FvH4_2g09061

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000659
Physical Location & Seq
Forward (+)
7986565 .. 7988423
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09061.t1

Sequence Viewer

Length: 1155 bp
ATGGCAAAAACCAACAACTTCGGCTTCTGTTCTTTACTTCCCTACTTATGTTTTGTTGCGTTCCTCTTCATTCCAGCCAAAGCTGCTGTCAAGTCATACCAATTCGACATACAAGTGAAGAATGTGAGCAGGTTGTGCCATTCTAAGCCAATTGTTACAGTAAATGGGATGTTCCCAGGACCTACAGTCTATGCTAGAGAAGGAGATACACTTCTAATTAATGTTACCAACCATGCACAATATAACATGTCCATTCATTGGCATGGACTAAAGCAATACAGGAATGGCTGGGCAGATGGACCTGCTTACATAACGCAATGTCCAATCAAGACAGGAAGCAGTTATATCTACAATATGACAGTCACCGGGCAAAGAGGAACTCTATGGTGGCATGCTCACATCTTTTGGCTTAGAGCCACTGTCTACGGAGCAATTGTCGTTTTGCCAAAACAAGGGACTGTCTTTCCTTTTCCTCGGCCTTACAGAGAAGCTAACCTCATCTTAGGAGAATGGTGGAATAACGATGTGGAAGAAGTTGTTAAGCAGGGGAACAGACTCGGATTGCCTCCAAATATGTCAGATGCACATACCATTAATGGGAAGCCAGGGCCTCTCTTTCCATGCTCGGAGAAACATACCTTTGCAATGGAGGTTGAACAAAGAAAGACGTACCTGCTACGGATCATCAATGCTGCACTCAATGACGAGCTATTCTTTGCCATAGCCGGCCATAACTTGACAGTGGTCGAGATTGATGCAGTCTATACTAAACCATTTACATCGCAGGCAATACTAATAGCACCAGGCCAGACCACAAATGTTCTTGTTCAGGCAAACCAAGTCCCTAGTAGATACTTCATGGCTGCAAGGCCATTCATGAATGCACCTGTTTCCATAGACAATAAGACAGCCACTGCAATCCTTCAATACAAAGGCATCCCTAATTCTGTTCTGCCAGTTCTCTCCCAACTTCCAGCACTCAATGATACAGCTTTTGCGCTGAGCTATGCTGCGAAGCTGAGAAGCCTAAACACACCAAAGTACCCAGCGAATGTACCACTTAAAGTGGATAGACAGCTTTTCTACACAATTGGTTTGGGAATCAACCAATGCACTACTTGCTTGAATGGAATGTTGGAAATAAAGTGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

385

Amino Acids

42.92

Weight (kDa)

