Rmu_sc0009807.1_g000001

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009807.1
OG0000659
Physical Location & Seq
Forward (+)
362 .. 1647
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009807.1_g000001.1.cds

Sequence Viewer

Length: 726 bp
atggcaaaaagcaacaacttctgctgggcattcttacgtctcttctcatgttcagttgcgttctttttcattccagccaaagctgcattgaagacctaccagttcaatattcaagtgaagaatgtgagcaggttgtgccattctaagccaattgttacagttaatgggatgttccctggacctacaatctatgctagagaaggcaatacacttctagttaatgttaccaaccatgcacagtataacatgtcaattcattggcatggtctaaggcaatattatagaaatgggtgggcagatggacctgcttatataacacaatgtccgatattcaagactggaaacttttacacctacaatatgacaatcatagggcaaataggaactctatggtggaatgctcacatattttggctgagaaccactgtctatggagcaattgtcatcctgcccacacaggggactggctttccttttcctcagccttacagagaaactaatctcatgttagggaacagactgggattgcctccgaatatgtcagatgcacataccattaatgggaagccagggccgctcttcccatgttctgatgaaaaacatacctttgcaatggaggttgaacagcaaaagacttacctgctacggatcatcaatgctgcactcaatgacgagctattctttgcaattgctggccacaatttgatagtacgtggtagaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

241

Amino Acids

27.36

Weight (kDa)

