Rh3BG268900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0019191
Physical Location & Seq
Reverse (-)
26147678 .. 26148535
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG268900.1

Sequence Viewer

Length: 858 bp
ATGATATCGGTTGCAGATAGTCTCTTCTCATCAAAATGGCGCGACATACAACTACCGAAAGCTAAAGTTCTAGTTCTGAATTTCCACACAAAGAACTATGCATTGCCCGAATTTGTAGAGAAAATGGAAAAATTGATGGTTCTAATAGTCACAAATTATGGGTTCTTACCAGCTGAAGTGAGTAATTTTACATTGCTGGGTTCTTCATCTAAACTAGAGAGGATAAGATTAGAGCGGATTTTTCTTTCTTCCATTACCAAGAACCCCATAGAGTTGAAGAGACTACAGAAGATATCTTTCTTCATGTGTAACATGGGGCAAGCTTTTAGCAAAGGTTCCATCAAATTTTTTGAGGCATTCCCAGACCTTCAAGAAATCAACATTGACTATTGCAGTGATTTGGTGGAATTACCTGCTGACATCTGTCTTCTAATCCATCTAAAAAAGCTCAGCATCACCAACTGTCATAAGCTATCTGCCTTGCCTGAAATGATTGGAGAGCTGGGCAATTTGGAAGTTTTGAGGTTAAGGTCCTGCTCAGACTTGTCAGAGTTGCCAAGTTCAGTTAGGAAACTCAAAAGGCTAAAGGTTCTCGATGTATCCAATTGCTTCAGCATTAAGGAGTTGCCCGAACACATTGGTGAAATGTGCTGCTTGGAAAAGCTCAACATGAGGCAGTGCTCGAGATTGCAAGAGCTGCCTGAATCAATTTTGGATCTTGAAAGGTTAACTGATGTGATATGTGATGAGGAGACAAAAGGGTTGTGGGAACCTTTGCCCAGTCTCAGCAACAACATACAGATAAGGGTGGTCAAAGAGGAAATCAACCTAGATTGGCTTCAAAAGCTTTACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

285

Amino Acids

32.74

Weight (kDa)

