Rh6CG123100

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000659
Physical Location & Seq
Forward (+)
14572211 .. 14577508
5298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG123100.1

Sequence Viewer

Length: 618 bp
ATGAAGACCTACCAGTTCGATATATTTACCTATATATCTAATTGCAATGTTTTTTCTGAAAACAGCATAGGAGAATGGTGGAATAACGATGTTGAAGAGATTGTTAAACAAGGGAACAGACTAGGGTTGCCTCCAAATATGTCAGATGCACATACCATTAATGGGAAGCCAGGGCCGCTCTTTCCATGTTCTGAGAAACATACCTTTGCAATGGAGGTTGAACAGGGAAAGACTTACCTGCTACGGATCGTCAATGCTGCACTCAATGACGAGCTATTCTTTGCAATTGTTGGCCACAACTTGACAGTGGTAGAGGTTGATGCAGTCTATACATCTCAGGCAATACTAATTGCACCAGGCCAGACCACAAATGTTCTTGTTCGGGCAAACCAAGTCCTTAGCAGATACTTCATGGCTGCAAGGTCATTCATGGATGCACCTCTTTCCATAGGCAACAAAACTGCCACTGCAATCCTACAATATAAAGGCATCCCTAATTTTGTGGTGCCAGTCCTTTCCCAACTTCCAGCACTCAATGACACAGCTTTTGTACTGAGCTACAATGCCAAGCTGAGAAGCCTAAACACAGAAAAGTACCCAACAAATAAAATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

205

Amino Acids

22.84

Weight (kDa)

6.29

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 23 - 163 3.6e-37 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 505
AccBSI CCGCTC 1 cut(s) 178
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 1 cut(s) 292
AfaI GTAC 2 cut(s) 552, 596
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 2 cut(s) 95, 221
AjnI CCWGG 2 cut(s) 169, 355
AluBI AGCT 4 cut(s) 274, 545, 558, 571
AluI AGCT 4 cut(s) 274, 545, 558, 571
AlwI GGATC 1 cut(s) 254
AoxI GGCC 3 cut(s) 173, 292, 358
ApeKI GCWGC 2 cut(s) 257, 416
ArsI GACNNNNNNTTYG 2 cut(s) 530, 562
AseI ATTAAT 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 294
BanI GGYRCC 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 244, 403
BciT130I CCWGG 2 cut(s) 171, 357
BfaI CTAG 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 246
BisI GCNGC 3 cut(s) 176, 258, 417
BlsI GCNGC 3 cut(s) 177, 259, 418
Bme1390I CCNGG 2 cut(s) 171, 357
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 2 cut(s) 171, 357
BmsI GCATC 4 cut(s) 136, 310, 424, 498
BpiI GAAGAC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 2 cut(s) 13, 509
Bse3DI GCAATG 2 cut(s) 52, 216
BseBI CCWGG 2 cut(s) 171, 357
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 439, 489
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 2 cut(s) 52, 216
BseMII CTCAG 4 cut(s) 183, 350, 545, 563
BseNI ACTGG 2 cut(s) 13, 509
BseXI GCAGC 2 cut(s) 244, 403
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 3 cut(s) 175, 294, 360
BshNI GGYRCC 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 162
BsnI GGCC 3 cut(s) 175, 294, 360
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 1 cut(s) 176
BspANI GGCC 3 cut(s) 175, 294, 360
BspCNI CTCAG 4 cut(s) 184, 349, 546, 564
BspLI GGNNCC 1 cut(s) 507
BspMI ACCTGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 254
BspT107I GGYRCC 1 cut(s) 505
BsrBI CCGCTC 1 cut(s) 178
BsrDI GCAATG 2 cut(s) 52, 216
BsrI ACTGG 2 cut(s) 13, 509
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 171, 357
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 90
BstDEI CTNAG 5 cut(s) 192, 336, 398, 554, 572
BstF5I GGATG 2 cut(s) 439, 489
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 2 cut(s) 171, 357
BstSCI CCNGG 2 cut(s) 169, 355
BstV1I GCAGC 2 cut(s) 244, 403
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 3 cut(s) 175, 294, 360
BtsCI GGATG 2 cut(s) 439, 489
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 312, 465
BveI ACCTGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 2 cut(s) 551, 595
CviAII CATG 3 cut(s) 186, 412, 430
CviQI GTAC 2 cut(s) 551, 595
DdeI CTNAG 5 cut(s) 192, 336, 398, 554, 572
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 169, 355
FaeI CATG 3 cut(s) 189, 415, 433
FatI CATG 3 cut(s) 185, 411, 429
Fnu4HI GCNGC 3 cut(s) 176, 258, 417
FokI GGATG 2 cut(s) 446, 476
Fsp4HI GCNGC 3 cut(s) 176, 258, 417
FspBI CTAG 1 cut(s) 122
GluI GCNGC 3 cut(s) 176, 258, 417
HaeIII GGCC 3 cut(s) 175, 294, 360
Hin1II CATG 3 cut(s) 189, 415, 433
Hpy188I TCNGA 3 cut(s) 58, 145, 193
HpyCH4III ACNGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 5 cut(s) 192, 336, 398, 554, 572
Hsp92II CATG 3 cut(s) 189, 415, 433
Kzo9I GATC 1 cut(s) 246
Lsp1109I GCAGC 2 cut(s) 244, 403
LweI GCATC 4 cut(s) 136, 310, 424, 498
MaeI CTAG 1 cut(s) 122
MalI GATC 1 cut(s) 248
MbiI CCGCTC 1 cut(s) 178
MboI GATC 1 cut(s) 246
MboII GAAGA 2 cut(s) 16, 107
MfeI CAATTG 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 5 cut(s) 40, 285, 348, 496, 613
MluNI TGGCCA 1 cut(s) 294
MnlI CCTC 4 cut(s) 141, 208, 307, 450
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 2 cut(s) 105, 159
Msp20I TGGCCA 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 171, 357
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 2 cut(s) 171, 357
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 1 cut(s) 246
NlaIII CATG 3 cut(s) 189, 415, 433
NlaIV GGNNCC 1 cut(s) 507
PkrI GCNGC 3 cut(s) 177, 259, 418
PshBI ATTAAT 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 169, 355
PspGI CCWGG 2 cut(s) 169, 355
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 1 cut(s) 173
RsaI GTAC 2 cut(s) 552, 596
RsaNI GTAC 2 cut(s) 551, 595
SaqAI TTAA 2 cut(s) 105, 159
SatI GCNGC 3 cut(s) 176, 258, 417
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 171, 357
SfaNI GCATC 4 cut(s) 136, 310, 424, 498
Sse9I AATT 5 cut(s) 40, 285, 348, 496, 613
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 169, 355
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 18
TasI AATT 5 cut(s) 40, 285, 348, 496, 613
TatI WGTACW 1 cut(s) 550
TauI GCSGC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 105, 159
Tru9I TTAA 2 cut(s) 105, 159
TscAI CASTG 2 cut(s) 312, 472
TseI GCWGC 2 cut(s) 257, 416
TspDTI ATGAA 3 cut(s) 17, 400, 418
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 2 cut(s) 312, 472
VspI ATTAAT 1 cut(s) 159
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.