Rh2BG150700

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000659
Physical Location & Seq
Reverse (-)
12883497 .. 12891647
8151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG150700.1

Sequence Viewer

Length: 663 bp
ATGGGTTGCGACACCACCGCCTTCGCCGCCGCCACGTCAGCACCGGAACCAGAGCTTGGATCAGAGCGACGAGGAGAAGAAGAGGAGCGAGTTTCGTTTTTTTTTTTTTTGGCTCGCTCGAAAAACGGATCTCCAGGCGCTCTTTTGCATGGATTGAAACAGTACCGAAATGGTTGGGCGGATGGACCGGCATATGTGACACAGTGTCCTATCCAGACTGGGAATAGCTACACCTATGCCTTCAATGTAACAGGCCAAAGAGGAACTTTGTGGTGGCATGCACATATTCTTTGGCTAAGGGCCACTGTCTATGGCGCAATTGTCATCATGCCTAAACAAGGCACCCCATTTCCTTTTCCACAGCCATATAGGGAAGCCGAAATTGTACTAGGAGAATGGTGGAATGTGGATGTCGAAGAAGTTGTCAAGCAAGGAAACAACATGGGCTTGCCGCCAAATTCCTCAGATGCTCACACCATCAATGGCAAGCCAGGGCCATTGTTTCCATGCTCCGAGAAACTGCATAAGCTTTTCCTTGTTTGGATGTCTAGGCGTTTGGTTCTTGCACTGTCATTTGGAGCTTCATACCGGATGGGGATTGAAAACGGCATTTGTTGTGGAAGATGGACCAGGCGCGTCTCAATCTGTTCTGCCTCCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

220

Amino Acids

24.43

Weight (kDa)