6.17

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 140 - 203 1.6e-10 Leucine-rich repeat region
LRR_14 PF23598 205 - 262 1.5e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019191)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15380 FvH4_1g15380 FvH4_1g15380 FvH4_1g15380
rosa_laevigata RLG00000009008
rosa_multiflora Rmu_sc0002316.1_g000060
rosa_roxburghii Rroxscaffold_5G00347890
rosa_samantha Rh3BG268900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 421
AccBSI CCGCTC 1 cut(s) 235
AccII CGCG 1 cut(s) 42
AciI CCGC 1 cut(s) 235
AclWI GGATC 1 cut(s) 723
AcsI RAATTY 3 cut(s) 79, 110, 344
AcuI CTGAAG 2 cut(s) 195, 595
AgsI TTSAA 4 cut(s) 277, 371, 722, 842
AleI CACNNNNGTG 1 cut(s) 639
AluBI AGCT 9 cut(s) 62, 173, 323, 448, 472, 502, 664, 697, 847
AluI AGCT 9 cut(s) 62, 173, 323, 448, 472, 502, 664, 697, 847
Alw21I GWGCWC 1 cut(s) 683
Alw26I GTCTC 4 cut(s) 26, 274, 746, 788
AlwI GGATC 1 cut(s) 723
Ama87I CYCGRG 1 cut(s) 682
ApeKI GCWGC 2 cut(s) 651, 697
ApoI RAATTY 3 cut(s) 79, 110, 344
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 531
AsuHPI GGTGA 2 cut(s) 448, 653
AvaI CYCGRG 1 cut(s) 682
AvaII GGWCC 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 683
BbvI GCAGC 2 cut(s) 638, 684
BccI CCATC 3 cut(s) 130, 347, 444
BciVI GTATCC 1 cut(s) 610
BcoDI GTCTC 4 cut(s) 26, 274, 746, 788
BfaI CTAG 3 cut(s) 71, 215, 830
BfmI CTRYAG 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 421
BfuI GTATCC 1 cut(s) 610
BisI GCNGC 2 cut(s) 652, 698
BlpI GCTNAGC 1 cut(s) 449
BlsI GCNGC 2 cut(s) 653, 699
Bme18I GGWCC 1 cut(s) 531
BmeT110I CYCGRG 1 cut(s) 682
BmgT120I GGNCC 1 cut(s) 531
BmiI GGNNCC 2 cut(s) 337, 771
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 1 cut(s) 462
BmuI ACTGGG 1 cut(s) 774
BoxI GACNNNNGTC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 419
Bpu1102I GCTNAGC 1 cut(s) 449
Bse1I ACTGG 1 cut(s) 780
Bse3DI GCAATG 2 cut(s) 101, 191
BseMI GCAATG 2 cut(s) 101, 191
BseMII CTCAG 3 cut(s) 463, 552, 799
BseNI ACTGG 1 cut(s) 780
BseRI GAGGAG 1 cut(s) 764
BseXI GCAGC 2 cut(s) 638, 684
BseYI CCCAGC 2 cut(s) 196, 502
Bsh1236I CGCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 683
BsiHKCI CYCGRG 1 cut(s) 682
BsmAI GTCTC 4 cut(s) 26, 274, 746, 788
BsmI GAATGC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 682
Bsp1286I GDGCHC 1 cut(s) 683
Bsp143I GATC 1 cut(s) 715
Bsp1720I GCTNAGC 1 cut(s) 449
BspACI CCGC 1 cut(s) 235
BspCNI CTCAG 3 cut(s) 462, 551, 798
BspFNI CGCG 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 337, 771
BspMI ACCTGC 1 cut(s) 421
BspPI GGATC 1 cut(s) 723
BsrBI CCGCTC 1 cut(s) 235
BsrDI GCAATG 2 cut(s) 101, 191
BsrI ACTGG 1 cut(s) 780
BssMI GATC 1 cut(s) 715
Bst4CI ACNGT 1 cut(s) 464
Bst6I CTCTTC 2 cut(s) 29, 272
BstAPI GCANNNNNTGC 1 cut(s) 697
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 3 cut(s) 449, 538, 785
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 1 cut(s) 718
BstMAI GTCTC 4 cut(s) 26, 274, 746, 788
BstMBI GATC 1 cut(s) 715
BstMWI GCNNNNNNNGC 2 cut(s) 697, 844
BstPAI GACNNNNGTC 1 cut(s) 423
BstSFI CTRYAG 1 cut(s) 284
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 638, 684
BstV2I GAAGAC 1 cut(s) 419
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BsuI GTATCC 1 cut(s) 610
BtsI GCAGTG 2 cut(s) 400, 683
BtsIMutI CAGTG 2 cut(s) 400, 683
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 1 cut(s) 321
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 531
CviAII CATG 3 cut(s) 304, 313, 670
