FvH4_2g08860

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000659
Physical Location & Seq
Forward (+)
7753576 .. 7754111
536 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08860.t1

Sequence Viewer

Length: 432 bp
ATGGAGGTTGAAAAGGGAAAGACATACCTGCTACTGATCGTCAGTGCTGCAGTCAATGACGAGCTATTCTTTGACATAGCTGGCCACAACTTGACAGTGGTAGAGATTGATGCAGTATATACCAAACCATTTACGTCTCAGGCAATACTAATAGCACCAGGCCACACCTTCATGTGCAGGCAAACCAAGTCCCCAGTAGATATTTCATGGCTACAAGCACTCAATGCCACAGCATTTGTGCTGAGTTACAACGGGAAGCTGAGAAGACTAGACACAGTAAAGTACCCGGAAAATGTACCTCTTGAAGTGGATAGACATCTTAACACATCTCGCTGCTTCTTTGAACAACATCACTTTCATGATGCCCCAAGTTGGACTGCTTCAAGCTCATTACTTCAACATCACGGGGGTATTTTCTACCGATTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

144

Amino Acids

16.24

Weight (kDa)

6.42

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 2 - 57 3.3e-18 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 82
AfaI GTAC 2 cut(s) 284, 297
AfiI CCNNNNNNNGG 1 cut(s) 372
AgsI TTSAA 5 cut(s) 11, 305, 344, 384, 398
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 4 cut(s) 64, 80, 259, 387
AluI AGCT 4 cut(s) 64, 80, 259, 387
Alw26I GTCTC 1 cut(s) 141
AoxI GGCC 2 cut(s) 82, 160
ApeKI GCWGC 2 cut(s) 47, 333
AsuC2I CCSGG 1 cut(s) 287
BalI TGGCCA 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 34, 320
BciT130I CCWGG 1 cut(s) 159
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 36
BisI GCNGC 2 cut(s) 48, 334
BlsI GCNGC 2 cut(s) 49, 335
Bme1390I CCNGG 2 cut(s) 159, 287
BmrFI CCNGG 2 cut(s) 159, 287
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 2 cut(s) 100, 352
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 159
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMII CTCAG 3 cut(s) 152, 233, 251
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 34, 320
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 2 cut(s) 84, 162
BsiSI CCGG 1 cut(s) 287
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 2 cut(s) 84, 162
Bsp143I GATC 1 cut(s) 36
BspANI GGCC 2 cut(s) 84, 162
BspCNI CTCAG 3 cut(s) 151, 234, 252
BspHI TCATGA 1 cut(s) 358
BspMAI CTGCAG 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 194
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 97, 277
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 82, 179
BstDEI CTNAG 3 cut(s) 138, 242, 260
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 157, 285
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 34, 320
BstV2I GAAGAC 1 cut(s) 271
BsuRI GGCC 2 cut(s) 84, 162
BtsIMutI CAGTG 2 cut(s) 49, 102
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 82, 179
CciI TCATGA 1 cut(s) 358
Csp6I GTAC 2 cut(s) 283, 296
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 3 cut(s) 172, 207, 359
CviJI RGCY 7 cut(s) 64, 80, 84, 162, 211, 259, 387
CviKI_1 RGCY 7 cut(s) 64, 80, 84, 162, 211, 259, 387
CviQI GTAC 2 cut(s) 283, 296
DdeI CTNAG 3 cut(s) 138, 242, 260
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 141
FaeI CATG 3 cut(s) 175, 210, 362
FaiI YATR 7 cut(s) 25, 77, 118, 120, 173, 208, 360
FaqI GGGAC 1 cut(s) 175
FatI CATG 3 cut(s) 171, 206, 358
Fnu4HI GCNGC 2 cut(s) 48, 334
Fsp4HI GCNGC 2 cut(s) 48, 334
FspBI CTAG 1 cut(s) 269
GluI GCNGC 2 cut(s) 48, 334
HaeIII GGCC 2 cut(s) 84, 162
HapII CCGG 1 cut(s) 287
Hin1II CATG 3 cut(s) 175, 210, 362
HpaII CCGG 1 cut(s) 287
Hpy188III TCNNGA 3 cut(s) 302, 359, 429
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 97, 277
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 50, 113, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 3 cut(s) 138, 242, 260
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 3 cut(s) 175, 210, 362
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 8 cut(s) 41, 66, 125, 144, 163, 171, 207, 300
Lsp1109I GCAGC 2 cut(s) 34, 320
LweI GCATC 2 cut(s) 100, 352
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 276
MlsI TGGCCA 1 cut(s) 84
MluNI TGGCCA 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 1 cut(s) 309
Mox20I TGGCCA 1 cut(s) 84
MscI TGGCCA 1 cut(s) 84
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 170, 357
Msp20I TGGCCA 1 cut(s) 84
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 2 cut(s) 159, 287
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 287
NdeII GATC 1 cut(s) 36
NlaIII CATG 3 cut(s) 175, 210, 362
PagI TCATGA 1 cut(s) 358
PkrI GCNGC 2 cut(s) 49, 335
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PstI CTGCAG 1 cut(s) 52
RsaI GTAC 2 cut(s) 284, 297
RsaNI GTAC 2 cut(s) 283, 296
RseI CAYNNNNRTG 2 cut(s) 170, 357
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 48, 334
Sau3AI GATC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 159, 287
SetI ASST 9 cut(s) 9, 30, 66, 82, 137, 170, 261, 301, 389
SfaNI GCATC 2 cut(s) 100, 352
SfcI CTRYAG 1 cut(s) 48
SmiMI CAYNNNNRTG 2 cut(s) 170, 357
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 157, 285
TaaI ACNGT 2 cut(s) 97, 277
TaiI ACGT 1 cut(s) 137
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 49, 102
TseI GCWGC 2 cut(s) 47, 333
TspDTI ATGAA 3 cut(s) 160, 195, 347
TspRI CASTG 2 cut(s) 49, 102
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.