RchiOBHm_Chr6g0264101

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000659
Physical Location & Seq
Reverse (-)
19196829 .. 19201842
5014 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23686

Sequence Viewer

Length: 1464 bp
ATGTTTTTCATTTATATGCAGATTCAAGTAAAGAATGTGAGCAGGTTGTGCCATCCTAAACCAATTGTTACAGTTAATGGGATGTTCCCTGGACCTACAATCTATGCTAGAGAAGGCGATACAGTTCTAGTTAATGTTACCAACCATGCACAGTATAACATGTCAATTCATTGGCATGGTCTAAGGCAATATAGAAATGGGTGGGCAAATGGACCTGCTTATATAACACAATGTCCGATCAAGACAGGAAACTTTTACACCTACAATATGACAATCACAGGGCAAAGAGGAACTCTATGGTGGCATGCTCACATATTTTGGCTGAGAGCCACTGTCTATGGAGCAATTGTCATCCTGCCCAGACACGGCACTGGCTTTCCTTTTCCTCAGCCTTGCAGTGAAACTAATCTCGTGTTAGGAGAATGGTGGAATAACGATGTTGAAGAGATTGTTAAACAAGGGAACAGACTAGGGTTGCCTCCAAATATGTCAGATGCACATACCATTAATGGGAAGCCAGGGCCGCTCTTTCCATGTTCTGAAAAACGACCATACAGGAAGGAGGGAAGGTGGAGAAAGTTCTCTCCAGTAGATACCTTTGCAATGGAGGTTGAACAGGGAAAGACTTACCTGCTACGGATCGTCAATGCTGCACTCAATGACAAGCTATTCTTTGCAATTGTTGGCCACAACTTGATAGTGGTAGAGGTTGATGCAGTCTATACATCTCAGGCAATACTAATTGCACCAGGCCAGACCACAAATGTTCTTTTTCAGGCAAACCAAGTCCCTAGCAGATACTTCATGGCTGCAAGGTCATTCATGGATGCACCTCTTTCCATAGACAACAAAACTACCACTGCAATCCTACAATATAAAGGCATCCCTAATTCTGTGGTGCCAGTCATTTCCCAACTTCCAGCACTCAATGACACAGCTTTTGTACTGAGCTACAATGCTAATCTGAGAAGCCTAAACACAGAAAAGTACCCAACAAATGTACCTCTTAAAGTGGATAGACATCTTTTGTTCACAATTGGTTTGGGAATCAACCCATGCACTACTTGCCTGAATGGAACACAGCTCACTGCTTCCTTGAACAACATCACATTCGTGATGCCTCAAATCGGGTTGCTTCAAGCTCATCACTTCAACACCAAGGGGGTATTTTCCACAGATTTCCCTGACCTCCCGCCAACAACGTTCACTTATACTGGTGCCCCACTCACTGCCAACCTTGGGACTAAACTAGGCACCCGGGAATCCCATCCAATCCACCTTCATGGTTACAATTTTTTCATTGTTGGGACCGGAGTTGGTAACTTTGACCCCAAGAAGGACCCCGCTAAGTTTAACTTGGTGGATACTCCTGAAAGAAACACCATTGGAGTTCCCACGGGTGGTTGGGCTGCCATAAGGTTCAGGGCTGAGAATCCAGGTAAATACATCAGAATAACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

487

Amino Acids

54.41

Weight (kDa)

