Rh6AG131700

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
19873053 .. 19873406
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG131700.1

Sequence Viewer

Length: 354 bp
ATGGAGGTTGAACAGGGAAAGACTTACCTGCTACGGATAGTCAATGCTGCACTCAATGATGAACTATTCTTTGCAATTGCTGGCCACAACTTGACAGTGGTAGAGGTTGATGCAGTCTATACCAAACCATTTACATCTCAGGCAATACTAATTGAACCAAGCCAGACCACAAATGTTATTTTTCAGGCAAACCAAGTCCCTGGTAGATACTTCATGGCTGCAAAGTCATTCATGGATGCACCTCTTTCCATAGACAATAAAACTGCCACTGCAATCCTACAATATAAAGGCATCCCTAATTGCTGCCAGTCCTTTCCCAACTTCCAGCACTCAATGACACAGCTTTTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

117

Amino Acids

13.07

Weight (kDa)

5.51

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 2 - 97 1.3e-31 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 82
AfaI GTAC 1 cut(s) 350
AgsI TTSAA 2 cut(s) 11, 155
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 3 cut(s) 47, 218, 303
ArsI GACNNNNNNTTYG 1 cut(s) 328
BalI TGGCCA 1 cut(s) 84
BbvI GCAGC 3 cut(s) 34, 205, 290
BciT130I CCWGG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 36
BisI GCNGC 3 cut(s) 48, 219, 304
BlsI GCNGC 3 cut(s) 49, 220, 305
Bme1390I CCNGG 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 3 cut(s) 100, 226, 300
BsaJI CCNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 2 cut(s) 241, 291
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 307
BseXI GCAGC 3 cut(s) 34, 205, 290
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 84
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 84
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 1 cut(s) 151
BspMI ACCTGC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 2 cut(s) 241, 291
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 3 cut(s) 34, 205, 290
BstXI CCANNNNNNTGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 84
BtsCI GGATG 2 cut(s) 241, 291
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 102, 267
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 349
CviAII CATG 2 cut(s) 214, 232
CviJI RGCY 4 cut(s) 84, 162, 218, 343
CviKI_1 RGCY 4 cut(s) 84, 162, 218, 343
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 1 cut(s) 138
EaeI YGGCCR 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 217, 235
FaiI YATR 5 cut(s) 120, 215, 233, 251, 285
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 213, 231
Fnu4HI GCNGC 3 cut(s) 48, 219, 304
FokI GGATG 2 cut(s) 248, 278
Fsp4HI GCNGC 3 cut(s) 48, 219, 304
GluI GCNGC 3 cut(s) 48, 219, 304
HaeIII GGCC 1 cut(s) 84
Hin1II CATG 2 cut(s) 217, 235
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 6 cut(s) 50, 74, 113, 221, 239, 272
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 2 cut(s) 217, 235
LpnPI CCDG 9 cut(s) 41, 66, 125, 170, 176, 186, 213, 320, 338
Lsp1109I GCAGC 3 cut(s) 34, 205, 290
LweI GCATC 3 cut(s) 100, 226, 300
MfeI CAATTG 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 84
MluCI AATT 3 cut(s) 75, 150, 298
MluNI TGGCCA 1 cut(s) 84
MnlI CCTC 2 cut(s) 97, 252
Mox20I TGGCCA 1 cut(s) 84
MscI TGGCCA 1 cut(s) 84
Msp20I TGGCCA 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 201
NlaIII CATG 2 cut(s) 217, 235
PkrI GCNGC 3 cut(s) 49, 220, 305
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SatI GCNGC 3 cut(s) 48, 219, 304
ScrFI CCNGG 1 cut(s) 201
SetI ASST 5 cut(s) 9, 30, 108, 244, 345
SfaNI GCATC 3 cut(s) 100, 226, 300
Sse9I AATT 3 cut(s) 75, 150, 298
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 97
TasI AATT 3 cut(s) 75, 150, 298
TatI WGTACW 1 cut(s) 348
TscAI CASTG 2 cut(s) 102, 274
TseI GCWGC 3 cut(s) 47, 218, 303
TspDTI ATGAA 3 cut(s) 75, 202, 220
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 2 cut(s) 102, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.