9.32

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 37 - 151 8.8e-42 Multicopper oxidase
Cu-oxidase PF00394 166 - 312 1.6e-43 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 120, 310, 681
AccB7I CCANNNNNTGG 1 cut(s) 258
AccI GTMKAC 1 cut(s) 423
AclWI GGATC 1 cut(s) 689
AcoI YGGCCR 1 cut(s) 727
AfaI GTAC 3 cut(s) 671, 1043, 1056
AfiI CCNNNNNNNGG 3 cut(s) 258, 452, 597
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 656, 926, 1126
AhdI GACNNNNNGTC 1 cut(s) 185
AjnI CCWGG 3 cut(s) 175, 604, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 1118, 1150
AluBI AGCT 7 cut(s) 83, 491, 709, 992, 1005, 1018, 1078
AluI AGCT 7 cut(s) 83, 491, 709, 992, 1005, 1018, 1078
AlwI GGATC 1 cut(s) 689
AlwNI CAGNNNCTG 1 cut(s) 914
AoxI GGCC 5 cut(s) 476, 608, 727, 805, 869
ApeKI GCWGC 4 cut(s) 83, 692, 863, 1010
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AseI ATTAAT 2 cut(s) 219, 594
AspLEI GCGC 1 cut(s) 1000
AspS9I GGNCC 3 cut(s) 179, 299, 608
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 1 cut(s) 355
AvaII GGWCC 2 cut(s) 179, 299
BaeI ACNNNNGTAYC 2 cut(s) 1025, 1058
BbvI GCAGC 4 cut(s) 70, 679, 850, 997
BccI CCATC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 737, 771
BciT130I CCWGG 3 cut(s) 177, 606, 804
BcnI CCSGG 1 cut(s) 367
BfaI CTAG 2 cut(s) 195, 846
BfmI CTRYAG 1 cut(s) 183
BfuAI ACCTGC 3 cut(s) 120, 310, 681
BisI GCNGC 4 cut(s) 84, 693, 864, 1011
BlpI GCTNAGC 1 cut(s) 1001
BlsI GCNGC 4 cut(s) 85, 694, 865, 1012
Bme1390I CCNGG 4 cut(s) 177, 367, 606, 804
Bme18I GGWCC 2 cut(s) 179, 299
BmeRI GACNNNNNGTC 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 179, 299, 608
BmrFI CCNGG 4 cut(s) 177, 367, 606, 804
BmsI GCATC 3 cut(s) 571, 745, 945
BoxI GACNNNNGTC 1 cut(s) 743
Bpu1102I GCTNAGC 1 cut(s) 1001
BpuMI CCSGG 1 cut(s) 367
BsaJI CCNNGG 3 cut(s) 175, 473, 605
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 452, 597
Bse118I RCCGGY 1 cut(s) 725
Bse1I ACTGG 1 cut(s) 956
Bse3DI GCAATG 2 cut(s) 323, 651
BseBI CCWGG 3 cut(s) 177, 606, 804
BseDI CCNNGG 3 cut(s) 175, 473, 605
BseGI GGATG 2 cut(s) 174, 936
BseLI CCNNNNNNNGG 3 cut(s) 258, 452, 597
BseMI GCAATG 2 cut(s) 323, 651
BseMII CTCAG 2 cut(s) 992, 1010
BseNI ACTGG 1 cut(s) 956
BseXI GCAGC 4 cut(s) 70, 679, 850, 997
BseYI CCCAGC 2 cut(s) 288, 1045
BsgI GTGCAG 1 cut(s) 678
BshFI GGCC 5 cut(s) 478, 610, 729, 807, 871
BsiSI CCGG 2 cut(s) 366, 726
BslFI GGGAC 2 cut(s) 469, 827
BslI CCNNNNNNNGG 3 cut(s) 258, 452, 597
BsmFI GGGAC 2 cut(s) 469, 827
BsmI GAATGC 1 cut(s) 886
BsnI GGCC 5 cut(s) 478, 610, 729, 807, 871
Bsp143I GATC 1 cut(s) 681
Bsp1720I GCTNAGC 1 cut(s) 1001
BspANI GGCC 5 cut(s) 478, 610, 729, 807, 871
BspCNI CTCAG 2 cut(s) 993, 1011
BspHI TCATGA 1 cut(s) 876
BspMI ACCTGC 3 cut(s) 120, 310, 681
BspPI GGATC 1 cut(s) 689
BsrDI GCAATG 2 cut(s) 323, 651
BsrFI RCCGGY 1 cut(s) 725
BsrI ACTGG 1 cut(s) 956
BssAI RCCGGY 1 cut(s) 725
BssECI CCNNGG 3 cut(s) 175, 473, 605
BssMI GATC 1 cut(s) 681
