RLG00000014267

Belongs to the multicopper oxidase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
50159022 .. 50161470
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014267

Sequence Viewer

Length: 711 bp
ATGACTGCACCCCACGGTGCTGGCACACTCGCACATTCAAAAGAGACAGTTTGTACCATACTGGATTTCCGTGTCAAACAGAAACATCTGGTGGATTTATTTTCCAGGCATGGTCTAAGGCAATATTATAGAAATGGGTGGGCAGATGGACCTGCTTATATAACACAATGTCCGATCAAGACTGGAAACTTTTACACCTACAATATGACAATCACAGGGCAAAGAGGAACTCTATGGTGGCATGCTCACATATTTTGGCTGAGAGCCACTGTCTATGGAGCAATTGTCATCCTGCCCAAACAGGGGACTGGCTTTCCTTTTCCTCAGCCTTACAGAGAAACTAATCTCGTGTTAGGAGAATGGTGGAATAACGATGTTGAAAAGGTTGTTAAACAAGGGAATAGACTAGGATTGCCTCCGAATAAGTCAGATGCACATACCATTAATGGGAAGCAAGGGCCGCTCTTCCCATATTCTGATGAAAAACATACCTTTGCAATGGAGGTTGAACAGCAAAAGACTTACTTGCTACAGATCATCAATGTTGCACTCAATGACGAGCTATTCTTTACAATTGCTGGCCACAATTTGACATTCAAGAGGAAGCTCAGAGAGCCCAAGGGGGAGATTGTCACTCTTGGACCTGCTGTCCATGTGGAGAGTATGTACATTTTTGGTGTCGCGCGCTCACATCTTTGCCTCGTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

237

Amino Acids

26.91

Weight (kDa)

