pycom05g05550

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000659
Physical Location & Seq
Forward (+)
6753652 .. 6754673
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g05550.1

Sequence Viewer

Length: 789 bp
ATGTCCGATCCCTACAAAATTTTCCATTGTATACAAACAATCCGGTCTAAAAAAATGGTGAAAACCAACAATTTCTGCTGGGGTTCTGGTCTTCTCTTATGCTTTGTTGGGTTCTTTTTAACTCCGGGTGAAGCTGCTTTGAAGAAGTATCAATTCGATGTTCAAGTGAAGAATGTGAGCAGGTTGTGCCATTCGAAGCCAATTGTTATAGTAAATGGGAGGTTCCCTGGACCTACAGTTTATGCTAGTGAAGGAGATACACTTCTTATAAATGTTACCAACCATGCAAAATATAACATGTCAATTCATTGGCATGGACTGAAGCAATATCGCAATGGGTGGGCAGACGGGCCCGCCTACATCACACAATGCCCTATCAAAACAGGGAACAGCTATACCTACAATATTACTGTAACCGGGCAAAGGGGAACACTTTGGTGGCATGCTCACATCTTTTGGCTAAGAGCTACTGTCCACGGAGCGATTGTCATCATGCCGAAACAAGGGGTTGGATTTCCATTTCCTCAGCCTTACAGTGAAGCTAACATTGTCTTAGGTGGGAGAAAAATAATTGTATTGTTTCTTGTCAATGCTGTAGGAGAATGGTGGAATAACGACGTCGAAGAGGTTGTTAAGAAAGGGAACTTACTTGGATTGCCACCAGATATGTCAGATGCACATACCATCAATGGGAAGCCAGGTCCTCTGTTTCCATGTTCTGAAAAACGTAAGCCAGCTCCTTCTAAAGAGAGATTCTTAGACACCAGATATTCAAGATGCTTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

263

Amino Acids

29.57

Weight (kDa)