8.55

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 49 - 113 2.8e-22 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AccB7I CCANNNNNTGG 1 cut(s) 56
AccII CGCG 1 cut(s) 636
AciI CCGC 6 cut(s) 18, 27, 30, 179, 452, 657
AclWI GGATC 2 cut(s) 67, 136
AcsI RAATTY 1 cut(s) 457
AfaI GTAC 2 cut(s) 164, 387
AfiI CCNNNNNNNGG 2 cut(s) 56, 338
AgsI TTSAA 3 cut(s) 157, 244, 602
AhdI GACNNNNNGTC 1 cut(s) 204
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 3 cut(s) 133, 490, 629
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 4 cut(s) 55, 228, 529, 581
AluI AGCT 4 cut(s) 55, 228, 529, 581
Alw26I GTCTC 1 cut(s) 643
AlwI GGATC 2 cut(s) 67, 136
AoxI GGCC 3 cut(s) 253, 300, 494
ApoI RAATTY 1 cut(s) 457
ArsI GACNNNNNNTTYG 2 cut(s) 408, 440
AspLEI GCGC 3 cut(s) 140, 317, 636
AspS9I GGNCC 4 cut(s) 185, 300, 494, 627
AvaII GGWCC 2 cut(s) 185, 627
BanI GGYRCC 1 cut(s) 341
BccI CCATC 4 cut(s) 176, 485, 586, 618
BceAI ACGGC 1 cut(s) 622
BciT130I CCWGG 3 cut(s) 135, 492, 631
BcoDI GTCTC 1 cut(s) 643
BfaI CTAG 2 cut(s) 389, 549
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 3 cut(s) 27, 30, 452
BlsI GCNGC 3 cut(s) 28, 31, 453
Bme1390I CCNGG 3 cut(s) 135, 492, 631
Bme18I GGWCC 2 cut(s) 185, 627
BmeRI GACNNNNNGTC 1 cut(s) 204
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 4 cut(s) 185, 300, 494, 627
BmiI GGNNCC 2 cut(s) 48, 343
BmrFI CCNGG 3 cut(s) 135, 492, 631
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 457
BmuI ACTGGG 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 491
BsaWI WCCGGW 2 cut(s) 43, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 338
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 3 cut(s) 135, 492, 631
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 4 cut(s) 187, 415, 549, 597
BseLI CCNNNNNNNGG 2 cut(s) 56, 338
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 87, 98
Bsh1236I CGCG 1 cut(s) 636
BshFI GGCC 3 cut(s) 255, 302, 496
BshNI GGYRCC 1 cut(s) 341
BsiSI CCGG 3 cut(s) 44, 188, 589
BslI CCNNNNNNNGG 2 cut(s) 56, 338
BsmAI GTCTC 1 cut(s) 643
BsmBI CGTCTC 1 cut(s) 643
BsnI GGCC 3 cut(s) 255, 302, 496
Bsp143I GATC 2 cut(s) 59, 128
BspACI CCGC 6 cut(s) 18, 27, 30, 179, 452, 657
BspANI GGCC 3 cut(s) 255, 302, 496
BspCNI CTCAG 1 cut(s) 476
BspFNI CGCG 1 cut(s) 636
BspLI GGNNCC 2 cut(s) 48, 343
BspPI GGATC 2 cut(s) 67, 136
BspT107I GGYRCC 1 cut(s) 341
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 2 cut(s) 59, 128
Bst2UI CCWGG 3 cut(s) 135, 492, 631
Bst4CI ACNGT 4 cut(s) 162, 204, 307, 570
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 4 cut(s) 115, 279, 449, 488
BstDEI CTNAG 2 cut(s) 296, 463
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 4 cut(s) 187, 415, 549, 597
BstFNI CGCG 1 cut(s) 636
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 3 cut(s) 140, 317, 636
BstKTI GATC 2 cut(s) 62, 131
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 2 cut(s) 59, 128
BstMWI GCNNNNNNNGC 2 cut(s) 26, 38
BstNI CCWGG 3 cut(s) 135, 492, 631
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 3 cut(s) 133, 490, 629
BstUI CGCG 1 cut(s) 636
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 3 cut(s) 255, 302, 496
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 4 cut(s) 187, 415, 549, 597
BtsIMutI CAGTG 3 cut(s) 209, 303, 566
Cac8I GCNNGC 4 cut(s) 115, 279, 449, 488
CfoI GCGC 3 cut(s) 140, 317, 636
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 4 cut(s) 185, 300, 494, 627
CseI GACGC 1 cut(s) 625
Csp6I GTAC 2 cut(s) 163, 386
CviAII CATG 5 cut(s) 149, 278, 328, 442, 507
CviQI GTAC 2 cut(s) 163, 386
DdeI CTNAG 2 cut(s) 296, 463
DpnI GATC 2 cut(s) 61, 130
DpnII GATC 2 cut(s) 59, 128
DriI GACNNNNNGTC 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 75
Eam1105I GACNNNNNGTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 75
EciI GGCGGA 2 cut(s) 194, 646
Eco47I GGWCC 2 cut(s) 185, 627
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoRII CCWGG 3 cut(s) 133, 490, 629
Esp3I CGTCTC 1 cut(s) 643
FaeI CATG 5 cut(s) 152, 281, 331, 445, 510
FalI AAGNNNNNCTT 2 cut(s) 250, 282
FatI CATG 5 cut(s) 148, 277, 327, 441, 506
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 27, 30, 452
FokI GGATG 4 cut(s) 194, 422, 556, 604
Fsp4HI GCNGC 3 cut(s) 27, 30, 452
FspBI CTAG 2 cut(s) 389, 549
GlaI GCGC 3 cut(s) 139, 316, 635
GluI GCNGC 3 cut(s) 27, 30, 452
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 3 cut(s) 255, 302, 496
HapII CCGG 3 cut(s) 44, 188, 589
HgaI GACGC 1 cut(s) 625
HhaI GCGC 3 cut(s) 140, 317, 636
Hin1II CATG 5 cut(s) 152, 281, 331, 445, 510
Hin6I GCGC 3 cut(s) 138, 315, 634
HinP1I GCGC 3 cut(s) 138, 315, 634
HindIII AAGCTT 1 cut(s) 527
HpaII CCGG 3 cut(s) 44, 188, 589
Hpy188I TCNGA 3 cut(s) 64, 466, 514
Hpy188III TCNNGA 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 31, 250
HpyCH4III ACNGT 4 cut(s) 162, 204, 307, 570
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 4 cut(s) 148, 281, 523, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 38
HpyF3I CTNAG 2 cut(s) 296, 463
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 5 cut(s) 152, 281, 331, 445, 510
HspAI GCGC 3 cut(s) 138, 315, 634
Kzo9I GATC 2 cut(s) 59, 128
LmnI GCTCC 3 cut(s) 85, 515, 578
LweI GCATC 1 cut(s) 457
MaeI CTAG 2 cut(s) 389, 549
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 2 cut(s) 196, 247
MalI GATC 2 cut(s) 61, 130
MboI GATC 2 cut(s) 59, 128
MboII GAAGA 4 cut(s) 89, 92, 428, 633
MfeI CAATTG 1 cut(s) 318
MflI RGATCY 1 cut(s) 128
MluCI AATT 3 cut(s) 318, 381, 457
MnlI CCTC 4 cut(s) 65, 76, 254, 472
MspI CCGG 3 cut(s) 44, 188, 589
MspR9I CCNGG 3 cut(s) 135, 492, 631
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 3 cut(s) 135, 492, 631
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 2 cut(s) 26, 38
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 59, 128
NlaIII CATG 5 cut(s) 152, 281, 331, 445, 510
NlaIV GGNNCC 2 cut(s) 48, 343
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 56
PkrI GCNGC 3 cut(s) 28, 31, 453
Psp6I CCWGG 3 cut(s) 133, 490, 629
PspGI CCWGG 3 cut(s) 133, 490, 629
PspN4I GGNNCC 2 cut(s) 48, 343
PspPI GGNCC 4 cut(s) 185, 300, 494, 627
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 2 cut(s) 164, 387
RsaNI GTAC 2 cut(s) 163, 386
SatI GCNGC 3 cut(s) 27, 30, 452
Sau3AI GATC 2 cut(s) 59, 128
Sau96I GGNCC 4 cut(s) 185, 300, 494, 627
ScrFI CCNGG 3 cut(s) 135, 492, 631
SetI ASST 6 cut(s) 38, 57, 230, 236, 531, 583
SfaNI GCATC 1 cut(s) 457
SinI GGWCC 2 cut(s) 185, 627
SphI GCATGC 1 cut(s) 281
Sse9I AATT 3 cut(s) 318, 381, 457
SsiI CCGC 6 cut(s) 18, 27, 30, 179, 452, 657
SspMI CTAG 2 cut(s) 389, 549
StyD4I CCNGG 3 cut(s) 133, 490, 629
TaaI ACNGT 4 cut(s) 162, 204, 307, 570
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 119, 414
TasI AATT 3 cut(s) 318, 381, 457
TatI WGTACW 1 cut(s) 385
TauI GCSGC 3 cut(s) 29, 32, 454
TscAI CASTG 3 cut(s) 209, 310, 573
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 573
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 3 cut(s) 209, 310, 573
Van91I CCANNNNNTGG 1 cut(s) 56
VpaK11BI GGWCC 2 cut(s) 185, 627
XagI CCTNNNNNAGG 1 cut(s) 336
XapI RAATTY 1 cut(s) 457
XceI RCATGY 1 cut(s) 281
XspI CTAG 2 cut(s) 389, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.