DdeI CTNAG 3 cut(s) 449, 538, 785
DpnI GATC 1 cut(s) 717
DpnII GATC 1 cut(s) 715
Eam1104I CTCTTC 2 cut(s) 29, 272
EarI CTCTTC 2 cut(s) 29, 272
Eco32I GATATC 2 cut(s) 6, 294
Eco47I GGWCC 1 cut(s) 531
Eco57I CTGAAG 2 cut(s) 195, 595
Eco88I CYCGRG 1 cut(s) 682
EcoO109I RGGNCCY 1 cut(s) 531
EcoRV GATATC 2 cut(s) 6, 294
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 3 cut(s) 307, 316, 673
FatI CATG 3 cut(s) 303, 312, 669
Fnu4HI GCNGC 2 cut(s) 652, 698
Fsp4HI GCNGC 2 cut(s) 652, 698
FspBI CTAG 3 cut(s) 71, 215, 830
GlaI GCGC 1 cut(s) 41
GluI GCNGC 2 cut(s) 652, 698
GsaI CCCAGC 2 cut(s) 200, 506
HhaI GCGC 1 cut(s) 42
Hin1II CATG 3 cut(s) 307, 316, 673
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 2 cut(s) 321, 845
HinfI GANTC 1 cut(s) 704
HpaI GTTAAC 1 cut(s) 729
HphI GGTGA 2 cut(s) 448, 653
Hpy166II GTNNAC 1 cut(s) 729
Hpy188I TCNGA 3 cut(s) 78, 541, 550
Hpy188III TCNNGA 5 cut(s) 371, 593, 684, 719, 855
Hpy8I GTNNAC 1 cut(s) 729
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 1 cut(s) 464
HpyCH4V TGCA 4 cut(s) 14, 101, 393, 691
HpyF10VI GCNNNNNNNGC 2 cut(s) 697, 844
HpyF3I CTNAG 3 cut(s) 449, 538, 785
Hsp92II CATG 3 cut(s) 307, 316, 673
HspAI GCGC 1 cut(s) 40
KspAI GTTAAC 1 cut(s) 729
Kzo9I GATC 1 cut(s) 715
LpnPI CCDG 9 cut(s) 182, 183, 375, 426, 488, 498, 547, 714, 793
Lsp1109I GCAGC 2 cut(s) 638, 684
LweI GCATC 1 cut(s) 462
MaeI CTAG 3 cut(s) 71, 215, 830
MaeIII GTNAC 2 cut(s) 148, 308
MalI GATC 1 cut(s) 717
MbiI CCGCTC 1 cut(s) 235
MboI GATC 1 cut(s) 715
MboII GAAGA 7 cut(s) 16, 195, 240, 289, 292, 301, 419
MfeI CAATTG 1 cut(s) 604
MflI RGATCY 1 cut(s) 715
MhlI GDGCHC 1 cut(s) 683
MnlI CCTC 6 cut(s) 213, 346, 516, 666, 742, 811
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 3 cut(s) 527, 618, 728
MslI CAYNNNNRTG 2 cut(s) 34, 639
MspA1I CMGCKG 1 cut(s) 173
MunI CAATTG 1 cut(s) 604
Mva1269I GAATGC 1 cut(s) 356
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 2 cut(s) 697, 844
NdeII GATC 1 cut(s) 715
NlaIII CATG 3 cut(s) 307, 316, 673
NlaIV GGNNCC 2 cut(s) 337, 771
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 639
PaeR7I CTCGAG 1 cut(s) 682
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 704
PkrI GCNGC 2 cut(s) 653, 699
PpuMI RGGWCCY 1 cut(s) 531
PshAI GACNNNNGTC 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 531
PspFI CCCAGC 2 cut(s) 196, 502
PspN4I GGNNCC 2 cut(s) 337, 771
PspPI GGNCC 1 cut(s) 531
PspPPI RGGWCCY 1 cut(s) 531
PsuI RGATCY 1 cut(s) 715
PvuII CAGCTG 1 cut(s) 173
RseI CAYNNNNRTG 2 cut(s) 34, 639
SaqAI TTAA 3 cut(s) 527, 618, 728
SatI GCNGC 2 cut(s) 652, 698
Sau3AI GATC 1 cut(s) 715
Sau96I GGNCC 1 cut(s) 531
SduI GDGCHC 1 cut(s) 683
SfaNI GCATC 1 cut(s) 462
SfcI CTRYAG 1 cut(s) 284
Sfr274I CTCGAG 1 cut(s) 682
SinI GGWCC 1 cut(s) 531
SlaI CTCGAG 1 cut(s) 682
SmiMI CAYNNNNRTG 2 cut(s) 34, 639
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
SsiI CCGC 1 cut(s) 235
SspMI CTAG 3 cut(s) 71, 215, 830
TaaI ACNGT 1 cut(s) 464
TaqI TCGA 2 cut(s) 594, 683
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 3 cut(s) 527, 618, 728
Tru9I TTAA 3 cut(s) 527, 618, 728
TscAI CASTG 2 cut(s) 400, 683
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 651, 697
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 195, 292
TspRI CASTG 2 cut(s) 400, 683
VpaK11BI GGWCC 1 cut(s) 531
XapI RAATTY 3 cut(s) 79, 110, 344
XhoI CTCGAG 1 cut(s) 682
XspI CTAG 3 cut(s) 71, 215, 830
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.