Rroxscaffold_5G00347890

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019191
Physical Location & Seq
Reverse (-)
19585540 .. 19593086
7547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00347890.1

Sequence Viewer

Length: 771 bp
ATGAAGCTACCAAAAGCTGAGGTTCTTGTTCTGCACTTCCAGGCAGAGAGCTACGCCTTACCCAACTTCCTCAAGACAATGTCAAGCTCATTGAAGGTTCTCATAGTCACAAATCATGGTCTCTTGCATGCCAAAGTAGGTAAATTTAAACTGCTGGGTTCTTTATCTAATCTAAAGAGAATAAGATTAGAGGGCATTTCAATTCCTTCCATGAAGAAAAATTCCATGGAAGTAAAGAGTCTACACAAGATATCTTTATTCATGTGCAACTTTGATCAAGCTTCTAGCAAAAGTTCCATCAATATTTTAGAAGCATTTCCAAATCTGGTGGAGATAAACATTGACTATTGCAACAATTTGAAGGAACTGCCTGCCAAGCTCTGTGGTCTTGTAAGTTTAAAGAAGCTCAGTATTAGCAACTGTGACAAACTACATGCCTTGCCTGAAGAGATTGGAGATCTGGTCAATTTAGAAGTGCTAAGGCTATTGGCTTGCATGAAATTGTTACAGTTGCCTTGCTCGATTAGCAAACTCACAGACTTAAAACTTTTTGACTTATCTGATTGCTGGAGCATTAAAAAGTTGCCTGACATTGGTGAAATGCACTTTTTGAAAAAACTCGGAATGAGACACTGCCCAGGGTTGAGAACGCTCCCTCAATCAATTTCGAATTTGCACCAGGAGATGGATGTGATATGTGATGAAGAGACAAAAAAGTTATGGGATGACTTCCCCTATGGCAGTAACATACACATAATTGTCAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

256

Amino Acids

28.85

Weight (kDa)