9.3

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 36 - 101 2.4e-18 Multicopper oxidase
Cu-oxidase PF00394 114 - 198 8.6e-19 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03260
fragaria_vesca FvH4_1g13060 FvH4_2g08670 FvH4_2g08670 FvH4_2g08670 FvH4_2g08840 FvH4_2g08860 FvH4_2g09061
malus_domestica MD02G1145100.v1.1 MD05G1064600.v1.1 MD10G1073700.v1.1 MD15G1258600.v1.1 MD15G1259300.v1.1
prunus_persica Prupe.6G177700_v2.0.a1 Prupe.7G156500_v2.0.a1 Prupe.8G095000_v2.0.a1 Prupe.8G095400_v2.0.a1 Prupe.8G097000_v2.0.a1
pyrus_communis pycom02g11490 pycom05g05550 pycom15g22710
rosa_chinensis RchiOBHm_Chr2g0101231 RchiOBHm_Chr6g0264061 RchiOBHm_Chr6g0264101 RchiOBHm_Chr6g0264311 RchiOBHm_Chr6g0264361 RchiOBHm_Chr6g0264441 RchiOBHm_Chr6g0264891
rosa_laevigata RLG00000014229 RLG00000014253 RLG00000014265 RLG00000014267 RLG00000014269 RLG00000014291 RLG00000014292 RLG00000014316 RLG00000017063
rosa_multiflora Rmu_co8391921.1_g000001 Rmu_co8519839.1_g000001 Rmu_sc0000546.1_g000055 Rmu_sc0002305.1_g000003 Rmu_sc0004470.1_g000004 Rmu_sc0006314.1_g000014 Rmu_sc0009807.1_g000001 Rmu_sc0010483.1_g000004
rosa_roxburghii Rroxscaffold_175G00432050 Rroxscaffold_176G00431400 Rroxscaffold_176G00431740 Rroxscaffold_176G00431790 Rroxscaffold_7G00203140 Rroxscaffold_7G00203620
rosa_rugosa Rorug02G0100200 Rorug06G0007600 Rorug06G0012500 Rorug06G0012600 Rorug06G0014100
rosa_samantha Rh2BG150700 Rh2DG150800 Rh6AG128900 Rh6AG131700 Rh6BG124500 Rh6BG124800 Rh6BG128400 Rh6BG129400 Rh6BG132600 Rh6CG123100 Rh6DG110500 Rh6DG113900 Rh6DG114900 Rh6DG118200
rosa_wichuraiana Rw2G011330 Rw6G011140 Rw6G011160 Rw6G011480 Rw6G011540 Rw6G011680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 160, 652
AccBSI CCGCTC 1 cut(s) 463
AccII CGCG 2 cut(s) 683, 685
AciI CCGC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 580
AfaI GTAC 2 cut(s) 55, 668
AfiI CCNNNNNNNGG 3 cut(s) 302, 303, 447
AgsI TTSAA 5 cut(s) 39, 380, 509, 598, 707
AhdI GACNNNNNGTC 1 cut(s) 647
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 2 cut(s) 562, 607
AluI AGCT 2 cut(s) 562, 607
Alw26I GTCTC 1 cut(s) 38
AoxI GGCC 2 cut(s) 458, 580
AseI ATTAAT 1 cut(s) 444
AspLEI GCGC 2 cut(s) 685, 687
AspS9I GGNCC 3 cut(s) 149, 458, 641
AvaII GGWCC 2 cut(s) 149, 641
BalI TGGCCA 1 cut(s) 582
BanII GRGCYC 1 cut(s) 618
BauI CACGAG 1 cut(s) 347
BbvCI CCTCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 530
BfuAI ACCTGC 2 cut(s) 160, 652
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 2 cut(s) 149, 641
BmeRI GACNNNNNGTC 1 cut(s) 647
BmgT120I GGNCC 3 cut(s) 149, 458, 641
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 421
Bpu10I CCTNAGC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 13, 618
BsaXI ACNNNNNCTCC 4 cut(s) 270, 300, 650, 680
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 303, 447
Bse1I ACTGG 3 cut(s) 66, 187, 313
Bse3DI GCAATG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 13, 618
BseGI GGATG 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 302, 303, 447
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 3 cut(s) 251, 338, 622
BseNI ACTGG 3 cut(s) 66, 187, 313
BsePI GCGCGC 1 cut(s) 683
Bsh1236I CGCG 2 cut(s) 683, 685
BshFI GGCC 2 cut(s) 460, 582
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 3 cut(s) 302, 303, 447
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 2 cut(s) 460, 582
Bsp1286I GDGCHC 1 cut(s) 618
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 2 cut(s) 174, 534
BspACI CCGC 1 cut(s) 461
BspANI GGCC 2 cut(s) 460, 582
BspCNI CTCAG 3 cut(s) 252, 337, 621
BspFNI CGCG 2 cut(s) 683, 685
BspMI ACCTGC 2 cut(s) 160, 652
BspQI GCTCTTC 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 463
BsrDI GCAATG 1 cut(s) 504
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 3 cut(s) 66, 187, 313
BssECI CCNNGG 2 cut(s) 13, 618
BssHII GCGCGC 1 cut(s) 683
BssMI GATC 2 cut(s) 174, 534
BssSI CACGAG 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 618
Bst2BI CACGAG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 17, 49, 271
Bst6I CTCTTC 1 cut(s) 470
BstAUI TGTACA 1 cut(s) 666
BstC8I GCNNGC 4 cut(s) 22, 243, 580, 685
BstDEI CTNAG 4 cut(s) 116, 260, 324, 608