9.45

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 8 - 121 2.2e-40 Multicopper oxidase
Cu-oxidase PF00394 135 - 294 1.8e-36 Multicopper oxidase
Cu-oxidase_2 PF07731 419 - 482 1.4e-21 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 33, 223, 639
AccB1I GGYRCC 3 cut(s) 898, 1217, 1253
AccBSI CCGCTC 1 cut(s) 526
AciI CCGC 3 cut(s) 524, 1193, 1344
AclI AACGTT 1 cut(s) 1202
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 1 cut(s) 685
AfaI GTAC 3 cut(s) 945, 989, 1002
AfiI CCNNNNNNNGG 6 cut(s) 365, 510, 1127, 1239, 1336, 1400
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 6 cut(s) 26, 443, 614, 1099, 1139, 1153
AjnI CCWGG 4 cut(s) 88, 517, 748, 1435
AleI CACNNNNGTG 1 cut(s) 1112
AluBI AGCT 5 cut(s) 667, 938, 951, 1084, 1142
AluI AGCT 5 cut(s) 667, 938, 951, 1084, 1142
AlwI GGATC 1 cut(s) 647
Ama87I CYCGRG 1 cut(s) 1257
AoxI GGCC 3 cut(s) 521, 685, 751
ApeKI GCWGC 3 cut(s) 650, 809, 1409
ArsI GACNNNNNNTTYG 2 cut(s) 923, 955
AseI ATTAAT 1 cut(s) 507
AspS9I GGNCC 5 cut(s) 92, 212, 521, 1308, 1339
AsuC2I CCSGG 2 cut(s) 1258, 1259
AvaI CYCGRG 1 cut(s) 1257
AvaII GGWCC 4 cut(s) 92, 212, 1308, 1339
BaeGI GKGCMC 1 cut(s) 1222
BaeI ACNNNNGTAYC 2 cut(s) 984, 1017
BalI TGGCCA 1 cut(s) 687
BanI GGYRCC 3 cut(s) 898, 1217, 1253
BauI CACGAG 1 cut(s) 410
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 3 cut(s) 637, 796, 1396
BccI CCATC 2 cut(s) 60, 1275
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 4 cut(s) 90, 519, 750, 1437
BciVI GTATCC 1 cut(s) 1357
BcnI CCSGG 2 cut(s) 1258, 1259
BfaI CTAG 5 cut(s) 108, 128, 470, 792, 1250
BfuAI ACCTGC 3 cut(s) 33, 223, 639
BfuI GTATCC 1 cut(s) 1357
BisI GCNGC 4 cut(s) 524, 651, 810, 1410
BlsI GCNGC 4 cut(s) 525, 652, 811, 1411
Bme1390I CCNGG 6 cut(s) 90, 519, 750, 1258, 1259, 1437
Bme18I GGWCC 4 cut(s) 92, 212, 1308, 1339
BmeT110I CYCGRG 1 cut(s) 1257
BmgT120I GGNCC 5 cut(s) 92, 212, 521, 1308, 1339
BmiI GGNNCC 5 cut(s) 900, 1219, 1255, 1309, 1341
BmrFI CCNGG 6 cut(s) 90, 519, 750, 1258, 1259, 1437
BmsI GCATC 5 cut(s) 484, 703, 817, 891, 1107
BpmI CTGGAG 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 387
BpuMI CCSGG 2 cut(s) 1258, 1259
BsaBI GATNNNNATC 1 cut(s) 1020
BsaJI CCNNGG 6 cut(s) 88, 518, 1158, 1237, 1257, 1395
BsaWI WCCGGW 1 cut(s) 1310
BsaXI ACNNNNNCTCC 4 cut(s) 333, 363, 554, 584
Bsc4I CCNNNNNNNGG 6 cut(s) 365, 510, 1127, 1239, 1336, 1400
Bse1I ACTGG 4 cut(s) 376, 587, 902, 1219
Bse3DI GCAATG 1 cut(s) 609
Bse8I GATNNNNATC 1 cut(s) 1020
