Rroxscaffold_176G00431740

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
OG0000659
Physical Location & Seq
Forward (+)
1577117 .. 1578141
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431740.1

Sequence Viewer

Length: 447 bp
ATGCAGACTCACCCGGGCAACATTCGCAGATCCCACCTACCCCAAATTCCACAAGCTTCTCATTTGGTTTGTTATGCAGTCCAGAAAAAGTTCCACCACATTGAGCTGTTTGTAATCTTAAAAATACTTGTCAGGCCGGATTTGTGTGCAGGACATTTAACCTTCATAGCCAAATCAATTCAACATCAAAGCAGGTCTCTTATACCTGGCGCAAATCAGTATAGTTATACCTTTGTAATGGAGGTTGAACAGGGAAAGACTTACCTGCTACGGATGGTCAATGCTGCACTCAATGAAGAGCTATTCTTTGCAATTGCTGGCCACAACTTGACAGTGGTAGAGGTTGATGCAGTCTATACCAAACCATTTGCATCTCAGGCAATACTAATTGCACCTGGGCAGACAACAAATGTTCTTGTTTGGGAAAACCAAGTTCCTAGTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

148

Amino Acids

16.67

Weight (kDa)

9.0

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 63 - 144 2.7e-25 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 183, 273
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 45
AgsI TTSAA 2 cut(s) 182, 248
AjnI CCWGG 2 cut(s) 205, 394
AluBI AGCT 3 cut(s) 56, 106, 301
AluI AGCT 3 cut(s) 56, 106, 301
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 2 cut(s) 134, 319
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 212
AsuC2I CCSGG 2 cut(s) 14, 15
AvaI CYCGRG 1 cut(s) 13
BalI TGGCCA 1 cut(s) 321
BbvI GCAGC 1 cut(s) 271
BccI CCATC 1 cut(s) 268
BciT130I CCWGG 2 cut(s) 207, 396
BcnI CCSGG 2 cut(s) 14, 15
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 438
BfuAI ACCTGC 2 cut(s) 183, 273
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 4 cut(s) 14, 15, 207, 396
BmeT110I CYCGRG 1 cut(s) 13
BmrFI CCNGG 4 cut(s) 14, 15, 207, 396
BmsI GCATC 2 cut(s) 337, 380
BpuMI CCSGG 2 cut(s) 14, 15
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 13, 395
BseBI CCWGG 2 cut(s) 207, 396
BseDI CCNNGG 2 cut(s) 13, 395
BseGI GGATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 389
BseXI GCAGC 1 cut(s) 271
BsgI GTGCAG 2 cut(s) 168, 270
BshFI GGCC 2 cut(s) 136, 321
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 2 cut(s) 14, 137
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 2 cut(s) 136, 321
Bso31I GGTCTC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 13
Bsp143I GATC 1 cut(s) 29
BspANI GGCC 2 cut(s) 136, 321
BspCNI CTCAG 1 cut(s) 388
BspMI ACCTGC 2 cut(s) 183, 273
BspPI GGATC 1 cut(s) 24
BspQI GCTCTTC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 13, 395
BssMI GATC 1 cut(s) 29
Bst2UI CCWGG 2 cut(s) 207, 396
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 24, 377
BstNI CCWGG 2 cut(s) 207, 396
BstSCI CCNGG 4 cut(s) 12, 13, 205, 394
BstV1I GCAGC 1 cut(s) 271
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 2 cut(s) 136, 321
BtsCI GGATG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 339
BveI ACCTGC 2 cut(s) 183, 273
Cac8I GCNNGC 1 cut(s) 319
CfoI GCGC 1 cut(s) 212
Cfr9I CCCGGG 1 cut(s) 13
CviJI RGCY 6 cut(s) 56, 106, 136, 170, 301, 321
CviKI_1 RGCY 6 cut(s) 56, 106, 136, 170, 301, 321
DdeI CTNAG 1 cut(s) 375
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 205, 394
FaiI YATR 6 cut(s) 75, 167, 203, 222, 228, 357
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 2 cut(s) 136, 321
HapII CCGG 2 cut(s) 14, 137
HhaI GCGC 1 cut(s) 212
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 1 cut(s) 7
HpaII CCGG 2 cut(s) 14, 137
Hpy188III TCNNGA 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 8 cut(s) 4, 77, 149, 287, 311, 350, 371, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 377
HpyF3I CTNAG 1 cut(s) 375
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 29
LguI GCTCTTC 1 cut(s) 291
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 2 cut(s) 337, 380
MaeI CTAG 1 cut(s) 438
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 1 cut(s) 308
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 29
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 4 cut(s) 45, 177, 312, 387
MluNI TGGCCA 1 cut(s) 321
MnlI CCTC 2 cut(s) 235, 334
Mox20I TGGCCA 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 321
MseI TTAA 2 cut(s) 119, 158
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 2 cut(s) 14, 137
MspR9I CCNGG 4 cut(s) 14, 15, 207, 396
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 2 cut(s) 207, 396
MwoI GCNNNNNNNGC 2 cut(s) 24, 377
NciI CCSGG 2 cut(s) 14, 15
NdeII GATC 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 205, 394
PspGI CCWGG 2 cut(s) 205, 394
PsuI RGATCY 1 cut(s) 29
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 119, 158
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 29
ScrFI CCNGG 4 cut(s) 14, 15, 207, 396
SfaNI GCATC 2 cut(s) 337, 380
SmaI CCCGGG 1 cut(s) 15
Sse9I AATT 4 cut(s) 45, 177, 312, 387
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 4 cut(s) 12, 13, 205, 394
TaaI ACNGT 1 cut(s) 334
TasI AATT 4 cut(s) 45, 177, 312, 387
Tru1I TTAA 2 cut(s) 119, 158
Tru9I TTAA 2 cut(s) 119, 158
TscAI CASTG 1 cut(s) 339
TseI GCWGC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 154, 309
TspGWI ACGGA 1 cut(s) 286
TspMI CCCGGG 1 cut(s) 13
TspRI CASTG 1 cut(s) 339
XapI RAATTY 1 cut(s) 45
XmaI CCCGGG 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.