RchiOBHm_Chr6g0264311

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000659
Physical Location & Seq
Forward (+)
19497399 .. 19498281
883 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23705

Sequence Viewer

Length: 582 bp
ATGGCAAAAAGCAACAACTTCTTCTGGGCATTCTTACGTCTCTTCTCATGTTCAGTTGCGTTCTTTTTCATTCCAGCCAAAGCTGCATTGAAGACCTACCAGTTCGATATTCAAGTGAAGAATGTGAGCAGGTTGTGCCATTCTAAGCCAATTGTTACAGTTAATGGGATGTTCCCTGGACCTACAATCTATGCTAGAGAAGGCAATACACTTCTAGTTAATGTTACCAACCATGCACGGTATAACATGTCAATTCATTGGCATGGTCTAAGGCAATATTATAGAAATGGGTGGGCAGATGGACCTGCTTATATAACACAATGTCCGATCAAGACTGGAAACTTTTACACCTACAATATGACAATCACAGGGCAAACAGGAACTCTATGGTGGCATGCTCACATATTTTGGCTGAGAGCCACTGTCTATGGAGCAATTGTCATCGTGCCTAGACAGGGGACTGGCTTTCCTTTTCCTCAGCCTTACAGAGAAACTAATCTTGTGTTGGGAGAATGGTGGAATAACGATGTTGAAGAGTTGTTAAACAAGGGAACAGACTGGGATTGCCTCCGAATATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

193

Amino Acids

22.36

Weight (kDa)

9.28

Isoelectric Point (pI)

26.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 37 - 152 1e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 120, 313
AfiI CCNNNNNNNGG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 91, 113, 533
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 83
AspS9I GGNCC 2 cut(s) 179, 302
AvaII GGWCC 2 cut(s) 179, 302
BbsI GAAGAC 1 cut(s) 98
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 44
BfaI CTAG 3 cut(s) 195, 215, 450
BfuAI ACCTGC 2 cut(s) 120, 313
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 2 cut(s) 179, 302
BmgT120I GGNCC 2 cut(s) 179, 302
BmrFI CCNGG 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 568
BmuI ACTGGG 1 cut(s) 568
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse1I ACTGG 4 cut(s) 100, 340, 466, 563
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMII CTCAG 2 cut(s) 404, 491
BseNI ACTGG 4 cut(s) 100, 340, 466, 563
BseXI GCAGC 1 cut(s) 70
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 472
BsmI GAATGC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 405, 490
BspMI ACCTGC 2 cut(s) 120, 313
BsrI ACTGG 4 cut(s) 100, 340, 466, 563
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 3 cut(s) 160, 240, 424
Bst6I CTCTTC 2 cut(s) 47, 528
BstAPI GCANNNNNTGC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 4 cut(s) 144, 269, 413, 477
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 2 cut(s) 83, 135
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 2 cut(s) 250, 398
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 2 cut(s) 120, 313
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 179, 302
CviAII CATG 5 cut(s) 48, 233, 247, 263, 395
CviJI RGCY 7 cut(s) 77, 83, 148, 412, 419, 465, 481
CviKI_1 RGCY 7 cut(s) 77, 83, 148, 412, 419, 465, 481
DdeI CTNAG 4 cut(s) 144, 269, 413, 477
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 47, 528
EarI CTCTTC 2 cut(s) 47, 528
Eco47I GGWCC 2 cut(s) 179, 302
EcoRII CCWGG 1 cut(s) 175
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 5 cut(s) 51, 236, 250, 266, 398
FaqI GGGAC 1 cut(s) 472
FatI CATG 5 cut(s) 47, 232, 246, 262, 394
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 3 cut(s) 195, 215, 450
GluI GCNGC 1 cut(s) 84
Hin1II CATG 5 cut(s) 51, 236, 250, 266, 398
Hpy188I TCNGA 2 cut(s) 327, 572
Hpy188III TCNNGA 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 3 cut(s) 160, 240, 424
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 86, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 135
HpyF3I CTNAG 4 cut(s) 144, 269, 413, 477
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 5 cut(s) 51, 236, 250, 266, 398
Kzo9I GATC 1 cut(s) 327
LmnI GCTCC 1 cut(s) 431
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 3 cut(s) 195, 215, 450
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 2 cut(s) 154, 223
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 5 cut(s) 13, 34, 103, 130, 545
MfeI CAATTG 2 cut(s) 150, 435
MluCI AATT 3 cut(s) 150, 252, 435
MnlI CCTC 2 cut(s) 486, 578
MseI TTAA 3 cut(s) 162, 219, 542
MslI CAYNNNNRTG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 2 cut(s) 150, 435
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 83, 135
NdeII GATC 1 cut(s) 327
NlaIII CATG 5 cut(s) 51, 236, 250, 266, 398
NspI RCATGY 2 cut(s) 250, 398
PaeI GCATGC 1 cut(s) 398
PciI ACATGT 1 cut(s) 246
PctI GAATGC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 85
PscI ACATGT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspPI GGNCC 2 cut(s) 179, 302
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 3 cut(s) 162, 219, 542
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 327
Sau96I GGNCC 2 cut(s) 179, 302
ScrFI CCNGG 1 cut(s) 177
SetI ASST 7 cut(s) 40, 85, 98, 134, 184, 307, 353
SinI GGWCC 2 cut(s) 179, 302
SmiMI CAYNNNNRTG 1 cut(s) 261
SphI GCATGC 1 cut(s) 398
Sse9I AATT 3 cut(s) 150, 252, 435
SspI AATATT 1 cut(s) 278
SspMI CTAG 3 cut(s) 195, 215, 450
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 160, 240, 424
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 105
TasI AATT 3 cut(s) 150, 252, 435
Tru1I TTAA 3 cut(s) 162, 219, 542
Tru9I TTAA 3 cut(s) 162, 219, 542
TscAI CASTG 1 cut(s) 427
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 58, 245
TspRI CASTG 1 cut(s) 427
VpaK11BI GGWCC 2 cut(s) 179, 302
XceI RCATGY 2 cut(s) 250, 398
XspI CTAG 3 cut(s) 195, 215, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.