BseBI CCWGG 4 cut(s) 90, 519, 750, 1437
BseDI CCNNGG 6 cut(s) 88, 518, 1158, 1237, 1257, 1395
BseGI GGATG 6 cut(s) 52, 87, 351, 832, 882, 1267
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 6 cut(s) 365, 510, 1127, 1239, 1336, 1400
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 6 cut(s) 314, 401, 743, 938, 956, 1419
BseNI ACTGG 4 cut(s) 376, 587, 902, 1219
BseSI GKGCMC 1 cut(s) 1222
BseXI GCAGC 3 cut(s) 637, 796, 1396
BsgI GTGCAG 1 cut(s) 636
BshFI GGCC 3 cut(s) 523, 687, 753
BshNI GGYRCC 3 cut(s) 898, 1217, 1253
BsiHKCI CYCGRG 1 cut(s) 1257
BsiSI CCGG 2 cut(s) 1258, 1311
BslFI GGGAC 3 cut(s) 773, 1255, 1321
BslI CCNNNNNNNGG 6 cut(s) 365, 510, 1127, 1239, 1336, 1400
BsmFI GGGAC 3 cut(s) 773, 1255, 1321
BsnI GGCC 3 cut(s) 523, 687, 753
BsoBI CYCGRG 1 cut(s) 1257
Bsp1286I GDGCHC 1 cut(s) 1222
Bsp143I GATC 2 cut(s) 237, 639
BspACI CCGC 3 cut(s) 524, 1193, 1344
BspANI GGCC 3 cut(s) 523, 687, 753
BspCNI CTCAG 6 cut(s) 315, 400, 742, 939, 957, 1420
BspLI GGNNCC 5 cut(s) 900, 1219, 1255, 1309, 1341
BspMI ACCTGC 3 cut(s) 33, 223, 639
BspPI GGATC 1 cut(s) 647
BspT107I GGYRCC 3 cut(s) 898, 1217, 1253
BsrBI CCGCTC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 609
BsrI ACTGG 4 cut(s) 376, 587, 902, 1219
BssECI CCNNGG 6 cut(s) 88, 518, 1158, 1237, 1257, 1395
BssMI GATC 2 cut(s) 237, 639
BssSI CACGAG 1 cut(s) 410
BssT1I CCWWGG 2 cut(s) 1158, 1237
Bst2BI CACGAG 1 cut(s) 410
Bst2UI CCWGG 4 cut(s) 90, 519, 750, 1437
Bst4CI ACNGT 4 cut(s) 73, 124, 153, 334
Bst6I CTCTTC 1 cut(s) 438
BstAPI GCANNNNNTGC 2 cut(s) 48, 1065
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 8 cut(s) 182, 323, 387, 729, 947, 965, 1347, 1428
BstDSI CCRYGG 1 cut(s) 1395
BstF5I GGATG 6 cut(s) 52, 87, 351, 832, 882, 1267
BstKTI GATC 2 cut(s) 240, 642
BstMBI GATC 2 cut(s) 237, 639
BstMWI GCNNNNNNNGC 3 cut(s) 48, 523, 1065
BstNI CCWGG 4 cut(s) 90, 519, 750, 1437
BstNSI RCATGY 2 cut(s) 163, 308
BstSCI CCNGG 6 cut(s) 88, 517, 748, 1256, 1257, 1435
BstSLI GKGCMC 1 cut(s) 1222
BstV1I GCAGC 3 cut(s) 637, 796, 1396
BstXI CCANNNNNNTGG 1 cut(s) 1283
BsuI GTATCC 1 cut(s) 1357
BsuRI GGCC 3 cut(s) 523, 687, 753
BtgI CCRYGG 1 cut(s) 1395
BtsCI GGATG 6 cut(s) 52, 87, 351, 832, 882, 1267
BtsI GCAGTG 4 cut(s) 403, 858, 1086, 1227
BtsIMutI CAGTG 6 cut(s) 330, 369, 403, 858, 1086, 1227
BveI ACCTGC 3 cut(s) 33, 223, 639
Cac8I GCNNGC 1 cut(s) 306
Cfr13I GGNCC 5 cut(s) 92, 212, 521, 1308, 1339
Cfr9I CCCGGG 1 cut(s) 1257
