Rh6AG128900

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000659
Physical Location & Seq
Reverse (-)
19425358 .. 19428452
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG128900.1

Sequence Viewer

Length: 405 bp
ATGGAGGTTGAACAGGGAAAGACTTACCTGCTACGGATCATCAATGCTGCACTCAATGACGAGCTATTCTTTGCCATAGCCGGCCACAACTTGACAGTGGTAGAGATTGATGCAGTCTATACCAAACCATTTACATCTCAGGCAATACTAATAGCACCAGGCCAGACCACCAATGTTCTTGTTCAGGCAAACCAAGTCCCCAATAGATACTTCATGGCTGCAAGGCCATTCATGGATGCACCTCTTTCCATAGACAATAAGTCCGCCACTGCAATCCTTCAATATAAAGGCATCTCCAATTCTGTTCTGCCAGTTCTTTCCCAACTTCCAGCACTCAATGACACAGCTTTTGTGCTGAGCTACAATGCAAAGCTGAGAAGCCTAAACACAGCAAACCATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

134

Amino Acids

14.65

Weight (kDa)

6.71

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 2 - 97 1.9e-32 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AciI CCGC 1 cut(s) 264
AclWI GGATC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 82
AgsI TTSAA 2 cut(s) 11, 281
AhdI GACNNNNNGTC 1 cut(s) 259
AjnI CCWGG 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 4 cut(s) 64, 347, 360, 373
AluI AGCT 4 cut(s) 64, 347, 360, 373
AlwI GGATC 1 cut(s) 44
AoxI GGCC 3 cut(s) 82, 160, 224
ApeKI GCWGC 2 cut(s) 47, 218
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
BbvI GCAGC 2 cut(s) 34, 205
BciT130I CCWGG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 36
BisI GCNGC 2 cut(s) 48, 219
BlpI GCTNAGC 1 cut(s) 356
BlsI GCNGC 2 cut(s) 49, 220
Bme1390I CCNGG 1 cut(s) 159
BmeRI GACNNNNNGTC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 3 cut(s) 100, 226, 300
Bpu1102I GCTNAGC 1 cut(s) 356
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 241, 397
BseMII CTCAG 3 cut(s) 152, 347, 365
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 34, 205
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 3 cut(s) 84, 162, 226
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 3 cut(s) 84, 162, 226
Bsp143I GATC 1 cut(s) 36
Bsp1720I GCTNAGC 1 cut(s) 356
BspACI CCGC 1 cut(s) 264
BspANI GGCC 3 cut(s) 84, 162, 226
BspCNI CTCAG 3 cut(s) 151, 348, 366
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 138, 356, 374
BstF5I GGATG 2 cut(s) 241, 397
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 34, 205
BsuRI GGCC 3 cut(s) 84, 162, 226
BtsCI GGATG 2 cut(s) 241, 397
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 102, 267
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 80
CviAII CATG 2 cut(s) 214, 232
DdeI CTNAG 3 cut(s) 138, 356, 374
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DriI GACNNNNNGTC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 82
Eam1105I GACNNNNNGTC 1 cut(s) 259
EciI GGCGGA 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 217, 235
FaiI YATR 6 cut(s) 77, 120, 215, 233, 251, 285
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 213, 231
Fnu4HI GCNGC 2 cut(s) 48, 219
FokI GGATG 2 cut(s) 248, 384
Fsp4HI GCNGC 2 cut(s) 48, 219
GluI GCNGC 2 cut(s) 48, 219
HaeIII GGCC 3 cut(s) 84, 162, 226
HapII CCGG 1 cut(s) 81
Hin1II CATG 2 cut(s) 217, 235
HpaII CCGG 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 6 cut(s) 50, 113, 221, 239, 272, 368
HpyF3I CTNAG 3 cut(s) 138, 356, 374
Hsp92II CATG 2 cut(s) 217, 235
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 9 cut(s) 41, 94, 125, 144, 170, 171, 176, 324, 342
Lsp1109I GCAGC 2 cut(s) 34, 205
LweI GCATC 3 cut(s) 100, 226, 300
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MluCI AATT 1 cut(s) 298
MnlI CCTC 1 cut(s) 252
MroNI GCCGGC 1 cut(s) 80
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
NaeI GCCGGC 1 cut(s) 82
NdeII GATC 1 cut(s) 36
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 217, 235
PdiI GCCGGC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 49, 220
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
SatI GCNGC 2 cut(s) 48, 219
Sau3AI GATC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 159
SetI ASST 7 cut(s) 9, 30, 66, 244, 349, 362, 375
SfaNI GCATC 3 cut(s) 100, 226, 300
Sse9I AATT 1 cut(s) 298
SsiI CCGC 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 97
TasI AATT 1 cut(s) 298
TscAI CASTG 2 cut(s) 102, 274
TseI GCWGC 2 cut(s) 47, 218
TspDTI ATGAA 2 cut(s) 202, 220
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 2 cut(s) 102, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.