s) 861
BsaJI CCNNGG 3 cut(s) 175, 999, 1078
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 458, 459, 968, 1080
Bse1I ACTGG 5 cut(s) 100, 343, 469, 743, 1060
Bse3DI GCAATG 1 cut(s) 528
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 175, 999, 1078
BseGI GGATG 5 cut(s) 174, 444, 673, 723, 1174
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 4 cut(s) 458, 459, 968, 1080
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 4 cut(s) 407, 494, 779, 797
BseNI ACTGG 5 cut(s) 100, 343, 469, 743, 1060
BseSI GKGCMC 1 cut(s) 1063
BseXI GCAGC 4 cut(s) 70, 556, 637, 726
BseYI CCCAGC 2 cut(s) 24, 832
BsgI GTGCAG 1 cut(s) 555
BshFI GGCC 1 cut(s) 606
BsiHKAI GWGCWC 1 cut(s) 1063
BslFI GGGAC 3 cut(s) 475, 614, 1096
BslI CCNNNNNNNGG 4 cut(s) 458, 459, 968, 1080
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 3 cut(s) 475, 614, 1096
BsmI GAATGC 2 cut(s) 29, 403
BsnI GGCC 1 cut(s) 606
Bsp1286I GDGCHC 1 cut(s) 1063
Bsp143I GATC 1 cut(s) 558
Bsp1720I GCTNAGC 1 cut(s) 1103
BspACI CCGC 1 cut(s) 1030
BspANI GGCC 1 cut(s) 606
BspCNI CTCAG 4 cut(s) 408, 493, 780, 798
BspMI ACCTGC 3 cut(s) 120, 313, 558
BspPI GGATC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 5 cut(s) 100, 343, 469, 743, 1060
BssECI CCNNGG 3 cut(s) 175, 999, 1078
BssMI GATC 1 cut(s) 558
BssT1I CCWWGG 2 cut(s) 999, 1078
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 8 cut(s) 160, 240, 427, 877, 975, 1044, 1129, 1165
Bst6I CTCTTC 1 cut(s) 47
BstAPI GCANNNNNTGC 2 cut(s) 135, 906
BstC8I GCNNGC 1 cut(s) 604
BstDEI CTNAG 7 cut(s) 144, 269, 416, 480, 788, 806, 1103
BstF5I GGATG 5 cut(s) 174, 444, 673, 723, 1174
BstKTI GATC 1 cut(s) 561
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 558
BstMWI GCNNNNNNNGC 3 cut(s) 83, 135, 906
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 175
BstSLI GKGCMC 1 cut(s) 1063
BstV1I GCAGC 4 cut(s) 70, 556, 637, 726
BstV2I GAAGAC 1 cut(s) 98
BstXI CCANNNNNNTGG 1 cut(s) 1190
BsuRI GGCC 1 cut(s) 606
BtsCI GGATG 5 cut(s) 174, 444, 673, 723, 1174
BtsI GCAGTG 3 cut(s) 699, 927, 1068
BtsIMutI CAGTG 6 cut(s) 423, 699, 927, 1053, 1068, 1170
BveI ACCTGC 3 cut(s) 120, 313, 558
Cac8I GCNNGC 1 cut(s) 604
Cfr13I GGNCC 2 cut(s) 179, 302
Csp6I GTAC 3 cut(s) 785, 829, 842
CviAII CATG 7 cut(s) 48, 233, 247, 263, 505, 664, 1190
CviQI GTAC 3 cut(s) 785, 829, 842
DdeI CTNAG 7 cut(s) 144, 269, 416, 480, 788, 806, 1103
DpnI GATC 1 cut(s) 560
DpnII GATC 1 cut(s) 558
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 999, 1078
Eco47I GGWCC 2 cut(s) 179, 302
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 2 cut(s) 999, 1078
ErhI CCWWGG 2 cut(s) 999, 1078
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 7 cut(s) 51, 236, 250, 266, 508, 667, 1193
FalI AAGNNNNNCTT 2 cut(s) 1100, 1132
FaqI GGGAC 3 cut(s) 475, 614, 1096
FatI CATG 7 cut(s) 47, 232, 246, 262, 504, 663, 1189
Fnu4HI GCNGC 4 cut(s) 84, 570, 651, 740
FokI GGATG 5 cut(s) 181, 431, 680, 710, 1161
Fsp4HI GCNGC 4 cut(s) 84, 570, 651, 740
FspBI CTAG 4 cut(s) 195, 215, 633, 1091
GluI GCNGC 4 cut(s) 84, 570, 651, 740
GsaI CCCAGC 2 cut(s) 28, 836
HaeIII GGCC 1 cut(s) 606
Hin1II CATG 7 cut(s) 51, 236, 250, 266, 508, 667, 1193
HinfI GANTC 2 cut(s) 888, 1169
Hpy166II GTNNAC 2 cut(s) 622, 1061
