RLG00000014269

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000659
Physical Location & Seq
Reverse (-)
50183074 .. 50209349
26276 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014269

Sequence Viewer

Length: 909 bp
ATGGCAAAAAGCAACAACTTCTGCTGGGCATTCTTACGTCTCTGCTCATGTTCAGAGGCGTTCTTTTTCATTCCAGCCAAAGCTGCATTGAAGACCTACCAGTTCGATATTCAAGTGAAGAATGTGAGCAGGTTGTGCCATTCTAAGCCAATTGTTACAGTTGATGGGATGTTCCCTGGACCTACAATCTATGCTAGAGAAGGCAATCTATGGTTGGGAAGGCAAAGAGGAACTCTATGGTGGCATGCTCATATATTTTGGCTGAGAGCCACTGTCTATGGAGCAATTGTCATCCTGCCCAAACAGGGGACTGGCTTTCCTTTTCCTCAGCCTTACAGAGAAACTAATCTCGTGTTAGATACCTTTGCAATGGAGGTTGAACAGCAAAAGACTTACTTGCTACAGATCATCAATGTTGCACTCAATGACGAGCTATTCTTTACAATTGCTGGCCACAATTTGACAGTACACAACAAAACTGCCACTGCAATCCTAAAATATAAAGGAATCCCTAATTCTGTGCTGCCAGTCCTTTCCCAACTTCCAGCACTCAATGACACAGCTTTTGTACTGAGCTACAACGCCAAGCTGAGAAGCCTAAACACAGCAAAGTACCCAGCAAATGTACCTCTTAAACTCACTGCTTCTTTGAACAACATCACATTCGTGATGCCCCAAGTTGGACTGCTTCAAGCTCATTACTTCAACACTAAGGGAGTATTTTCCACAGATTTCCCTGACCGCCCACCAACACCGTTCAATTACACTAGTGCACCACTCACTGCCAACCTTGGGACTAAACTGGGTACTTGGCTAAGCAAGATTGCCTTTAATTCGACAGTAGAGTTGGTGCTACAAGACACCAATCTTCTCACCGTGGAATCCCATCCAATCCACCTTCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

303

Amino Acids

33.82

Weight (kDa)

