Rmu_co8391921.1_g000001

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8391921.1
OG0000659
Physical Location & Seq
Reverse (-)
2 .. 1106
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8391921.1_g000001.1.cds

Sequence Viewer

Length: 737 bp
atgtcaattcattggcatggactaaagcaatatcgaaatgggtgggcagatggacctgcttatataacacaatgtccgatcaagacaggaaacagttacacctacaatatgacaatcacagggcaaagaggaactctatggtggcatgctcacatcttttggctaagagccaccgtctatggagctatcgtcatcctgcccaaacaagggactggctttccttttcctcagccttacagggaagctaatctgatcttaggagaatggtggaataatgatgtggaagaggttgttaaacaagggaatagactcgggttgcctccgaatatgtcagatgcgcatactattaatgggaagccagggcctctctttccatgttccgaaaaatatacctttgcgttggaggttgaacaagggaagacatacctgttacgaatcatcaatgctgcactcaatgacgagctattctttgcaatagctggccacaacttgacagtggtagaggttgatgcagtctataccaaaccatttacatctcaagcaatactaattgcaccaggccagaccacaaatgttcttgttcaggcaaaccaagtccctagtagatatttcatggctgcccggccattcatggatgcacctctttccatagacaataagactgccactgcaatcctgcaatataaaggcatccccaattctgtgctgccagtcctttcccaacttccagcactcaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

245

Amino Acids

27.32

Weight (kDa)