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 2 cut(s) 334, 955
Hpy8I GTNNAC 2 cut(s) 622, 1061
HpyAV CCTTC 2 cut(s) 194, 1196
HpyCH4III ACNGT 8 cut(s) 160, 240, 427, 877, 975, 1044, 1129, 1165
HpyCH4IV ACGT 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 135, 906
HpyF3I CTNAG 7 cut(s) 144, 269, 416, 480, 788, 806, 1103
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 7 cut(s) 51, 236, 250, 266, 508, 667, 1193
Kzo9I GATC 1 cut(s) 558
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 4 cut(s) 70, 556, 637, 726
LweI GCATC 4 cut(s) 658, 732, 948, 954
MaeI CTAG 4 cut(s) 195, 215, 633, 1091
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 2 cut(s) 154, 223
MalI GATC 1 cut(s) 560
MboI GATC 1 cut(s) 558
MboII GAAGA 4 cut(s) 34, 103, 130, 1148
MfeI CAATTG 3 cut(s) 150, 438, 597
MhlI GDGCHC 1 cut(s) 1063
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 9 cut(s) 150, 252, 438, 597, 610, 730, 756, 1048, 1120
MluNI TGGCCA 1 cut(s) 606
MmeI TCCRAC 1 cut(s) 949
MnlI CCTC 4 cut(s) 489, 520, 684, 855
Mox20I TGGCCA 1 cut(s) 606
MscI TGGCCA 1 cut(s) 606
MseI TTAA 5 cut(s) 162, 219, 849, 1119, 1195
MslI CAYNNNNRTG 3 cut(s) 261, 953, 1188
Msp20I TGGCCA 1 cut(s) 606
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 3 cut(s) 150, 438, 597
Mva1269I GAATGC 2 cut(s) 29, 403
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 83, 135, 906
NdeII GATC 1 cut(s) 558
NlaIII CATG 7 cut(s) 51, 236, 250, 266, 508, 667, 1193
NmeAIII GCCGAG 1 cut(s) 1078
NspI RCATGY 1 cut(s) 250
OliI CACNNNNGTG 1 cut(s) 953
PciI ACATGT 1 cut(s) 246
PctI GAATGC 2 cut(s) 29, 403
PfeI GAWTC 2 cut(s) 888, 1169
PkrI GCNGC 4 cut(s) 85, 571, 652, 741
PscI ACATGT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 175
PspFI CCCAGC 2 cut(s) 24, 832
PspGI CCWGG 1 cut(s) 175
PspPI GGNCC 2 cut(s) 179, 302
RsaI GTAC 3 cut(s) 786, 830, 843
RsaNI GTAC 3 cut(s) 785, 829, 842
RseI CAYNNNNRTG 3 cut(s) 261, 953, 1188
SaqAI TTAA 5 cut(s) 162, 219, 849, 1119, 1195
SatI GCNGC 4 cut(s) 84, 570, 651, 740
Sau3AI GATC 1 cut(s) 558
Sau96I GGNCC 2 cut(s) 179, 302
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 1 cut(s) 1063
SfaNI GCATC 4 cut(s) 658, 732, 948, 954
SinI GGWCC 2 cut(s) 179, 302
SmiMI CAYNNNNRTG 3 cut(s) 261, 953, 1188
Sse9I AATT 9 cut(s) 150, 252, 438, 597, 610, 730, 756, 1048, 1120
SsiI CCGC 1 cut(s) 1030
SspI AATATT 2 cut(s) 109, 278
SspMI CTAG 4 cut(s) 195, 215, 633, 1091
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 2 cut(s) 999, 1078
TaaI ACNGT 8 cut(s) 160, 240, 427, 877, 975, 1044, 1129, 1165
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 855
TasI AATT 9 cut(s) 150, 252, 438, 597, 610, 730, 756, 1048, 1120
TatI WGTACW 1 cut(s) 784
TfiI GAWTC 2 cut(s) 888, 1169
Tru1I TTAA 5 cut(s) 162, 219, 849, 1119, 1195
Tru9I TTAA 5 cut(s) 162, 219, 849, 1119, 1195
TscAI CASTG 6 cut(s) 430, 706, 934, 1060, 1075, 1170
TseI GCWGC 4 cut(s) 83, 569, 650, 739
TspDTI ATGAA 4 cut(s) 58, 245, 652, 1178
TspGWI ACGGA 1 cut(s) 571
TspRI CASTG 6 cut(s) 430, 706, 934, 1060, 1075, 1170
VneI GTGCAC 1 cut(s) 1059
VpaK11BI GGWCC 2 cut(s) 179, 302
XapI RAATTY 1 cut(s) 756
XceI RCATGY 1 cut(s) 250
XspI CTAG 4 cut(s) 195, 215, 633, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.