8.88

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 98 - 183 6.5e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019191)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15380 FvH4_1g15380 FvH4_1g15380 FvH4_1g15380
rosa_laevigata RLG00000009008
rosa_multiflora Rmu_sc0002316.1_g000060
rosa_roxburghii Rroxscaffold_5G00347890
rosa_samantha Rh3BG268900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 685
AccI GTMKAC 1 cut(s) 241
AcsI RAATTY 3 cut(s) 143, 220, 670
AcuI CTGAAG 1 cut(s) 465
AfiI CCNNNNNNNGG 2 cut(s) 593, 685
AgsI TTSAA 4 cut(s) 94, 201, 361, 613
AjnI CCWGG 3 cut(s) 39, 637, 678
AluBI AGCT 7 cut(s) 7, 17, 51, 87, 281, 379, 406
AluI AGCT 7 cut(s) 7, 17, 51, 87, 281, 379, 406
Alw26I GTCTC 3 cut(s) 125, 622, 701
ApoI RAATTY 3 cut(s) 143, 220, 670
Asp700I GAANNNNTTC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 608
AsuII TTCGAA 1 cut(s) 668
BbvCI CCTCAGC 1 cut(s) 18
BccI CCATC 2 cut(s) 305, 679
BciT130I CCWGG 3 cut(s) 41, 639, 680
BclI TGATCA 1 cut(s) 274
BcoDI GTCTC 3 cut(s) 125, 622, 701
BfaI CTAG 1 cut(s) 285
BglII AGATCT 1 cut(s) 457
Bme1390I CCNGG 3 cut(s) 41, 639, 680
BmrFI CCNGG 3 cut(s) 41, 639, 680
BpmI CTGGAG 1 cut(s) 589
Bpu10I CCTNAGC 2 cut(s) 18, 479
Bpu14I TTCGAA 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 225, 637, 638
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 685
BseBI CCWGG 3 cut(s) 41, 639, 680
BseDI CCNNGG 3 cut(s) 225, 637, 638
BseGI GGATG 2 cut(s) 694, 730
BseLI CCNNNNNNNGG 2 cut(s) 593, 685
BseMII CTCAG 2 cut(s) 9, 421
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 593, 685
BsmAI GTCTC 3 cut(s) 125, 622, 701
Bso31I GGTCTC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 668
Bsp143I GATC 2 cut(s) 274, 457
Bsp19I CCATGG 1 cut(s) 225
BspCNI CTCAG 2 cut(s) 10, 420
BspT104I TTCGAA 1 cut(s) 668
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 225, 637, 638
BssMI GATC 2 cut(s) 274, 457
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 3 cut(s) 41, 639, 680
Bst4CI ACNGT 2 cut(s) 422, 510
Bst6I CTCTTC 2 cut(s) 441, 699
BstBI TTCGAA 1 cut(s) 668
BstC8I GCNNGC 3 cut(s) 129, 372, 493
BstDEI CTNAG 3 cut(s) 18, 407, 479
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 694, 730
BstKTI GATC 2 cut(s) 277, 460
BstMAI GTCTC 3 cut(s) 125, 622, 701
BstMBI GATC 2 cut(s) 274, 457
BstMWI GCNNNNNNNGC 2 cut(s) 376, 525
BstNI CCWGG 3 cut(s) 41, 639, 680
BstNSI RCATGY 2 cut(s) 131, 437
BstSCI CCNGG 3 cut(s) 39, 637, 678
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 2 cut(s) 694, 730
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 1 cut(s) 631
Cac8I GCNNGC 3 cut(s) 129, 372, 493
CspCI CAANNNNNGTGG 4 cut(s) 309, 344, 364, 399
CviAII CATG 7 cut(s) 116, 128, 211, 226, 262, 434, 496
CviJI RGCY 9 cut(s) 7, 17, 51, 87, 281, 379, 406, 484, 491
CviKI_1 RGCY 9 cut(s) 7, 17, 51, 87, 281, 379, 406, 484, 491
DdeI CTNAG 3 cut(s) 18, 407, 479
DpnI GATC 2 cut(s) 276, 459
DpnII GATC 2 cut(s) 274, 457
DraI TTTAAA 2 cut(s) 148, 399
Eam1104I CTCTTC 2 cut(s) 441, 699
EarI CTCTTC 2 cut(s) 441, 699
Eco130I CCWWGG 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 465
EcoRII CCWGG 3 cut(s) 39, 637, 678
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 7 cut(s) 119, 131, 214, 229, 265, 437, 499
FatI CATG 7 cut(s) 115, 127, 210, 225, 261, 433, 495
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 241
FokI GGATG 2 cut(s) 701, 737
FspBI CTAG 1 cut(s) 285
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 589
Hin1II CATG 7 cut(s) 119, 131, 214, 229, 265, 437, 499
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 1 cut(s) 238
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 562, 623
Hpy188III TCNNGA 2 cut(s) 73, 763
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 88, 216, 355
HpyCH4III ACNGT 2 cut(s) 422, 510
HpyCH4V TGCA 7 cut(s) 34, 127, 267, 351, 495, 604, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 525
HpyF3I CTNAG 3 cut(s) 18, 407, 479
Hsp92II CATG 7 cut(s) 119, 131, 214, 229, 265, 437, 499
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 2 cut(s) 274, 457
LmnI GCTCC 2 cut(s) 570, 657
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 4 cut(s) 106, 422, 504, 743
MalI GATC 2 cut(s) 276, 459
MboI GATC 2 cut(s) 274, 457
MboII GAAGA 3 cut(s) 226, 458, 716
MflI RGATCY 1 cut(s) 457
MlyI GAGTC 1 cut(s) 247
MnlI CCTC 4 cut(s) 13, 80, 184, 666
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 4 cut(s) 147, 398, 542, 576
MspR9I CCNGG 3 cut(s) 41, 639, 680
MvaI CCWGG 3 cut(s) 41, 639, 680
MwoI GCNNNNNNNGC 2 cut(s) 376, 525
NcoI CCATGG 1 cut(s) 225
NdeII GATC 2 cut(s) 274, 457
NlaIII CATG 7 cut(s) 119, 131, 214, 229, 265, 437, 499
NmuCI GTSAC 2 cut(s) 106, 422
NspI RCATGY 2 cut(s) 131, 437
NspV TTCGAA 1 cut(s) 668
PaeI GCATGC 1 cut(s) 131
PasI CCCWGGG 1 cut(s) 638
PdmI GAANNNNTTC 1 cut(s) 315
PflFI GACNNNGTC 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 685
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
Psp6I CCWGG 3 cut(s) 39, 637, 678
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 3 cut(s) 39, 637, 678
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 79
SaqAI TTAA 4 cut(s) 147, 398, 542, 576
Sau3AI GATC 2 cut(s) 274, 457
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 41, 639, 680
SfuI TTCGAA 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SphI GCATGC 1 cut(s) 131
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 3 cut(s) 39, 637, 678
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 2 cut(s) 422, 510
TaqI TCGA 2 cut(s) 521, 668
Tru1I TTAA 4 cut(s) 147, 398, 542, 576
Tru9I TTAA 4 cut(s) 147, 398, 542, 576
TscAI CASTG 1 cut(s) 638
TseFI GTSAC 2 cut(s) 106, 422
Tsp45I GTSAC 2 cut(s) 106, 422
TspDTI ATGAA 5 cut(s) 17, 227, 250, 512, 717
TspRI CASTG 1 cut(s) 638
Tth111I GACNNNGTC 1 cut(s) 79
Van91I CCANNNNNTGG 1 cut(s) 685
XapI RAATTY 3 cut(s) 143, 220, 670
XceI RCATGY 2 cut(s) 131, 437
XmiI GTMKAC 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.