Bst2UI CCWGG 3 cut(s) 177, 606, 804
Bst4CI ACNGT 6 cut(s) 160, 187, 361, 421, 460, 742
Bst6I CTCTTC 1 cut(s) 71
BstAPI GCANNNNNTGC 2 cut(s) 135, 1119
BstC8I GCNNGC 3 cut(s) 393, 727, 786
BstDEI CTNAG 5 cut(s) 144, 410, 502, 1001, 1019
BstF5I GGATG 2 cut(s) 174, 936
BstHHI GCGC 1 cut(s) 1000
BstKTI GATC 1 cut(s) 684
BstMBI GATC 1 cut(s) 681
BstMWI GCNNNNNNNGC 3 cut(s) 83, 135, 1119
BstNI CCWGG 3 cut(s) 177, 606, 804
BstNSI RCATGY 2 cut(s) 250, 395
BstPAI GACNNNNGTC 1 cut(s) 743
BstSCI CCNGG 4 cut(s) 175, 365, 604, 802
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 4 cut(s) 70, 679, 850, 997
BsuRI GGCC 5 cut(s) 478, 610, 729, 807, 871
BtgZI GCGATG 1 cut(s) 765
BtsCI GGATG 2 cut(s) 174, 936
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 3 cut(s) 417, 747, 912
BveI ACCTGC 3 cut(s) 120, 310, 681
Cac8I GCNNGC 3 cut(s) 393, 727, 786
CaiI CAGNNNCTG 1 cut(s) 914
CciI TCATGA 1 cut(s) 876
CfoI GCGC 1 cut(s) 1000
Cfr10I RCCGGY 1 cut(s) 725
Cfr13I GGNCC 3 cut(s) 179, 299, 608
Csp6I GTAC 3 cut(s) 670, 1042, 1055
CviAII CATG 7 cut(s) 233, 247, 263, 392, 621, 859, 877
CviQI GTAC 3 cut(s) 670, 1042, 1055
DdeI CTNAG 5 cut(s) 144, 410, 502, 1001, 1019
DpnI GATC 1 cut(s) 683
DpnII GATC 1 cut(s) 681
DriI GACNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 727
Eam1104I CTCTTC 1 cut(s) 71
Eam1105I GACNNNNNGTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 179, 299
EcoO109I RGGNCCY 2 cut(s) 179, 608
EcoRII CCWGG 3 cut(s) 175, 604, 802
FaeI CATG 7 cut(s) 236, 250, 266, 395, 624, 862, 880
FaqI GGGAC 2 cut(s) 469, 827
FatI CATG 7 cut(s) 232, 246, 262, 391, 620, 858, 876
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 4 cut(s) 84, 693, 864, 1011
FokI GGATG 2 cut(s) 181, 923
Fsp4HI GCNGC 4 cut(s) 84, 693, 864, 1011
FspBI CTAG 2 cut(s) 195, 846
GlaI GCGC 1 cut(s) 999
GluI GCNGC 4 cut(s) 84, 693, 864, 1011
GsaI CCCAGC 2 cut(s) 292, 1049
HaeIII GGCC 5 cut(s) 478, 610, 729, 807, 871
HapII CCGG 2 cut(s) 366, 726
HhaI GCGC 1 cut(s) 1000
Hin1II CATG 7 cut(s) 236, 250, 266, 395, 624, 862, 880
Hin6I GCGC 1 cut(s) 998
HinP1I GCGC 1 cut(s) 998
HinfI GANTC 2 cut(s) 555, 1101
HpaII CCGG 2 cut(s) 366, 726
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 424, 1149
Hpy188I TCNGA 3 cut(s) 560, 580, 628
Hpy188III TCNNGA 3 cut(s) 328, 748, 877
Hpy8I GTNNAC 2 cut(s) 424, 1149
HpyAV CCTTC 2 cut(s) 194, 932
HpyCH4III ACNGT 6 cut(s) 160, 187, 361, 421, 460, 742
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 9 cut(s) 236, 584, 644, 695, 758, 866, 884, 917, 1113
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 135, 1119
HpyF3I CTNAG 5 cut(s) 144, 410, 502, 1001, 1019
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 7 cut(s) 236, 250, 266, 395, 624, 862, 880
HspAI GCGC 1 cut(s) 998
KroI GCCGGC 1 cut(s) 725
KroNI GCCGGC 1 cut(s) 727
Kzo9I GATC 1 cut(s) 681
LmnI GCTCC 1 cut(s) 428
Lsp1109I GCAGC 4 cut(s) 70, 679, 850, 997
LweI GCATC 3 cut(s) 571, 745, 945
