Rw6G011160

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000659
Physical Location & Seq
Reverse (-)
19624638 .. 19634590
9953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011160.1

Sequence Viewer

Length: 1359 bp
ATGAAGACCTATCAGTTCGATGTGAATTCAAGTAAAGAATGTGGCAGGTCGTGCCATCCTAAACCAATTGTTACAGTTAATGGGATGTTCCCTGGACCTACAATCTATGCTAGAGAAGGTGATACAGTTCTAGTTAATGTTACCAACCATGCACAGTATAGCATAAATGGGTGGGCAGATGGACCTGCTTATATAACACAATGTCCGATCAAGACAAGAAACTTTTACACCTACAATATGACAATCACAGGGCAAAGAGGAACTCTATGGTGGCATGCTCACATATTTTGGCTGAGAGCCACTGTCTATGGAGCAATTGTCATCCTGCCCAGACACGGCACTGGCTTTCCTTTTCCTCAGCCTTGCAGTGAAACTAATCTCGTGTTAGGAGAATGGTGGAATAACGATGTTGAAGAGATTGTTAAACAATGGAACAGACTAGGGTTGCCTCCAAATATGTCAGATGCACATACCATTAATGGGAAGCCAGGGCCGCTCTTTCCATGTTCTGAAAAACATACCTTTGCAATGGAGGTTGAACAGGGAAAGACTTACCTGCTACGGATCGTCAATGCTGCACTCAATGACGAGCTATTCTTTGCAATTGCTGGCCACAACTTGACAGTGGTAGAGGTTGATGCAGTCTATACATCTCAGGCAATACTAATTGCACCAGACAACAAAACTGCCACTGCAATCCTACAATATAAAGGCATCCCTAATTCTGTGGTGCCAGTCCTTTCCCAACTTCCAGCACTCAATGACACAGTTTTTGTACTGAGCTACAATGCCAAGCTGAGAAGCCTAAACACAGAAAAGTACCCAGCAAATGTACCTCTTAAAGTGGATAGACATCTTTTGTTCACAATTGGTTTTGGAATCAACCCATGCACTACTTGCCTGAATGGAACACAGCTCACTGCTTCCTTGAACAACATCACATTAGTGATGCCTCAAATCGGGTTGCTTCAAGCTCATTACTTCAACACCAAGGGGGTATTTTCCACAGATTTCCCTGACCGCCCGCCAACAACGTTCAATTATACTGGTGCCCCACTCACTGCCAACCTTTGGACTAAACTAGGCACCCGGGTAAGCAAGATCTCCTTTAACTCGACAGTAGAGTTGGTGCTACAAGATACCAATCTTCTCACTGTGGAATCCCATCCAATCCACCTTCATGGTTACAATTTTTTCATTGTGGGGACCGGAGTTGGTAACTTTGACCCCAAGAAGGACCCCGCTAAGTTTAACTTGCTGCATACCATGTGGGGAATGAAGACTGCCCTTGTGGTAGAAAATGGGAAAGGCTCAAATCAATCTATCCTGCCTCCACCTGCAGACCTTCCACCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

452

Amino Acids

50.03

Weight (kDa)