9.39

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 119 - 157 2.5e-09 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AciI CCGC 1 cut(s) 742
AcoI YGGCCR 1 cut(s) 451
AfaI GTAC 5 cut(s) 468, 570, 614, 627, 808
AfiI CCNNNNNNNGG 4 cut(s) 305, 306, 680, 792
AgsI TTSAA 7 cut(s) 91, 113, 380, 652, 692, 706, 760
AhlI ACTAGT 1 cut(s) 767
AjnI CCWGG 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 665
AluBI AGCT 6 cut(s) 83, 433, 563, 576, 589, 695
AluI AGCT 6 cut(s) 83, 433, 563, 576, 589, 695
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 1 cut(s) 44
Alw44I GTGCAC 1 cut(s) 771
AoxI GGCC 1 cut(s) 451
ApaLI GTGCAC 1 cut(s) 771
ApeKI GCWGC 2 cut(s) 83, 523
ArsI GACNNNNNNTTYG 2 cut(s) 548, 580
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 865
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 775
BalI TGGCCA 1 cut(s) 453
BauI CACGAG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 775
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 2 cut(s) 70, 510
BccI CCATC 2 cut(s) 158, 894
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 44
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 2 cut(s) 195, 768
BfmI CTRYAG 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 120
BisI GCNGC 2 cut(s) 84, 524
BlpI GCTNAGC 1 cut(s) 815
BlsI GCNGC 2 cut(s) 85, 525
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 812
BmsI GCATC 1 cut(s) 660
BmuI ACTGGG 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 327
Bpu1102I GCTNAGC 1 cut(s) 815
BsaJI CCNNGG 3 cut(s) 175, 790, 876
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 306, 680, 792
Bse1I ACTGG 4 cut(s) 100, 316, 527, 807
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 175, 790, 876
BseGI GGATG 3 cut(s) 174, 291, 886
BseLI CCNNNNNNNGG 4 cut(s) 305, 306, 680, 792
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 4 cut(s) 254, 341, 563, 581
BseNI ACTGG 4 cut(s) 100, 316, 527, 807
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 2 cut(s) 70, 510
BseYI CCCAGC 2 cut(s) 24, 616
BshFI GGCC 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 775
BslFI GGGAC 2 cut(s) 322, 808
BslI CCNNNNNNNGG 4 cut(s) 305, 306, 680, 792
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 2 cut(s) 322, 808
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 1 cut(s) 453
Bsp1286I GDGCHC 1 cut(s) 775
Bsp143I GATC 1 cut(s) 405
Bsp1720I GCTNAGC 1 cut(s) 815
BspACI CCGC 1 cut(s) 742
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 4 cut(s) 255, 340, 564, 582
BspMI ACCTGC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 4 cut(s) 100, 316, 527, 807
BssECI CCNNGG 3 cut(s) 175, 790, 876
BssMI GATC 1 cut(s) 405
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 790
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 6 cut(s) 160, 274, 466, 756, 841, 877
BstAPI GCANNNNNTGC 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 246, 451
BstDEI CTNAG 7 cut(s) 144, 263, 327, 572, 590, 711, 815
BstDSI CCRYGG 1 cut(s) 876
BstF5I GGATG 3 cut(s) 174, 291, 886
BstKTI GATC 1 cut(s) 408
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 405
BstMWI GCNNNNNNNGC 2 cut(s) 83, 135
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 775
BstV1I GCAGC 2 cut(s) 70, 510
BstV2I GAAGAC 1 cut(s) 98
BstXI CCANNNNNNTGG 1 cut(s) 902
BsuRI GGCC 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 3 cut(s) 174, 291, 886
BtsI GCAGTG 3 cut(s) 483, 639, 780
BtsIMutI CAGTG 4 cut(s) 270, 483, 639, 780
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 246, 451
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 5 cut(s) 467, 569, 613, 626, 807
CviAII CATG 3 cut(s) 48, 245, 902
CviQI GTAC 5 cut(s) 467, 569, 613, 626, 807
DdeI CTNAG 7 cut(s) 144, 263, 327, 572, 590, 711, 815
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 790
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 3 cut(s) 51, 248, 905
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 812, 844
FaqI GGGAC 2 cut(s) 322, 808
FatI CATG 3 cut(s) 47, 244, 901
Fnu4HI GCNGC 2 cut(s) 84, 524
FokI GGATG 3 cut(s) 181, 278, 873
Fsp4HI GCNGC 2 cut(s) 84, 524
FspBI CTAG 2 cut(s) 195, 768
GluI GCNGC 2 cut(s) 84, 524
GsaI CCCAGC 2 cut(s) 28, 620
HaeIII GGCC 1 cut(s) 453
Hin1II CATG 3 cut(s) 51, 248, 905
HinfI GANTC 2 cut(s) 507, 881
HphI GGTGA 1 cut(s) 865
Hpy166II GTNNAC 2 cut(s) 469, 773
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 1 cut(s) 667
Hpy8I GTNNAC 2 cut(s) 469, 773
HpyAV CCTTC 3 cut(s) 194, 213, 908
HpyCH4III ACNGT 6 cut(s) 160, 274, 466, 756, 841, 877
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 5 cut(s) 86, 368, 419, 488, 773
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 135
HpyF3I CTNAG 7 cut(s) 144, 263, 327, 572, 590, 711, 815
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 3 cut(s) 51, 248, 905
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 281
Lsp1109I GCAGC 2 cut(s) 70, 510
LweI GCATC 1 cut(s) 660
MaeI CTAG 2 cut(s) 195, 768
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 154
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 3 cut(s) 103, 130, 860
MfeI CAATTG 3 cut(s) 150, 285, 444
MhlI GDGCHC 1 cut(s) 775
MlsI TGGCCA 1 cut(s) 453
MluCI AATT 7 cut(s) 150, 285, 444, 457, 514, 760, 832
MluNI TGGCCA 1 cut(s) 453
MmeI TCCRAC 1 cut(s) 661
MnlI CCTC 5 cut(s) 49, 221, 336, 367, 639
Mox20I TGGCCA 1 cut(s) 453
MscI TGGCCA 1 cut(s) 453
MseI TTAA 3 cut(s) 633, 831, 907
MslI CAYNNNNRTG 2 cut(s) 665, 900
Msp20I TGGCCA 1 cut(s) 453
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 3 cut(s) 150, 285, 444
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 83, 135
NdeII GATC 1 cut(s) 405
NlaIII CATG 3 cut(s) 51, 248, 905
NspI RCATGY 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 665
PaeI GCATGC 1 cut(s) 248
PctI GAATGC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 507, 881
PkrI GCNGC 2 cut(s) 85, 525
Psp6I CCWGG 1 cut(s) 175
PspFI CCCAGC 2 cut(s) 24, 616
PspGI CCWGG 1 cut(s) 175
PspPI GGNCC 1 cut(s) 179
RsaI GTAC 5 cut(s) 468, 570, 614, 627, 808
RsaNI GTAC 5 cut(s) 467, 569, 613, 626, 807
RseI CAYNNNNRTG 2 cut(s) 665, 900
SaqAI TTAA 3 cut(s) 633, 831, 907
SatI GCNGC 2 cut(s) 84, 524
Sau3AI GATC 1 cut(s) 405
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 1 cut(s) 775
SfaNI GCATC 1 cut(s) 660
SfcI CTRYAG 1 cut(s) 401
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 665, 900
SpeI ACTAGT 1 cut(s) 767
SphI GCATGC 1 cut(s) 248
Sse9I AATT 7 cut(s) 150, 285, 444, 457, 514, 760, 832
SsiI CCGC 1 cut(s) 742
SspMI CTAG 2 cut(s) 195, 768
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 790
TaaI ACNGT 6 cut(s) 160, 274, 466, 756, 841, 877
TaiI ACGT 1 cut(s) 40
TaqI TCGA 2 cut(s) 105, 836
TasI AATT 7 cut(s) 150, 285, 444, 457, 514, 760, 832
TatI WGTACW 2 cut(s) 466, 568
TfiI GAWTC 2 cut(s) 507, 881
Tru1I TTAA 3 cut(s) 633, 831, 907
Tru9I TTAA 3 cut(s) 633, 831, 907
TscAI CASTG 4 cut(s) 277, 490, 646, 787
TseI GCWGC 2 cut(s) 83, 523
TspDTI ATGAA 2 cut(s) 58, 890
TspRI CASTG 4 cut(s) 277, 490, 646, 787
VneI GTGCAC 1 cut(s) 771
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 248
XspI CTAG 2 cut(s) 195, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.