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 2 cut(s) 683, 685
BstHHI GCGC 2 cut(s) 685, 687
BstKTI GATC 2 cut(s) 177, 537
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 174, 534
BstMWI GCNNNNNNNGC 2 cut(s) 460, 613
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 530
BstUI CGCG 2 cut(s) 683, 685
BstXI CCANNNNNNTGG 1 cut(s) 20
BsuRI GGCC 2 cut(s) 460, 582
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 267
BveI ACCTGC 2 cut(s) 160, 652
Cac8I GCNNGC 4 cut(s) 22, 243, 580, 685
CfoI GCGC 2 cut(s) 685, 687
Cfr13I GGNCC 3 cut(s) 149, 458, 641
Csp6I GTAC 2 cut(s) 54, 667
CviAII CATG 3 cut(s) 110, 242, 653
CviJI RGCY 9 cut(s) 259, 266, 312, 328, 460, 562, 582, 607, 616
CviKI_1 RGCY 9 cut(s) 259, 266, 312, 328, 460, 562, 582, 607, 616
CviQI GTAC 2 cut(s) 54, 667
DdeI CTNAG 4 cut(s) 116, 260, 324, 608
DpnI GATC 2 cut(s) 176, 536
DpnII GATC 2 cut(s) 174, 534
DriI GACNNNNNGTC 1 cut(s) 647
EaeI YGGCCR 1 cut(s) 580
Eam1104I CTCTTC 1 cut(s) 470
Eam1105I GACNNNNNGTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 470
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 1 cut(s) 618
Eco47I GGWCC 2 cut(s) 149, 641
EcoRII CCWGG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 618
EcoT38I GRGCYC 1 cut(s) 618
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 3 cut(s) 113, 245, 656
FalI AAGNNNNNCTT 2 cut(s) 509, 541
FaqI GGGAC 1 cut(s) 319
FatI CATG 3 cut(s) 109, 241, 652
Fnu4HI GCNGC 1 cut(s) 461
FokI GGATG 1 cut(s) 275
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 1 cut(s) 461
FspBI CTAG 1 cut(s) 407
GlaI GCGC 2 cut(s) 684, 686
GluI GCNGC 1 cut(s) 461
HaeIII GGCC 2 cut(s) 460, 582
HhaI GCGC 2 cut(s) 685, 687
Hin1II CATG 3 cut(s) 113, 245, 656
Hin6I GCGC 2 cut(s) 683, 685
HinP1I GCGC 2 cut(s) 683, 685
Hpy188I TCNGA 5 cut(s) 174, 420, 430, 478, 611
Hpy188III TCNNGA 2 cut(s) 178, 598
HpyCH4III ACNGT 3 cut(s) 17, 49, 271
HpyCH4V TGCA 4 cut(s) 8, 434, 497, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 460, 613
HpyF3I CTNAG 4 cut(s) 116, 260, 324, 608
Hsp92II CATG 3 cut(s) 113, 245, 656
HspAI GCGC 2 cut(s) 683, 685
Kzo9I GATC 2 cut(s) 174, 534
LguI GCTCTTC 1 cut(s) 470
LmnI GCTCC 1 cut(s) 278
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 631
MalI GATC 2 cut(s) 176, 536
MbiI CCGCTC 1 cut(s) 463
MboI GATC 2 cut(s) 174, 534
MboII GAAGA 1 cut(s) 457
MfeI CAATTG 2 cut(s) 282, 573
MhlI GDGCHC 1 cut(s) 618
MlsI TGGCCA 1 cut(s) 582
MluCI AATT 3 cut(s) 282, 573, 586
MluNI TGGCCA 1 cut(s) 582
MnlI CCTC 6 cut(s) 218, 333, 426, 496, 594, 710
Mox20I TGGCCA 1 cut(s) 582
MscI TGGCCA 1 cut(s) 582
MseI TTAA 2 cut(s) 390, 444
Msp20I TGGCCA 1 cut(s) 582
MspR9I CCNGG 1 cut(s) 106
MunI CAATTG 2 cut(s) 282, 573
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 2 cut(s) 683, 685
MwoI GCNNNNNNNGC 2 cut(s) 460, 613
NdeII GATC 2 cut(s) 174, 534
NlaIII CATG 3 cut(s) 113, 245, 656
NmuCI GTSAC 1 cut(s) 631
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PauI GCGCGC 1 cut(s) 683
PciSI GCTCTTC 1 cut(s) 470
PkrI GCNGC 1 cut(s) 462
PshBI ATTAAT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspPI GGNCC 3 cut(s) 149, 458, 641
PteI GCGCGC 1 cut(s) 683
RsaI GTAC 2 cut(s) 55, 668
RsaNI GTAC 2 cut(s) 54, 667
SapI GCTCTTC 1 cut(s) 470
SaqAI TTAA 2 cut(s) 390, 444
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 2 cut(s) 174, 534
Sau96I GGNCC 3 cut(s) 149, 458, 641
ScrFI CCNGG 1 cut(s) 106
SduI GDGCHC 1 cut(s) 618
SetI ASST 8 cut(s) 154, 200, 387, 494, 507, 564, 609, 646
SfaNI GCATC 1 cut(s) 421
SfcI CTRYAG 1 cut(s) 530
SinI GGWCC 2 cut(s) 149, 641
SphI GCATGC 1 cut(s) 245
Sse9I AATT 3 cut(s) 282, 573, 586
SsiI CCGC 1 cut(s) 461
SspI AATATT 1 cut(s) 125
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 3 cut(s) 17, 49, 271
TasI AATT 3 cut(s) 282, 573, 586
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 463
Tru1I TTAA 2 cut(s) 390, 444
Tru9I TTAA 2 cut(s) 390, 444
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 631
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 1 cut(s) 495
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 149, 641
VspI ATTAAT 1 cut(s) 444
XceI RCATGY 1 cut(s) 245
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.