8.47

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 64
AcoI YGGCCR 2 cut(s) 481, 623
AfiI CCNNNNNNNGG 2 cut(s) 206, 207
AgsI TTSAA 1 cut(s) 410
AjnI CCWGG 2 cut(s) 358, 556
AluBI AGCT 4 cut(s) 185, 245, 463, 479
AluI AGCT 4 cut(s) 185, 245, 463, 479
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 4 cut(s) 362, 481, 559, 623
ApeKI GCWGC 3 cut(s) 446, 617, 706
AseI ATTAAT 1 cut(s) 348
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 53, 362
AsuC2I CCSGG 1 cut(s) 622
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 1 cut(s) 53
BalI TGGCCA 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 425
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 433, 604, 693
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 2 cut(s) 360, 558
BcnI CCSGG 1 cut(s) 622
BfaI CTAG 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 64
BisI GCNGC 3 cut(s) 447, 618, 707
BlsI GCNGC 3 cut(s) 448, 619, 708
Bme1390I CCNGG 3 cut(s) 360, 558, 622
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 53, 362
BmrFI CCNGG 3 cut(s) 360, 558, 622
BmsI GCATC 4 cut(s) 325, 499, 625, 699
BpiI GAAGAC 1 cut(s) 425
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 522
BpuMI CCSGG 1 cut(s) 622
BsaJI CCNNGG 1 cut(s) 359
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 207
Bse1I ACTGG 2 cut(s) 217, 710
BseBI CCWGG 2 cut(s) 360, 558
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 3 cut(s) 192, 640, 690
BseLI CCNNNNNNNGG 2 cut(s) 206, 207
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 2 cut(s) 217, 710
BseXI GCAGC 3 cut(s) 433, 604, 693
BsgI GTGCAG 1 cut(s) 432
BshFI GGCC 4 cut(s) 364, 483, 561, 625
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 1 cut(s) 622
BslFI GGGAC 2 cut(s) 223, 581
BslI CCNNNNNNNGG 2 cut(s) 206, 207
BsmFI GGGAC 2 cut(s) 223, 581
BsnI GGCC 4 cut(s) 364, 483, 561, 625
BsoBI CYCGRG 1 cut(s) 311
Bsp143I GATC 2 cut(s) 78, 252
BspANI GGCC 4 cut(s) 364, 483, 561, 625
BspCNI CTCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 64
BsrI ACTGG 2 cut(s) 217, 710
BssECI CCNNGG 1 cut(s) 359
BssMI GATC 2 cut(s) 78, 252
Bst2UI CCWGG 2 cut(s) 360, 558
Bst4CI ACNGT 3 cut(s) 95, 175, 496
Bst6I CTCTTC 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 147, 481
BstDEI CTNAG 3 cut(s) 164, 228, 256
BstF5I GGATG 3 cut(s) 192, 640, 690
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 81, 255
BstMBI GATC 2 cut(s) 78, 252
BstNI CCWGG 2 cut(s) 360, 558
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 3 cut(s) 358, 556, 620
BstV1I GCAGC 3 cut(s) 433, 604, 693
BstV2I GAAGAC 1 cut(s) 425
BsuRI GGCC 4 cut(s) 364, 483, 561, 625
BtsCI GGATG 3 cut(s) 192, 640, 690
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 2 cut(s) 501, 666
BveI ACCTGC 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 147, 481
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 53, 362
CviAII CATG 5 cut(s) 17, 146, 375, 613, 631
DdeI CTNAG 3 cut(s) 164, 228, 256
DpnI GATC 2 cut(s) 80, 254
DpnII GATC 2 cut(s) 78, 252
EaeI YGGCCR 2 cut(s) 481, 623
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 311
EcoO109I RGGNCCY 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 358, 556
FaeI CATG 5 cut(s) 20, 149, 378, 616, 634
FaqI GGGAC 2 cut(s) 223, 581
FatI CATG 5 cut(s) 16, 145, 374, 612, 630
Fnu4HI GCNGC 3 cut(s) 447, 618, 707
FokI GGATG 3 cut(s) 179, 647, 677
Fsp4HI GCNGC 3 cut(s) 447, 618, 707
FspAI RTGCGCAY 1 cut(s) 339
FspBI CTAG 1 cut(s) 600
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 1 cut(s) 339
GluI GCNGC 3 cut(s) 447, 618, 707
HaeIII GGCC 4 cut(s) 364, 483, 561, 625
HapII CCGG 1 cut(s) 622
HhaI GCGC 1 cut(s) 340
Hin1II CATG 5 cut(s) 20, 149, 378, 616, 634
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 2 cut(s) 309, 435
HpaII CCGG 1 cut(s) 622
Hpy188I TCNGA 5 cut(s) 78, 252, 324, 334, 382
Hpy188III TCNNGA 1 cut(s) 82
HpyCH4III ACNGT 3 cut(s) 95, 175, 496
HpyCH4V TGCA 7 cut(s) 449, 473, 512, 554, 638, 671, 679
HpyF3I CTNAG 3 cut(s) 164, 228, 256
Hsp92II CATG 5 cut(s) 20, 149, 378, 616, 634
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 78, 252
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 3 cut(s) 433, 604, 693
LweI GCATC 4 cut(s) 325, 499, 625, 699
MaeI CTAG 1 cut(s) 600
MaeIII GTNAC 2 cut(s) 95, 429
MalI GATC 2 cut(s) 80, 254
MboI GATC 2 cut(s) 78, 252
MboII GAAGA 2 cut(s) 296, 430
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 3 cut(s) 6, 549, 697
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 1 cut(s) 303
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 8 cut(s) 122, 237, 280, 330, 375, 397, 496, 651
Mox20I TGGCCA 1 cut(s) 483
MscI TGGCCA 1 cut(s) 483
MseI TTAA 2 cut(s) 294, 348
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 1 cut(s) 483
MspI CCGG 1 cut(s) 622
MspR9I CCNGG 3 cut(s) 360, 558, 622
MvaI CCWGG 2 cut(s) 360, 558
NciI CCSGG 1 cut(s) 622
NdeII GATC 2 cut(s) 78, 252
NlaIII CATG 5 cut(s) 20, 149, 378, 616, 634
NsbI TGCGCA 1 cut(s) 339
NspI RCATGY 1 cut(s) 149
PaeI GCATGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 435
PkrI GCNGC 3 cut(s) 448, 619, 708
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PshBI ATTAAT 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 358, 556
PspGI CCWGG 2 cut(s) 358, 556
PspPI GGNCC 2 cut(s) 53, 362
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 294, 348
SatI GCNGC 3 cut(s) 447, 618, 707
Sau3AI GATC 2 cut(s) 78, 252
Sau96I GGNCC 2 cut(s) 53, 362
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 3 cut(s) 360, 558, 622
SfaNI GCATC 4 cut(s) 325, 499, 625, 699
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 537
SmoI CTYRAG 1 cut(s) 537
SphI GCATGC 1 cut(s) 149
Sse9I AATT 3 cut(s) 6, 549, 697
SspMI CTAG 1 cut(s) 600
StyD4I CCNGG 3 cut(s) 358, 556, 620
TaaI ACNGT 3 cut(s) 95, 175, 496
TaqI TCGA 1 cut(s) 34
TasI AATT 3 cut(s) 6, 549, 697
TfiI GAWTC 1 cut(s) 435
Tru1I TTAA 2 cut(s) 294, 348
Tru9I TTAA 2 cut(s) 294, 348
TscAI CASTG 2 cut(s) 501, 673
TseI GCWGC 3 cut(s) 446, 617, 706
TspDTI ATGAA 2 cut(s) 601, 619
TspRI CASTG 2 cut(s) 501, 673
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 348
XceI RCATGY 1 cut(s) 149
XspI CTAG 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.