8.05

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 12 - 111 3.9e-26 Multicopper oxidase
Cu-oxidase PF00394 125 - 219 4.1e-26 Multicopper oxidase
Cu-oxidase_2 PF07731 337 - 424 2.8e-14 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1345
Acc36I ACCTGC 4 cut(s) 36, 193, 564, 1345
AccB1I GGYRCC 3 cut(s) 730, 1049, 1085
AccB7I CCANNNNNTGG 1 cut(s) 1071
AccBSI CCGCTC 1 cut(s) 496
AciI CCGC 4 cut(s) 494, 1021, 1025, 1242
AclI AACGTT 1 cut(s) 1034
AclWI GGATC 1 cut(s) 572
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 3 cut(s) 777, 821, 834
AfiI CCNNNNNNNGG 5 cut(s) 335, 480, 959, 1071, 1234
AgsI TTSAA 7 cut(s) 30, 413, 539, 931, 971, 985, 1039
AjnI CCWGG 2 cut(s) 91, 487
AleI CACNNNNGTG 1 cut(s) 944
AluBI AGCT 5 cut(s) 592, 783, 796, 916, 974
AluI AGCT 5 cut(s) 592, 783, 796, 916, 974
AlwI GGATC 1 cut(s) 572
Ama87I CYCGRG 1 cut(s) 1089
AoxI GGCC 2 cut(s) 491, 610
ApeKI GCWGC 2 cut(s) 575, 1258
ApoI RAATTY 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 755, 787
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 5 cut(s) 95, 182, 491, 1206, 1237
AsuC2I CCSGG 2 cut(s) 1090, 1091
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 1089
AvaII GGWCC 4 cut(s) 95, 182, 1206, 1237
BaeGI GKGCMC 1 cut(s) 1054
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 3 cut(s) 730, 1049, 1085
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 2 cut(s) 11, 1286
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 562, 1245
BccI CCATC 3 cut(s) 63, 173, 1173
BceAI ACGGC 1 cut(s) 352
BciT130I CCWGG 2 cut(s) 93, 489
BcnI CCSGG 2 cut(s) 1090, 1091
BfaI CTAG 4 cut(s) 111, 131, 440, 1082
BfmI CTRYAG 1 cut(s) 1338
BfuAI ACCTGC 4 cut(s) 36, 193, 564, 1345
BglII AGATCT 1 cut(s) 1101
BisI GCNGC 3 cut(s) 494, 576, 1259
BlsI GCNGC 3 cut(s) 495, 577, 1260
Bme1390I CCNGG 4 cut(s) 93, 489, 1090, 1091
Bme18I GGWCC 4 cut(s) 95, 182, 1206, 1237
BmeT110I CYCGRG 1 cut(s) 1089
BmgT120I GGNCC 5 cut(s) 95, 182, 491, 1206, 1237
BmiI GGNNCC 5 cut(s) 732, 1051, 1087, 1207, 1239
BmrFI CCNGG 4 cut(s) 93, 489, 1090, 1091
BmsI GCATC 4 cut(s) 454, 628, 723, 939
BpiI GAAGAC 2 cut(s) 11, 1286
Bpu10I CCTNAGC 1 cut(s) 357
BpuMI CCSGG 2 cut(s) 1090, 1091
BsaBI GATNNNNATC 2 cut(s) 852, 1143
BsaJI CCNNGG 4 cut(s) 91, 488, 990, 1089
BsaWI WCCGGW 1 cut(s) 1208
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 480, 959, 1071, 1234
Bse1I ACTGG 3 cut(s) 346, 734, 1051
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 2 cut(s) 852, 1143
BseBI CCWGG 2 cut(s) 93, 489
BseDI CCNNGG 4 cut(s) 91, 488, 990, 1089
BseGI GGATG 5 cut(s) 55, 90, 321, 714, 1165
BseJI GATNNNNATC 2 cut(s) 852, 1143
BseLI CCNNNNNNNGG 5 cut(s) 335, 480, 959, 1071, 1234
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 5 cut(s) 284, 371, 668, 770, 788
BseNI ACTGG 3 cut(s) 346, 734, 1051
BseSI GKGCMC 1 cut(s) 1054
BseXI GCAGC 2 cut(s) 562, 1245
BseYI CCCAGC 1 cut(s) 823
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 2 cut(s) 493, 612
BshNI GGYRCC 3 cut(s) 730, 1049, 1085
BsiHKCI CYCGRG 1 cut(s) 1089
BsiSI CCGG 2 cut(s) 1090, 1209
BslFI GGGAC 1 cut(s) 1219
BslI CCNNNNNNNGG 5 cut(s) 335, 480, 959, 1071, 1234
BsmFI GGGAC 1 cut(s) 1219
BsnI GGCC 2 cut(s) 493, 612
BsoBI CYCGRG 1 cut(s) 1089
Bsp1286I GDGCHC 1 cut(s) 1054
Bsp143I GATC 3 cut(s) 207, 564, 1101
BspACI CCGC 4 cut(s) 494, 1021, 1025, 1242