9.54

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 54 - 168 9.3e-42 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AatII GACGTC 1 cut(s) 621
Acc36I ACCTGC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 31
AciI CCGC 1 cut(s) 354
AclWI GGATC 1 cut(s) 2
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 618
AfiI CCNNNNNNNGG 3 cut(s) 423, 503, 690
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 3 cut(s) 142, 164, 774
AjnI CCWGG 2 cut(s) 226, 697
AleI CACNNNNGTG 1 cut(s) 436
AluBI AGCT 5 cut(s) 134, 393, 467, 542, 737
AluI AGCT 5 cut(s) 134, 393, 467, 542, 737
AlwI GGATC 1 cut(s) 2
AoxI GGCC 1 cut(s) 350
ApaI GGGCCC 1 cut(s) 354
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 18
AspS9I GGNCC 4 cut(s) 230, 350, 351, 701
AsuC2I CCSGG 2 cut(s) 126, 418
AsuHPI GGTGA 2 cut(s) 70, 140
AsuII TTCGAA 1 cut(s) 194
AvaII GGWCC 2 cut(s) 230, 701
BaeGI GKGCMC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 692
BciT130I CCWGG 2 cut(s) 228, 699
BcnI CCSGG 2 cut(s) 126, 418
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 2 cut(s) 234, 594
BfuAI ACCTGC 1 cut(s) 171
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 4 cut(s) 126, 228, 418, 699
Bme18I GGWCC 2 cut(s) 230, 701
BmgT120I GGNCC 4 cut(s) 230, 350, 351, 701
BmiI GGNNCC 2 cut(s) 224, 352
BmrFI CCNGG 4 cut(s) 126, 228, 418, 699
BmsI GCATC 2 cut(s) 664, 767
BpiI GAAGAC 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 525
Bpu14I TTCGAA 1 cut(s) 194
BpuMI CCSGG 2 cut(s) 126, 418
BsaBI GATNNNNATC 1 cut(s) 488
BsaHI GRCGYC 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 226, 475
BsaWI WCCGGW 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bsc4I CCNNNNNNNGG 3 cut(s) 423, 503, 690
Bse3DI GCAATG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 488
BseBI CCWGG 2 cut(s) 228, 699
BseDI CCNNGG 2 cut(s) 226, 475
BseJI GATNNNNATC 1 cut(s) 488
BseLI CCNNNNNNNGG 3 cut(s) 423, 503, 690
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 539
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 352
BsiSI CCGG 3 cut(s) 43, 125, 417
BslI CCNNNNNNNGG 3 cut(s) 423, 503, 690
BsnI GGCC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 194
Bsp120I GGGCCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 1 cut(s) 354
BspANI GGCC 1 cut(s) 352
BspCNI CTCAG 1 cut(s) 538
BspLI GGNNCC 2 cut(s) 224, 352
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 1 cut(s) 2
BspT104I TTCGAA 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 226, 475
BssMI GATC 1 cut(s) 7
BssNAI GTATAC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 618
Bst1107I GTATAC 1 cut(s) 32
Bst2UI CCWGG 2 cut(s) 228, 699
Bst4CI ACNGT 4 cut(s) 238, 412, 472, 536
Bst6I CTCTTC 1 cut(s) 618
BstACI GRCGYC 1 cut(s) 618
BstAPI GCANNNNNTGC 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 194
BstC8I GCNNGC 3 cut(s) 354, 444, 735
BstDEI CTNAG 4 cut(s) 461, 525, 553, 757
BstDSI CCRYGG 1 cut(s) 475
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNI CCWGG 2 cut(s) 228, 699
BstNSI RCATGY 2 cut(s) 301, 446
BstSCI CCNGG 4 cut(s) 124, 226, 416, 697
BstSFI CTRYAG 2 cut(s) 234, 594
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 83
BstZ17I GTATAC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 352
BtgI CCRYGG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 541
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 354, 444, 735
Cfr13I GGNCC 4 cut(s) 230, 350, 351, 701
CviAII CATG 6 cut(s) 284, 298, 314, 443, 493, 714
DdeI CTNAG 4 cut(s) 461, 525, 553, 757
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco24I GRGCYC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 230, 701
Eco57I CTGAAG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 701
EcoRII CCWGG 2 cut(s) 226, 697
EcoT38I GRGCYC 1 cut(s) 354
FaeI CATG 6 cut(s) 287, 301, 317, 446, 496, 717
FatI CATG 6 cut(s) 283, 297, 313, 442, 492, 713
FauI CCCGC 1 cut(s) 361
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 246
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 1 cut(s) 352
HapII CCGG 3 cut(s) 43, 125, 417
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 6 cut(s) 287, 301, 317, 446, 496, 717
HinfI GANTC 1 cut(s) 753
HpaII CCGG 3 cut(s) 43, 125, 417
HphI GGTGA 2 cut(s) 70, 140
Hpy166II GTNNAC 2 cut(s) 32, 475
Hpy188I TCNGA 3 cut(s) 7, 673, 721
Hpy188III TCNNGA 1 cut(s) 774
Hpy8I GTNNAC 2 cut(s) 32, 475
Hpy99I CGWCG 2 cut(s) 620, 623
HpyAV CCTTC 2 cut(s) 245, 750
HpyCH4III ACNGT 4 cut(s) 238, 412, 472, 536
HpyCH4IV ACGT 2 cut(s) 618, 727
HpyCH4V TGCA 2 cut(s) 287, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 4 cut(s) 461, 525, 553, 757
HpySE526I ACGT 2 cut(s) 618, 727
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 6 cut(s) 287, 301, 317, 446, 496, 717
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 2 cut(s) 479, 742
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 2 cut(s) 664, 767
MaeI CTAG 1 cut(s) 246
MaeII ACGT 2 cut(s) 618, 727
MaeIII GTNAC 2 cut(s) 274, 412
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 4 cut(s) 83, 154, 181, 635
MfeI CAATTG 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 6 cut(s) 18, 70, 152, 201, 303, 570
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 4 cut(s) 213, 534, 619, 714
MseI TTAA 2 cut(s) 119, 633
MslI CAYNNNNRTG 2 cut(s) 312, 436
MspI CCGG 3 cut(s) 43, 125, 417
MspR9I CCNGG 4 cut(s) 126, 228, 418, 699
MunI CAATTG 1 cut(s) 201
MvaI CCWGG 2 cut(s) 228, 699
MwoI GCNNNNNNNGC 1 cut(s) 186
NciI CCSGG 2 cut(s) 126, 418
NdeII GATC 1 cut(s) 7
NlaIII CATG 6 cut(s) 287, 301, 317, 446, 496, 717
NlaIV GGNNCC 2 cut(s) 224, 352
NspI RCATGY 2 cut(s) 301, 446
NspV TTCGAA 1 cut(s) 194
OliI CACNNNNGTG 1 cut(s) 436
PaeI GCATGC 1 cut(s) 446
PciI ACATGT 1 cut(s) 297
PfeI GAWTC 1 cut(s) 753
PkrI GCNGC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 701
PscI ACATGT 1 cut(s) 297
PsiI TTATAA 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 2 cut(s) 226, 697
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 2 cut(s) 226, 697
PspN4I GGNNCC 2 cut(s) 224, 352
PspOMI GGGCCC 1 cut(s) 350
PspPI GGNCC 4 cut(s) 230, 350, 351, 701
PspPPI RGGWCCY 1 cut(s) 701
RseI CAYNNNNRTG 2 cut(s) 312, 436
SaqAI TTAA 2 cut(s) 119, 633
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 4 cut(s) 230, 350, 351, 701
ScrFI CCNGG 4 cut(s) 126, 228, 418, 699
SduI GDGCHC 1 cut(s) 354
SfaNI GCATC 2 cut(s) 664, 767
SfcI CTRYAG 2 cut(s) 234, 594
SfuI TTCGAA 1 cut(s) 194
SinI GGWCC 2 cut(s) 230, 701
SmiMI CAYNNNNRTG 2 cut(s) 312, 436
SphI GCATGC 1 cut(s) 446
Sse9I AATT 6 cut(s) 18, 70, 152, 201, 303, 570
SsiI CCGC 1 cut(s) 354
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 4 cut(s) 124, 226, 416, 697
TaaI ACNGT 4 cut(s) 238, 412, 472, 536
TaiI ACGT 2 cut(s) 621, 730
TaqI TCGA 3 cut(s) 156, 194, 621
TasI AATT 6 cut(s) 18, 70, 152, 201, 303, 570
TfiI GAWTC 1 cut(s) 753
Tru1I TTAA 2 cut(s) 119, 633
Tru9I TTAA 2 cut(s) 119, 633
TscAI CASTG 1 cut(s) 541
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 1 cut(s) 541
VpaK11BI GGWCC 2 cut(s) 230, 701
XapI RAATTY 1 cut(s) 18
XceI RCATGY 2 cut(s) 301, 446
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 1 cut(s) 246
ZraI GACGTC 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.