RLG00000014265

Belongs to the multicopper oxidase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000659
Physical Location & Seq
Reverse (-)
50149371 .. 50150281
911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014265

Sequence Viewer

Length: 519 bp
ATGGCAAAAAGCAACAACTTCTGCTGGGCATTCTTACGTCTCTTCTCATGTTCAGAGGCGTTCTTTTTCATTCCATCCAAAGCTGCATTGAAGACCTACCAGTTCGATATTCAAGTGAAGAATGTGAGCAGGTTGTGCCATTCTAAGCCAATTGTTACAGTTAATGCACTACAAAAAAACCTGGTGAATTTATTTTCCAGGCATGGTCCAAGGCAATATTATAGAAATGGGTGGGCAGATGGACCTGCTTATATAACACAATGTCCGATCAAGACTGGAAACTTTTACACCTACAATATGACAATCACAGGGCAAAGAGGAACTCTATGGTGGCATGCTCACATATTTTGGCTGAGAGCCACTGTCTATGGAGCAATTGTCATCCTGCCCAGACAGGGGACTGGCTTTCCTTTTCCTCAGCCTTACAGAGAAACTAATCTCGTGTTACGAGAATGGTGGAATAACGATGTTGAAGAGGTTGTTAAACAAGGGAACAGATTGGGATTGCCTCCGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3 Pectinesterase

Protein Analysis

173

Amino Acids

19.99

Weight (kDa)

9.83

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 54 - 132 2.2e-18 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 120, 253
AcsI RAATTY 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 395, 396
AgsI TTSAA 3 cut(s) 91, 113, 473
AjnI CCWGG 2 cut(s) 180, 197
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 206, 242
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 2 cut(s) 206, 242
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 98
BbvCI CCTCAGC 1 cut(s) 417
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 82, 233
BciT130I CCWGG 2 cut(s) 182, 199
BcoDI GTCTC 1 cut(s) 44
BfuAI ACCTGC 2 cut(s) 120, 253
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 182, 199
Bme18I GGWCC 2 cut(s) 206, 242
BmgT120I GGNCC 2 cut(s) 206, 242
BmrFI CCNGG 2 cut(s) 182, 199
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 396
Bse1I ACTGG 3 cut(s) 100, 280, 406
BseBI CCWGG 2 cut(s) 182, 199
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 74, 381
BseLI CCNNNNNNNGG 2 cut(s) 395, 396
BseMII CTCAG 2 cut(s) 344, 431
BseNI ACTGG 3 cut(s) 100, 280, 406
BseXI GCAGC 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 24
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 2 cut(s) 395, 396
BsmAI GTCTC 1 cut(s) 44
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 1 cut(s) 412
BsmI GAATGC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 267
BspCNI CTCAG 2 cut(s) 345, 430
BspMI ACCTGC 2 cut(s) 120, 253
BsrI ACTGG 3 cut(s) 100, 280, 406
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 2 cut(s) 182, 199
Bst4CI ACNGT 2 cut(s) 160, 364
Bst6I CTCTTC 2 cut(s) 47, 468
BstAPI GCANNNNNTGC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 3 cut(s) 144, 353, 417
BstF5I GGATG 2 cut(s) 74, 381
BstKTI GATC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 2 cut(s) 182, 199
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 2 cut(s) 180, 197
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 74, 381
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 2 cut(s) 120, 253
Cac8I GCNNGC 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 206, 242
CsiI ACCWGGT 1 cut(s) 180
CviAII CATG 3 cut(s) 48, 203, 335
CviJI RGCY 6 cut(s) 83, 148, 352, 359, 405, 421
CviKI_1 RGCY 6 cut(s) 83, 148, 352, 359, 405, 421
DdeI CTNAG 3 cut(s) 144, 353, 417
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 47, 468
EarI CTCTTC 2 cut(s) 47, 468
Eco130I CCWWGG 1 cut(s) 209
Eco47I GGWCC 2 cut(s) 206, 242
EcoRII CCWGG 2 cut(s) 180, 197
EcoT14I CCWWGG 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 209
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 3 cut(s) 51, 206, 338
FaqI GGGAC 1 cut(s) 412
FatI CATG 3 cut(s) 47, 202, 334
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 61, 368
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
GsaI CCCAGC 1 cut(s) 28
Hin1II CATG 3 cut(s) 51, 206, 338
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 3 cut(s) 55, 267, 513
Hpy188III TCNNGA 1 cut(s) 271
HpyCH4III ACNGT 2 cut(s) 160, 364
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 86, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 3 cut(s) 144, 353, 417
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 3 cut(s) 51, 206, 338
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 371
Lsp1109I GCAGC 1 cut(s) 70
MabI ACCWGGT 1 cut(s) 180
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 2 cut(s) 154, 444
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 4 cut(s) 34, 103, 130, 485
MfeI CAATTG 2 cut(s) 150, 375
MluCI AATT 4 cut(s) 150, 187, 375, 514
MnlI CCTC 5 cut(s) 49, 311, 426, 469, 519
MseI TTAA 3 cut(s) 162, 483, 517
MspR9I CCNGG 2 cut(s) 182, 199
MunI CAATTG 2 cut(s) 150, 375
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 2 cut(s) 182, 199
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 1 cut(s) 267
NlaIII CATG 3 cut(s) 51, 206, 338
NspI RCATGY 1 cut(s) 338
PaeI GCATGC 1 cut(s) 338
PctI GAATGC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 180, 197
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 2 cut(s) 180, 197
PspPI GGNCC 2 cut(s) 206, 242
SaqAI TTAA 3 cut(s) 162, 483, 517
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 2 cut(s) 206, 242
ScrFI CCNGG 2 cut(s) 182, 199
SetI ASST 8 cut(s) 40, 85, 98, 134, 183, 247, 293, 480
SexAI ACCWGGT 1 cut(s) 180
SinI GGWCC 2 cut(s) 206, 242
SphI GCATGC 1 cut(s) 338
Sse9I AATT 4 cut(s) 150, 187, 375, 514
SspI AATATT 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 180, 197
StyI CCWWGG 1 cut(s) 209
TaaI ACNGT 2 cut(s) 160, 364
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 105
TasI AATT 4 cut(s) 150, 187, 375, 514
Tru1I TTAA 3 cut(s) 162, 483, 517
Tru9I TTAA 3 cut(s) 162, 483, 517
TscAI CASTG 1 cut(s) 367
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 58
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 2 cut(s) 206, 242
XapI RAATTY 1 cut(s) 187
XceI RCATGY 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.