Csp6I GTAC 3 cut(s) 944, 988, 1001
CviAII CATG 9 cut(s) 146, 160, 176, 305, 534, 805, 823, 1056, 1283
CviQI GTAC 3 cut(s) 944, 988, 1001
DdeI CTNAG 8 cut(s) 182, 323, 387, 729, 947, 965, 1347, 1428
DpnI GATC 2 cut(s) 239, 641
DpnII GATC 2 cut(s) 237, 639
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 2 cut(s) 1158, 1237
Eco47I GGWCC 4 cut(s) 92, 212, 1308, 1339
Eco88I CYCGRG 1 cut(s) 1257
EcoO109I RGGNCCY 1 cut(s) 1339
EcoRII CCWGG 4 cut(s) 88, 517, 748, 1435
EcoT14I CCWWGG 2 cut(s) 1158, 1237
ErhI CCWWGG 2 cut(s) 1158, 1237
FaeI CATG 9 cut(s) 149, 163, 179, 308, 537, 808, 826, 1059, 1286
FalI AAGNNNNNCTT 4 cut(s) 656, 688, 1340, 1372
FaqI GGGAC 3 cut(s) 773, 1255, 1321
FatI CATG 9 cut(s) 145, 159, 175, 304, 533, 804, 822, 1055, 1282
FauI CCCGC 2 cut(s) 1200, 1351
Fnu4HI GCNGC 4 cut(s) 524, 651, 810, 1410
FokI GGATG 6 cut(s) 39, 94, 338, 839, 869, 1254
Fsp4HI GCNGC 4 cut(s) 524, 651, 810, 1410
FspBI CTAG 5 cut(s) 108, 128, 470, 792, 1250
GluI GCNGC 4 cut(s) 524, 651, 810, 1410
GsuI CTGGAG 1 cut(s) 570
HaeIII GGCC 3 cut(s) 523, 687, 753
HapII CCGG 2 cut(s) 1258, 1311
Hin1II CATG 9 cut(s) 149, 163, 179, 308, 537, 808, 826, 1059, 1286
HinfI GANTC 4 cut(s) 22, 1047, 1262, 1432
HpaII CCGG 2 cut(s) 1258, 1311
Hpy166II GTNNAC 2 cut(s) 1032, 1206
Hpy188I TCNGA 5 cut(s) 237, 493, 541, 966, 1451
Hpy188III TCNNGA 3 cut(s) 241, 1114, 1370
Hpy8I GTNNAC 2 cut(s) 1032, 1206
HpyAV CCTTC 5 cut(s) 107, 553, 561, 1289, 1330
HpyCH4III ACNGT 4 cut(s) 73, 124, 153, 334
HpyCH4IV ACGT 1 cut(s) 1202
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 523, 1065
HpyF3I CTNAG 8 cut(s) 182, 323, 387, 729, 947, 965, 1347, 1428
HpySE526I ACGT 1 cut(s) 1202
Hsp92II CATG 9 cut(s) 149, 163, 179, 308, 537, 808, 826, 1059, 1286
Kzo9I GATC 2 cut(s) 237, 639
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 3 cut(s) 637, 796, 1396
LweI GCATC 5 cut(s) 484, 703, 817, 891, 1107
MaeI CTAG 5 cut(s) 108, 128, 470, 792, 1250
MaeII ACGT 1 cut(s) 1202
MaeIII GTNAC 4 cut(s) 67, 136, 1286, 1319
MalI GATC 2 cut(s) 239, 641
MbiI CCGCTC 1 cut(s) 526
MboI GATC 2 cut(s) 237, 639
MboII GAAGA 1 cut(s) 455
MfeI CAATTG 4 cut(s) 63, 345, 678, 1035
MhlI GDGCHC 1 cut(s) 1222
MlsI TGGCCA 1 cut(s) 687
MluCI AATT 8 cut(s) 63, 165, 345, 678, 741, 889, 1035, 1291
MluNI TGGCCA 1 cut(s) 687
Mox20I TGGCCA 1 cut(s) 687
MscI TGGCCA 1 cut(s) 687
MseI TTAA 6 cut(s) 75, 132, 453, 507, 1008, 1353
MslI CAYNNNNRTG 4 cut(s) 14, 174, 1112, 1281
Msp20I TGGCCA 1 cut(s) 687
