Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002316.1

Orthogroup ID

OG0019191

Physical Location & Seq

Genomic Coordinates Reverse (-)

292569 .. 293307

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002316.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgtcgaagtcgttgaaggttctaatagtcacaaattatggtgtcatgtcagctgaagtgagtaactttacatcattgggttctttatctgagctgaagaggataagattagagcgcatttcagttccttccattaccaagaacaccatacagttgaatagtctacaaaagatatctttattcgtgtgtaacatcgggctagcttttagcaacggttccttcaaatttttcaaggcattcccaagccttaaagaaatcaacattgactattgcagtgatatggtggtattgcctgctgacatctgtcttctaatccatctaaagacgctcagtatcaccgagttgcctgaacacattggtgaaatgtgctgcttagaaaagctcaacatgaggccgtgctcgagattgcacgagctgcctgaatcaattctggttcttgaaacgttaactgatgtgatatgtgatgaatatacaaaagggttatgggaaacttacttgccctgtctcagcaaccacataaagataagggtggtcgaagaggaaatcaacctagattggcttcaaatggttcgctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

192

Amino Acids

21.81

Weight (kDa)

5.83

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019191)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15380 FvH4_1g15380 FvH4_1g15380 FvH4_1g15380
rosa_laevigata	RLG00000009008
rosa_multiflora	Rmu_sc0002316.1_g000060
rosa_roxburghii	Rroxscaffold_5G00347890
rosa_samantha	Rh3BG268900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	163
AclI	AACGTT	1 cut(s)	443
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	2 cut(s)	75, 116
AgsI	TTSAA	6 cut(s)	16, 157, 223, 232, 440, 563
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	5 cut(s)	53, 94, 203, 382, 415
AluI	AGCT	5 cut(s)	53, 94, 203, 382, 415
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	369, 415
ApoI	RAATTY	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	117
AsuHPI	GGTGA	2 cut(s)	328, 371
AsuNHI	GCTAGC	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	400
BauI	CACGAG	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	356, 402
BccI	CCATC	1 cut(s)	324
BceAI	ACGGC	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	2 cut(s)	200, 551
BisI	GCNGC	2 cut(s)	370, 416
BlsI	GCNGC	2 cut(s)	371, 417
BmeT110I	CYCGRG	1 cut(s)	400
BmiI	GGNNCC	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	203
BoxI	GACNNNNGTC	1 cut(s)	303
BpiI	GAAGAC	1 cut(s)	299
BseMII	CTCAG	3 cut(s)	81, 343, 520
BseXI	GCAGC	2 cut(s)	356, 402
BshFI	GGCC	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	394
BsoBI	CYCGRG	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	3 cut(s)	82, 342, 519
BspLI	GGNNCC	1 cut(s)	217
BspOI	GCTAGC	1 cut(s)	203
BssSI	CACGAG	1 cut(s)	410
Bst2BI	CACGAG	1 cut(s)	410
Bst4CI	ACNGT	2 cut(s)	153, 215
Bst6I	CTCTTC	2 cut(s)	92, 531
BstAPI	GCANNNNNTGC	1 cut(s)	415
BstC8I	GCNNGC	2 cut(s)	201, 294
BstDEI	CTNAG	4 cut(s)	90, 329, 373, 506
BstHHI	GCGC	1 cut(s)	117
BstMAI	GTCTC	1 cut(s)	509
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstPAI	GACNNNNGTC	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	356, 402
BstV2I	GAAGAC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	201, 294
CfoI	GCGC	1 cut(s)	117
CseI	GACGC	1 cut(s)	334
CviAII	CATG	2 cut(s)	46, 388
CviJI	RGCY	9 cut(s)	53, 94, 199, 203, 246, 382, 394, 415, 559
CviKI_1	RGCY	9 cut(s)	53, 94, 199, 203, 246, 382, 394, 415, 559
DdeI	CTNAG	4 cut(s)	90, 329, 373, 506
Eam1104I	CTCTTC	2 cut(s)	92, 531
EarI	CTCTTC	2 cut(s)	92, 531
Eco32I	GATATC	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	75, 116
Eco88I	CYCGRG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	174
FaeI	CATG	2 cut(s)	49, 391
FaiI	YATR	9 cut(s)	39, 47, 149, 281, 389, 460, 471, 484, 518
FatI	CATG	2 cut(s)	45, 387
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	370, 416
Fsp4HI	GCNGC	2 cut(s)	370, 416
FspBI	CTAG	2 cut(s)	200, 551
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	2 cut(s)	370, 416
HaeIII	GGCC	1 cut(s)	394
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	49, 391
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HinfI	GANTC	1 cut(s)	422
HpaI	GTTAAC	1 cut(s)	447
HphI	GGTGA	2 cut(s)	328, 371
Hpy166II	GTNNAC	2 cut(s)	164, 447
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	3 cut(s)	402, 437, 576
Hpy8I	GTNNAC	2 cut(s)	164, 447
HpyAV	CCTTC	3 cut(s)	10, 138, 229
HpyCH4III	ACNGT	2 cut(s)	153, 215
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	2 cut(s)	273, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	4 cut(s)	90, 329, 373, 506
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	2 cut(s)	49, 391
HspAI	GCGC	1 cut(s)	115
KspAI	GTTAAC	1 cut(s)	447
LpnPI	CCDG	5 cut(s)	306, 360, 416, 432, 514
Lsp1109I	GCAGC	2 cut(s)	356, 402
MaeI	CTAG	2 cut(s)	200, 551
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	3 cut(s)	28, 62, 188
MboII	GAAGA	3 cut(s)	109, 299, 548
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	3 cut(s)	34, 224, 426
MnlI	CCTC	3 cut(s)	93, 384, 532
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	2 cut(s)	249, 446
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	53
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	415
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	49, 391
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	357
PaeR7I	CTCGAG	1 cut(s)	400
PctI	GAATGC	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	371, 417
PshAI	GACNNNNGTC	1 cut(s)	303
Psp1406I	AACGTT	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	217
PvuII	CAGCTG	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	249, 446
SatI	GCNGC	2 cut(s)	370, 416
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	8 cut(s)	21, 55, 96, 205, 384, 417, 446, 552
Sfr274I	CTCGAG	1 cut(s)	400
SlaI	CTCGAG	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	3 cut(s)	34, 224, 426
SspMI	CTAG	2 cut(s)	200, 551
TaaI	ACNGT	2 cut(s)	153, 215
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	3 cut(s)	5, 401, 534
TasI	AATT	3 cut(s)	34, 224, 426
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	2 cut(s)	249, 446
Tru9I	TTAA	2 cut(s)	249, 446
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	369, 415
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	480
TspRI	CASTG	1 cut(s)	280
XapI	RAATTY	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	2 cut(s)	200, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.