BspANI GGCC 2 cut(s) 493, 612
BspCNI CTCAG 5 cut(s) 285, 370, 667, 771, 789
BspLI GGNNCC 5 cut(s) 732, 1051, 1087, 1207, 1239
BspMAI CTGCAG 1 cut(s) 1342
BspMI ACCTGC 4 cut(s) 36, 193, 564, 1345
BspPI GGATC 1 cut(s) 572
BspT107I GGYRCC 3 cut(s) 730, 1049, 1085
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 3 cut(s) 346, 734, 1051
BssECI CCNNGG 4 cut(s) 91, 488, 990, 1089
BssMI GATC 3 cut(s) 207, 564, 1101
BssSI CACGAG 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 990
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 2 cut(s) 93, 489
Bst4CI ACNGT 8 cut(s) 76, 127, 156, 304, 625, 769, 1120, 1156
Bst6I CTCTTC 1 cut(s) 408
BstAPI GCANNNNNTGC 2 cut(s) 51, 897
BstC8I GCNNGC 3 cut(s) 276, 610, 1025
BstDEI CTNAG 6 cut(s) 293, 357, 654, 779, 797, 1245
BstF5I GGATG 5 cut(s) 55, 90, 321, 714, 1165
BstKTI GATC 3 cut(s) 210, 567, 1104
BstMBI GATC 3 cut(s) 207, 564, 1101
BstMWI GCNNNNNNNGC 3 cut(s) 51, 493, 897
BstNI CCWGG 2 cut(s) 93, 489
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 4 cut(s) 91, 487, 1088, 1089
BstSFI CTRYAG 1 cut(s) 1338
BstSLI GKGCMC 1 cut(s) 1054
BstV1I GCAGC 2 cut(s) 562, 1245
BstV2I GAAGAC 2 cut(s) 11, 1286
BstX2I RGATCY 1 cut(s) 1101
BstXI CCANNNNNNTGG 1 cut(s) 1181
BstYI RGATCY 1 cut(s) 1101
BsuRI GGCC 2 cut(s) 493, 612
BtsCI GGATG 5 cut(s) 55, 90, 321, 714, 1165
BtsI GCAGTG 4 cut(s) 373, 690, 918, 1059
BtsIMutI CAGTG 8 cut(s) 300, 339, 373, 630, 690, 918, 1059, 1152
BveI ACCTGC 4 cut(s) 36, 193, 564, 1345
Cac8I GCNNGC 3 cut(s) 276, 610, 1025
Cfr13I GGNCC 5 cut(s) 95, 182, 491, 1206, 1237
Cfr9I CCCGGG 1 cut(s) 1089
Csp6I GTAC 3 cut(s) 776, 820, 833
CviAII CATG 6 cut(s) 149, 275, 504, 888, 1181, 1267
CviQI GTAC 3 cut(s) 776, 820, 833
DdeI CTNAG 6 cut(s) 293, 357, 654, 779, 797, 1245
DpnI GATC 3 cut(s) 209, 566, 1103
DpnII GATC 3 cut(s) 207, 564, 1101
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 990
Eco47I GGWCC 4 cut(s) 95, 182, 1206, 1237
Eco88I CYCGRG 1 cut(s) 1089
EcoO109I RGGNCCY 1 cut(s) 1237
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 91, 487
EcoT14I CCWWGG 1 cut(s) 990
ErhI CCWWGG 1 cut(s) 990
FaeI CATG 6 cut(s) 152, 278, 507, 891, 1184, 1270
FalI AAGNNNNNCTT 4 cut(s) 1091, 1123, 1238, 1270
FaqI GGGAC 1 cut(s) 1219
FatI CATG 6 cut(s) 148, 274, 503, 887, 1180, 1266
FauI CCCGC 2 cut(s) 1032, 1249
Fnu4HI GCNGC 3 cut(s) 494, 576, 1259
FokI GGATG 5 cut(s) 42, 97, 308, 701, 1152
Fsp4HI GCNGC 3 cut(s) 494, 576, 1259
FspBI CTAG 4 cut(s) 111, 131, 440, 1082
GluI GCNGC 3 cut(s) 494, 576, 1259
GsaI CCCAGC 1 cut(s) 827
HaeIII GGCC 2 cut(s) 493, 612
HapII CCGG 2 cut(s) 1090, 1209
Hin1II CATG 6 cut(s) 152, 278, 507, 891, 1184, 1270
HinfI GANTC 2 cut(s) 879, 1160
HpaII CCGG 2 cut(s) 1090, 1209
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 864
Hpy188I TCNGA 3 cut(s) 207, 463, 511
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 864
HpyAV CCTTC 4 cut(s) 110, 1187, 1228, 1355
HpyCH4III ACNGT 8 cut(s) 76, 127, 156, 304, 625, 769, 1120, 1156
HpyCH4IV ACGT 1 cut(s) 1034
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 493, 897
HpyF3I CTNAG 6 cut(s) 293, 357, 654, 779, 797, 1245
HpySE526I ACGT 1 cut(s) 1034
Hsp92II CATG 6 cut(s) 152, 278, 507, 891, 1184, 1270
Kzo9I GATC 3 cut(s) 207, 564, 1101
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 2 cut(s) 562, 1245
