Rh6DG113900

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000659
Physical Location & Seq
Forward (+)
15070646 .. 15070942
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG113900.1

Sequence Viewer

Length: 297 bp
ATGAAACATTTGGTGGATTTATTTTCCTGGCATGGTCCAAGGCAATATTATAGAAATGGGTGGGCAGATGGACCTGCTTATATAACACAATGTCCGATCAAGACTGGAAACTTTTACACCTACAATATGACAATCACAGGGCAAACAGGAACTCTATGGTGGCATGCTCACATATTTTGGCTGAGAGCCACTGTCTATGGAGCAATTGTCATCGTGCCTAGACAGGGGACTGGCTTTCCTTTTCCTCAGCCTTACAGAGAAACTAATCTTGTGTTGGGTGAGTTTGAGTTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

98

Amino Acids

11.42

Weight (kDa)

8.85

Isoelectric Point (pI)

20.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 8 - 75 2.5e-19 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 224
AjnI CCWGG 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 35, 71
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 35, 71
BbvCI CCTCAGC 1 cut(s) 246
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 28
Bme18I GGWCC 2 cut(s) 35, 71
BmgT120I GGNCC 2 cut(s) 35, 71
BmrFI CCNGG 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 2 cut(s) 109, 235
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 38
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 2 cut(s) 173, 260
BseNI ACTGG 2 cut(s) 109, 235
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 96
BspCNI CTCAG 2 cut(s) 174, 259
BspMI ACCTGC 1 cut(s) 82
BsrI ACTGG 2 cut(s) 109, 235
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 182, 246
BstKTI GATC 1 cut(s) 99
BstMBI GATC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 28
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 189
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 2 cut(s) 35, 71
CviAII CATG 2 cut(s) 32, 164
CviJI RGCY 4 cut(s) 181, 188, 234, 250
CviKI_1 RGCY 4 cut(s) 181, 188, 234, 250
DdeI CTNAG 2 cut(s) 182, 246
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 35, 71
EcoRII CCWGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 35, 167
FaiI YATR 9 cut(s) 33, 51, 81, 83, 128, 157, 165, 173, 198
FaqI GGGAC 1 cut(s) 241
FatI CATG 2 cut(s) 31, 163
FspBI CTAG 1 cut(s) 219
Hin1II CATG 2 cut(s) 35, 167
HphI GGTGA 1 cut(s) 290
Hpy188I TCNGA 1 cut(s) 96
Hpy188III TCNNGA 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 193
HpyF3I CTNAG 2 cut(s) 182, 246
Hsp92II CATG 2 cut(s) 35, 167
Kzo9I GATC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 8 cut(s) 13, 40, 87, 90, 123, 132, 209, 216
MaeI CTAG 1 cut(s) 219
MalI GATC 1 cut(s) 98
MboI GATC 1 cut(s) 96
MfeI CAATTG 1 cut(s) 204
MluCI AATT 1 cut(s) 204
MnlI CCTC 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 28
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 28
NdeII GATC 1 cut(s) 96
NlaIII CATG 2 cut(s) 35, 167
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 26
PspPI GGNCC 2 cut(s) 35, 71
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 2 cut(s) 35, 71
ScrFI CCNGG 1 cut(s) 28
SetI ASST 2 cut(s) 76, 122
SinI GGWCC 2 cut(s) 35, 71
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 204
SspI AATATT 1 cut(s) 47
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 1 cut(s) 26
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 193
TasI AATT 1 cut(s) 204
TscAI CASTG 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 35, 71
XceI RCATGY 1 cut(s) 167
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.