9.53

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 120, 313, 648
AccBSI CCGCTC 1 cut(s) 577
AciI CCGC 1 cut(s) 575
AclWI GGATC 1 cut(s) 656
AcoI YGGCCR 1 cut(s) 694
AfaI GTAC 1 cut(s) 711
AfiI CCNNNNNNNGG 3 cut(s) 458, 459, 561
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 5 cut(s) 91, 106, 113, 334, 623
AjnI CCWGG 2 cut(s) 175, 568
AluBI AGCT 2 cut(s) 83, 676
AluI AGCT 2 cut(s) 83, 676
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 1 cut(s) 656
AoxI GGCC 2 cut(s) 572, 694
ApeKI GCWGC 2 cut(s) 83, 659
AseI ATTAAT 1 cut(s) 558
AspS9I GGNCC 3 cut(s) 179, 302, 572
AvaII GGWCC 2 cut(s) 179, 302
BalI TGGCCA 1 cut(s) 696
BbsI GAAGAC 1 cut(s) 98
BbvCI CCTCAGC 1 cut(s) 480
BbvI GCAGC 2 cut(s) 70, 646
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 2 cut(s) 177, 570
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 2 cut(s) 195, 215
BfuAI ACCTGC 3 cut(s) 120, 313, 648
BisI GCNGC 3 cut(s) 84, 575, 660
BlsI GCNGC 3 cut(s) 85, 576, 661
Bme1390I CCNGG 2 cut(s) 177, 570
Bme18I GGWCC 2 cut(s) 179, 302
BmgT120I GGNCC 3 cut(s) 179, 302, 572
BmrFI CCNGG 2 cut(s) 177, 570
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 1 cut(s) 535
BmuI ACTGGG 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 480
BsaAI YACGTR 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 175, 569
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 3 cut(s) 458, 459, 561
Bse1I ACTGG 4 cut(s) 100, 343, 469, 525
Bse3DI GCAATG 1 cut(s) 618
BseBI CCWGG 2 cut(s) 177, 570
BseDI CCNNGG 2 cut(s) 175, 569
BseGI GGATG 2 cut(s) 174, 444
BseLI CCNNNNNNNGG 3 cut(s) 458, 459, 561
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 2 cut(s) 407, 494
BseNI ACTGG 4 cut(s) 100, 343, 469, 525
BseXI GCAGC 2 cut(s) 70, 646
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 2 cut(s) 574, 696
BslFI GGGAC 1 cut(s) 475
BslI CCNNNNNNNGG 3 cut(s) 458, 459, 561
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 475
BsmI GAATGC 2 cut(s) 29, 403
BsnI GGCC 2 cut(s) 574, 696
Bsp143I GATC 1 cut(s) 648
BspACI CCGC 1 cut(s) 575
BspANI GGCC 2 cut(s) 574, 696
BspCNI CTCAG 2 cut(s) 408, 493
BspMI ACCTGC 3 cut(s) 120, 313, 648
BspPI GGATC 1 cut(s) 656
BspQI GCTCTTC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 618
BsrI ACTGG 4 cut(s) 100, 343, 469, 525
BssECI CCNNGG 2 cut(s) 175, 569
BssMI GATC 1 cut(s) 648
Bst2UI CCWGG 2 cut(s) 177, 570
Bst4CI ACNGT 3 cut(s) 160, 240, 427
Bst6I CTCTTC 2 cut(s) 47, 584
BstAPI GCANNNNNTGC 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 1 cut(s) 694
BstDEI CTNAG 4 cut(s) 144, 269, 416, 480
BstF5I GGATG 2 cut(s) 174, 444
BstKTI GATC 1 cut(s) 651
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 648
BstMWI GCNNNNNNNGC 3 cut(s) 83, 135, 574
BstNI CCWGG 2 cut(s) 177, 570
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 175, 568
BstV1I GCAGC 2 cut(s) 70, 646
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 574, 696
BtsCI GGATG 2 cut(s) 174, 444
BtsIMutI CAGTG 1 cut(s) 423
BveI ACCTGC 3 cut(s) 120, 313, 648
Cac8I GCNNGC 1 cut(s) 694
Cfr13I GGNCC 3 cut(s) 179, 302, 572
Csp6I GTAC 1 cut(s) 710
CviAII CATG 6 cut(s) 48, 233, 247, 263, 505, 585
CviQI GTAC 1 cut(s) 710
DdeI CTNAG 4 cut(s) 144, 269, 416, 480
DpnI GATC 1 cut(s) 650
DpnII GATC 1 cut(s) 648
EaeI YGGCCR 1 cut(s) 694
Eam1104I CTCTTC 2 cut(s) 47, 584
EarI CTCTTC 2 cut(s) 47, 584
Eco47I GGWCC 2 cut(s) 179, 302
EcoRII CCWGG 2 cut(s) 175, 568
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 6 cut(s) 51, 236, 250, 266, 508, 588
FaqI GGGAC 1 cut(s) 475
FatI CATG 6 cut(s) 47, 232, 246, 262, 504, 584
Fnu4HI GCNGC 3 cut(s) 84, 575, 660
FokI GGATG 2 cut(s) 181, 431
Fsp4HI GCNGC 3 cut(s) 84, 575, 660
FspBI CTAG 2 cut(s) 195, 215
GluI GCNGC 3 cut(s) 84, 575, 660
GsaI CCCAGC 1 cut(s) 28
HaeIII GGCC 2 cut(s) 574, 696
Hin1II CATG 6 cut(s) 51, 236, 250, 266, 508, 588
Hpy188I TCNGA 4 cut(s) 327, 534, 544, 592
Hpy188III TCNNGA 1 cut(s) 334
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 3 cut(s) 160, 240, 427
HpyCH4IV ACGT 2 cut(s) 37, 712
HpyCH4V TGCA 6 cut(s) 86, 236, 548, 611, 662, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 135, 574
HpyF3I CTNAG 4 cut(s) 144, 269, 416, 480
HpySE526I ACGT 2 cut(s) 37, 712
Hsp92II CATG 6 cut(s) 51, 236, 250, 266, 508, 588
Kzo9I GATC 1 cut(s) 648
LguI GCTCTTC 1 cut(s) 584
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 2 cut(s) 70, 646
LweI GCATC 1 cut(s) 535
MaeI CTAG 2 cut(s) 195, 215
MaeII ACGT 2 cut(s) 37, 712
MaeIII GTNAC 2 cut(s) 154, 223
MalI GATC 1 cut(s) 650
MbiI CCGCTC 1 cut(s) 577
MboI GATC 1 cut(s) 648
MboII GAAGA 4 cut(s) 34, 103, 130, 571
MfeI CAATTG 3 cut(s) 150, 438, 687
MlsI TGGCCA 1 cut(s) 696
MluCI AATT 5 cut(s) 150, 252, 438, 687, 700
MluNI TGGCCA 1 cut(s) 696
MnlI CCTC 4 cut(s) 489, 540, 610, 713
Mox20I TGGCCA 1 cut(s) 696
MscI TGGCCA 1 cut(s) 696
MseI TTAA 3 cut(s) 162, 219, 558
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 696
MspR9I CCNGG 2 cut(s) 177, 570
MunI CAATTG 3 cut(s) 150, 438, 687
Mva1269I GAATGC 2 cut(s) 29, 403
MvaI CCWGG 2 cut(s) 177, 570
MwoI GCNNNNNNNGC 3 cut(s) 83, 135, 574
NdeII GATC 1 cut(s) 648
NlaIII CATG 6 cut(s) 51, 236, 250, 266, 508, 588
NspI RCATGY 1 cut(s) 250
PciI ACATGT 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 584
PctI GAATGC 2 cut(s) 29, 403
PkrI GCNGC 3 cut(s) 85, 576, 661
Ppu21I YACGTR 1 cut(s) 713
PscI ACATGT 1 cut(s) 246
PshBI ATTAAT 1 cut(s) 558
Psp6I CCWGG 2 cut(s) 175, 568
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 2 cut(s) 175, 568
PspPI GGNCC 3 cut(s) 179, 302, 572
RsaI GTAC 1 cut(s) 711
RsaNI GTAC 1 cut(s) 710
RseI CAYNNNNRTG 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 584
SaqAI TTAA 3 cut(s) 162, 219, 558
SatI GCNGC 3 cut(s) 84, 575, 660
Sau3AI GATC 1 cut(s) 648
Sau96I GGNCC 3 cut(s) 179, 302, 572
ScrFI CCNGG 2 cut(s) 177, 570
SfaNI GCATC 1 cut(s) 535
SinI GGWCC 2 cut(s) 179, 302
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 5 cut(s) 150, 252, 438, 687, 700
SsiI CCGC 1 cut(s) 575
SspI AATATT 2 cut(s) 109, 278
SspMI CTAG 2 cut(s) 195, 215
StyD4I CCNGG 2 cut(s) 175, 568
TaaI ACNGT 3 cut(s) 160, 240, 427
TaiI ACGT 2 cut(s) 40, 715
TasI AATT 5 cut(s) 150, 252, 438, 687, 700
TauI GCSGC 1 cut(s) 577
Tru1I TTAA 3 cut(s) 162, 219, 558
Tru9I TTAA 3 cut(s) 162, 219, 558
TscAI CASTG 1 cut(s) 430
TseI GCWGC 2 cut(s) 83, 659
TspDTI ATGAA 3 cut(s) 58, 245, 609
TspGWI ACGGA 1 cut(s) 661
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 2 cut(s) 179, 302
VspI ATTAAT 1 cut(s) 558
XceI RCATGY 1 cut(s) 250
XspI CTAG 2 cut(s) 195, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.