MaeI CTAG 2 cut(s) 195, 846
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 3 cut(s) 154, 223, 361
MalI GATC 1 cut(s) 683
MboI GATC 1 cut(s) 681
MboII GAAGA 3 cut(s) 58, 130, 542
MfeI CAATTG 3 cut(s) 150, 432, 1089
MluCI AATT 6 cut(s) 101, 150, 216, 432, 943, 1089
MlyI GAGTC 1 cut(s) 549
MmeI TCCRAC 1 cut(s) 1116
MnlI CCTC 7 cut(s) 74, 368, 483, 506, 576, 621, 643
MroNI GCCGGC 1 cut(s) 725
MseI TTAA 5 cut(s) 219, 540, 594, 1062, 1153
MslI CAYNNNNRTG 2 cut(s) 113, 261
MspI CCGG 2 cut(s) 366, 726
MspR9I CCNGG 4 cut(s) 177, 367, 606, 804
MunI CAATTG 3 cut(s) 150, 432, 1089
Mva1269I GAATGC 1 cut(s) 886
MvaI CCWGG 3 cut(s) 177, 606, 804
MwoI GCNNNNNNNGC 3 cut(s) 83, 135, 1119
NaeI GCCGGC 1 cut(s) 727
NciI CCSGG 1 cut(s) 367
NdeII GATC 1 cut(s) 681
NgoMIV GCCGGC 1 cut(s) 725
NlaIII CATG 7 cut(s) 236, 250, 266, 395, 624, 862, 880
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 361
NspI RCATGY 2 cut(s) 250, 395
PaeI GCATGC 1 cut(s) 395
PagI TCATGA 1 cut(s) 876
PciI ACATGT 1 cut(s) 246
PctI GAATGC 1 cut(s) 886
PdiI GCCGGC 1 cut(s) 727
PfeI GAWTC 1 cut(s) 1101
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 4 cut(s) 85, 694, 865, 1012
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
PpuMI RGGWCCY 1 cut(s) 179
PscI ACATGT 1 cut(s) 246
PshAI GACNNNNGTC 1 cut(s) 743
PshBI ATTAAT 2 cut(s) 219, 594
Psp5II RGGWCCY 1 cut(s) 179
Psp6I CCWGG 3 cut(s) 175, 604, 802
PspFI CCCAGC 2 cut(s) 288, 1045
PspGI CCWGG 3 cut(s) 175, 604, 802
PspPI GGNCC 3 cut(s) 179, 299, 608
PspPPI RGGWCCY 1 cut(s) 179
PstNI CAGNNNCTG 1 cut(s) 914
RsaI GTAC 3 cut(s) 671, 1043, 1056
RsaNI GTAC 3 cut(s) 670, 1042, 1055
RseI CAYNNNNRTG 2 cut(s) 113, 261
SaqAI TTAA 5 cut(s) 219, 540, 594, 1062, 1153
SatI GCNGC 4 cut(s) 84, 693, 864, 1011
Sau3AI GATC 1 cut(s) 681
Sau96I GGNCC 3 cut(s) 179, 299, 608
SchI GAGTC 1 cut(s) 549
ScrFI CCNGG 4 cut(s) 177, 367, 606, 804
SfaNI GCATC 3 cut(s) 571, 745, 945
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 2 cut(s) 179, 299
SmiMI CAYNNNNRTG 2 cut(s) 113, 261
SphI GCATGC 1 cut(s) 395
Sse9I AATT 6 cut(s) 101, 150, 216, 432, 943, 1089
SspMI CTAG 2 cut(s) 195, 846
StyD4I CCNGG 4 cut(s) 175, 365, 604, 802
TaaI ACNGT 6 cut(s) 160, 187, 361, 421, 460, 742
TaiI ACGT 1 cut(s) 671
TaqI TCGA 2 cut(s) 105, 747
TasI AATT 6 cut(s) 101, 150, 216, 432, 943, 1089
TfiI GAWTC 1 cut(s) 1101
Tru1I TTAA 5 cut(s) 219, 540, 594, 1062, 1153
Tru9I TTAA 5 cut(s) 219, 540, 594, 1062, 1153
TscAI CASTG 3 cut(s) 424, 747, 919
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 4 cut(s) 83, 692, 863, 1010
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 5 cut(s) 58, 245, 847, 865, 893
TspGWI ACGGA 2 cut(s) 441, 694
TspRI CASTG 3 cut(s) 424, 747, 919
Van91I CCANNNNNTGG 1 cut(s) 258
VpaK11BI GGWCC 2 cut(s) 179, 299
VspI ATTAAT 2 cut(s) 219, 594
XceI RCATGY 2 cut(s) 250, 395
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 2 cut(s) 195, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.