LweI GCATC 4 cut(s) 454, 628, 723, 939
MaeI CTAG 4 cut(s) 111, 131, 440, 1082
MaeII ACGT 1 cut(s) 1034
MaeIII GTNAC 4 cut(s) 70, 139, 1184, 1217
MalI GATC 3 cut(s) 209, 566, 1103
MbiI CCGCTC 1 cut(s) 496
MboI GATC 3 cut(s) 207, 564, 1101
MboII GAAGA 4 cut(s) 16, 425, 1139, 1291
MfeI CAATTG 4 cut(s) 66, 315, 603, 867
MflI RGATCY 1 cut(s) 1101
MhlI GDGCHC 1 cut(s) 1054
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 9 cut(s) 25, 66, 315, 603, 666, 721, 867, 1039, 1189
MluNI TGGCCA 1 cut(s) 612
MnlI CCTC 8 cut(s) 251, 366, 459, 526, 625, 846, 963, 1341
Mox20I TGGCCA 1 cut(s) 612
MscI TGGCCA 1 cut(s) 612
MseI TTAA 7 cut(s) 78, 135, 423, 477, 840, 1110, 1251
MslI CAYNNNNRTG 2 cut(s) 944, 1179
Msp20I TGGCCA 1 cut(s) 612
MspI CCGG 2 cut(s) 1090, 1209
MspR9I CCNGG 4 cut(s) 93, 489, 1090, 1091
MunI CAATTG 4 cut(s) 66, 315, 603, 867
MvaI CCWGG 2 cut(s) 93, 489
MwoI GCNNNNNNNGC 3 cut(s) 51, 493, 897
NciI CCSGG 2 cut(s) 1090, 1091
NdeII GATC 3 cut(s) 207, 564, 1101
NlaIII CATG 6 cut(s) 152, 278, 507, 891, 1184, 1270
NlaIV GGNNCC 5 cut(s) 732, 1051, 1087, 1207, 1239
NspI RCATGY 1 cut(s) 278
OliI CACNNNNGTG 1 cut(s) 944
PaeI GCATGC 1 cut(s) 278
PaqCI CACCTGC 1 cut(s) 1345
PfeI GAWTC 2 cut(s) 879, 1160
PflMI CCANNNNNTGG 1 cut(s) 1071
PkrI GCNGC 3 cut(s) 495, 577, 1260
PpuMI RGGWCCY 1 cut(s) 1237
PshBI ATTAAT 1 cut(s) 477
Psp1406I AACGTT 1 cut(s) 1034
Psp5II RGGWCCY 1 cut(s) 1237
Psp6I CCWGG 2 cut(s) 91, 487
PspFI CCCAGC 1 cut(s) 823
PspGI CCWGG 2 cut(s) 91, 487
PspN4I GGNNCC 5 cut(s) 732, 1051, 1087, 1207, 1239
PspPI GGNCC 5 cut(s) 95, 182, 491, 1206, 1237
PspPPI RGGWCCY 1 cut(s) 1237
PstI CTGCAG 1 cut(s) 1342
PsuI RGATCY 1 cut(s) 1101
RsaI GTAC 3 cut(s) 777, 821, 834
RsaNI GTAC 3 cut(s) 776, 820, 833
RseI CAYNNNNRTG 2 cut(s) 944, 1179
SaqAI TTAA 7 cut(s) 78, 135, 423, 477, 840, 1110, 1251
SatI GCNGC 3 cut(s) 494, 576, 1259
Sau3AI GATC 3 cut(s) 207, 564, 1101
Sau96I GGNCC 5 cut(s) 95, 182, 491, 1206, 1237
ScrFI CCNGG 4 cut(s) 93, 489, 1090, 1091
SduI GDGCHC 1 cut(s) 1054
SfaNI GCATC 4 cut(s) 454, 628, 723, 939
SfcI CTRYAG 1 cut(s) 1338
SinI GGWCC 4 cut(s) 95, 182, 1206, 1237
SmaI CCCGGG 1 cut(s) 1091
SmiMI CAYNNNNRTG 2 cut(s) 944, 1179
SphI GCATGC 1 cut(s) 278
Sse9I AATT 9 cut(s) 25, 66, 315, 603, 666, 721, 867, 1039, 1189
SsiI CCGC 4 cut(s) 494, 1021, 1025, 1242
SspMI CTAG 4 cut(s) 111, 131, 440, 1082
StyD4I CCNGG 4 cut(s) 91, 487, 1088, 1089
StyI CCWWGG 1 cut(s) 990
TaaI ACNGT 8 cut(s) 76, 127, 156, 304, 625, 769, 1120, 1156
TaiI ACGT 1 cut(s) 1037
TaqI TCGA 2 cut(s) 18, 1115
TasI AATT 9 cut(s) 25, 66, 315, 603, 666, 721, 867, 1039, 1189
TatI WGTACW 1 cut(s) 775
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 2 cut(s) 879, 1160
Tru1I TTAA 7 cut(s) 78, 135, 423, 477, 840, 1110, 1251
Tru9I TTAA 7 cut(s) 78, 135, 423, 477, 840, 1110, 1251
TscAI CASTG 8 cut(s) 307, 346, 373, 630, 697, 925, 1066, 1159
TseI GCWGC 2 cut(s) 575, 1258
TspDTI ATGAA 4 cut(s) 17, 1169, 1186, 1292
TspGWI ACGGA 1 cut(s) 577
TspMI CCCGGG 1 cut(s) 1089
TspRI CASTG 8 cut(s) 307, 346, 373, 630, 697, 925, 1066, 1159
Van91I CCANNNNNTGG 1 cut(s) 1071
VpaK11BI GGWCC 4 cut(s) 95, 182, 1206, 1237
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 278
XmaI CCCGGG 1 cut(s) 1089
XspI CTAG 4 cut(s) 111, 131, 440, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.