RchiOBHm_Chr6g0264361

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000659
Physical Location & Seq
Forward (+)
19506988 .. 19507614
627 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23710

Sequence Viewer

Length: 426 bp
ATGTCAGATGCACATACCATTAATTTGAAGCCAGGGCCGCTCTTTCCATGTTCTGAAAAACATACCTTTGTAATGGAGGTTGAACAGGGAAAGACTTACCTGCTACGGATAGTCAATGCTGAACTCAATGATGAACTATTCTTTGCAATTGCTGGCCACAACTTGACAGTGGTAGAGGTTGATGCAGTCTATACCAAACCATTTACATCTCAGACAATACTAATTGCACCAGGCCAGACCACAAATGTTCTTTTTCGGGCAAACCAAGTCCCTAGTAGATACTTCATGGCTGCAAGGTCATTCATGGATGCACCTCTTTCCGTAGACAATAAAACTGCCACTGCAATCCTACAATATAAAGGCATCCCTAATTGCTGCCAGTCCTTTCCCAACTTCCAGCACTCAATGACACAGCTTTTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

141

Amino Acids

15.79

Weight (kDa)

6.39

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 2 - 121 1.4e-36 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 324
AciI CCGC 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 154
AfaI GTAC 1 cut(s) 422
AgsI TTSAA 2 cut(s) 28, 83
AjnI CCWGG 2 cut(s) 31, 229
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
AoxI GGCC 3 cut(s) 35, 154, 232
ApeKI GCWGC 2 cut(s) 290, 375
ArsI GACNNNNNNTTYG 1 cut(s) 400
AseI ATTAAT 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 35
BalI TGGCCA 1 cut(s) 156
BbvI GCAGC 2 cut(s) 277, 362
BciT130I CCWGG 2 cut(s) 33, 231
BfaI CTAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 108
BisI GCNGC 3 cut(s) 38, 291, 376
BlsI GCNGC 3 cut(s) 39, 292, 377
Bme1390I CCNGG 2 cut(s) 33, 231
BmgT120I GGNCC 1 cut(s) 35
BmrFI CCNGG 2 cut(s) 33, 231
BmsI GCATC 3 cut(s) 172, 298, 372
BsaJI CCNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 379
BseBI CCWGG 2 cut(s) 33, 231
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 313, 363
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 379
BseXI GCAGC 2 cut(s) 277, 362
BshFI GGCC 3 cut(s) 37, 156, 234
BslFI GGGAC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 37, 156, 234
BspACI CCGC 1 cut(s) 38
BspANI GGCC 3 cut(s) 37, 156, 234
BspCNI CTCAG 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 32
Bst2UI CCWGG 2 cut(s) 33, 231
Bst4CI ACNGT 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 313, 363
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 2 cut(s) 33, 231
BstSCI CCNGG 2 cut(s) 31, 229
BstV1I GCAGC 2 cut(s) 277, 362
BsuRI GGCC 3 cut(s) 37, 156, 234
BtsCI GGATG 2 cut(s) 313, 363
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 174, 339
BveI ACCTGC 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 421
CviAII CATG 3 cut(s) 48, 286, 304
CviJI RGCY 6 cut(s) 31, 37, 156, 234, 290, 415
CviKI_1 RGCY 6 cut(s) 31, 37, 156, 234, 290, 415
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 154
EcoRII CCWGG 2 cut(s) 31, 229
FaeI CATG 3 cut(s) 51, 289, 307
FaiI YATR 7 cut(s) 15, 49, 63, 192, 287, 305, 357
FaqI GGGAC 1 cut(s) 254
FatI CATG 3 cut(s) 47, 285, 303
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 3 cut(s) 38, 291, 376
FokI GGATG 2 cut(s) 320, 350
Fsp4HI GCNGC 3 cut(s) 38, 291, 376
FspBI CTAG 1 cut(s) 273
GluI GCNGC 3 cut(s) 38, 291, 376
HaeIII GGCC 3 cut(s) 37, 156, 234
Hin1II CATG 3 cut(s) 51, 289, 307
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 7, 55, 213
Hpy8I GTNNAC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 7 cut(s) 11, 146, 185, 227, 293, 311, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 3 cut(s) 51, 289, 307
Lsp1109I GCAGC 2 cut(s) 277, 362
LweI GCATC 3 cut(s) 172, 298, 372
MaeI CTAG 1 cut(s) 273
MbiI CCGCTC 1 cut(s) 40
MfeI CAATTG 1 cut(s) 147
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 4 cut(s) 22, 147, 222, 370
MluNI TGGCCA 1 cut(s) 156
MnlI CCTC 3 cut(s) 70, 169, 324
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
MseI TTAA 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 33, 231
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 2 cut(s) 33, 231
MwoI GCNNNNNNNGC 1 cut(s) 37
NlaIII CATG 3 cut(s) 51, 289, 307
PkrI GCNGC 3 cut(s) 39, 292, 377
PshBI ATTAAT 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 31, 229
PspGI CCWGG 2 cut(s) 31, 229
PspPI GGNCC 1 cut(s) 35
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 3 cut(s) 38, 291, 376
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 2 cut(s) 33, 231
SetI ASST 7 cut(s) 68, 81, 102, 180, 299, 316, 417
SfaNI GCATC 3 cut(s) 172, 298, 372
Sse9I AATT 4 cut(s) 22, 147, 222, 370
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 31, 229
TaaI ACNGT 1 cut(s) 169
TasI AATT 4 cut(s) 22, 147, 222, 370
TatI WGTACW 1 cut(s) 420
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 174, 346
TseI GCWGC 2 cut(s) 290, 375
TspDTI ATGAA 3 cut(s) 147, 274, 292
TspGWI ACGGA 2 cut(s) 121, 310
TspRI CASTG 2 cut(s) 174, 346
VspI ATTAAT 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.