MspI CCGG 2 cut(s) 1258, 1311
MspR9I CCNGG 6 cut(s) 90, 519, 750, 1258, 1259, 1437
MunI CAATTG 4 cut(s) 63, 345, 678, 1035
MvaI CCWGG 4 cut(s) 90, 519, 750, 1437
MwoI GCNNNNNNNGC 3 cut(s) 48, 523, 1065
NciI CCSGG 2 cut(s) 1258, 1259
NdeII GATC 2 cut(s) 237, 639
NlaIII CATG 9 cut(s) 149, 163, 179, 308, 537, 808, 826, 1059, 1286
NlaIV GGNNCC 5 cut(s) 900, 1219, 1255, 1309, 1341
NspI RCATGY 2 cut(s) 163, 308
OliI CACNNNNGTG 1 cut(s) 1112
PaeI GCATGC 1 cut(s) 308
PciI ACATGT 1 cut(s) 159
PfeI GAWTC 4 cut(s) 22, 1047, 1262, 1432
PkrI GCNGC 4 cut(s) 525, 652, 811, 1411
PpuMI RGGWCCY 1 cut(s) 1339
PscI ACATGT 1 cut(s) 159
PshBI ATTAAT 1 cut(s) 507
Psp1406I AACGTT 1 cut(s) 1202
Psp5II RGGWCCY 1 cut(s) 1339
Psp6I CCWGG 4 cut(s) 88, 517, 748, 1435
PspGI CCWGG 4 cut(s) 88, 517, 748, 1435
PspN4I GGNNCC 5 cut(s) 900, 1219, 1255, 1309, 1341
PspPI GGNCC 5 cut(s) 92, 212, 521, 1308, 1339
PspPPI RGGWCCY 1 cut(s) 1339
RsaI GTAC 3 cut(s) 945, 989, 1002
RsaNI GTAC 3 cut(s) 944, 988, 1001
RseI CAYNNNNRTG 4 cut(s) 14, 174, 1112, 1281
SaqAI TTAA 6 cut(s) 75, 132, 453, 507, 1008, 1353
SatI GCNGC 4 cut(s) 524, 651, 810, 1410
Sau3AI GATC 2 cut(s) 237, 639
Sau96I GGNCC 5 cut(s) 92, 212, 521, 1308, 1339
ScrFI CCNGG 6 cut(s) 90, 519, 750, 1258, 1259, 1437
SduI GDGCHC 1 cut(s) 1222
SfaNI GCATC 5 cut(s) 484, 703, 817, 891, 1107
SinI GGWCC 4 cut(s) 92, 212, 1308, 1339
SmaI CCCGGG 1 cut(s) 1259
SmiMI CAYNNNNRTG 4 cut(s) 14, 174, 1112, 1281
SphI GCATGC 1 cut(s) 308
Sse9I AATT 8 cut(s) 63, 165, 345, 678, 741, 889, 1035, 1291
SsiI CCGC 3 cut(s) 524, 1193, 1344
SspMI CTAG 5 cut(s) 108, 128, 470, 792, 1250
StyD4I CCNGG 6 cut(s) 88, 517, 748, 1256, 1257, 1435
StyI CCWWGG 2 cut(s) 1158, 1237
TaaI ACNGT 4 cut(s) 73, 124, 153, 334
TaiI ACGT 1 cut(s) 1205
TasI AATT 8 cut(s) 63, 165, 345, 678, 741, 889, 1035, 1291
TatI WGTACW 1 cut(s) 943
TauI GCSGC 1 cut(s) 526
TfiI GAWTC 4 cut(s) 22, 1047, 1262, 1432
Tru1I TTAA 6 cut(s) 75, 132, 453, 507, 1008, 1353
Tru9I TTAA 6 cut(s) 75, 132, 453, 507, 1008, 1353
TscAI CASTG 6 cut(s) 337, 376, 403, 865, 1093, 1234
TseI GCWGC 3 cut(s) 650, 809, 1409
TspDTI ATGAA 5 cut(s) 158, 793, 811, 1271, 1288
TspGWI ACGGA 1 cut(s) 652
TspMI CCCGGG 1 cut(s) 1257
TspRI CASTG 6 cut(s) 337, 376, 403, 865, 1093, 1234
VpaK11BI GGWCC 4 cut(s) 92, 212, 1308, 1339
VspI ATTAAT 1 cut(s) 507
XceI RCATGY 2 cut(s) 163, 308
XmaI CCCGGG 1 cut(s) 1257
XspI CTAG 5 cut(s) 108, 128, 470, 792, 1250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.