Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002495.1

Orthogroup ID

OG0021654

Physical Location & Seq

Genomic Coordinates Forward (+)

195598 .. 196077

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002495.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggctgctcaaacaaaggtcttcttggacatgaagatgggaggccagccggccggccgcatcgtcatggagctctacgccgactctaccccacgtaccgccgagaacttccgtgctctctgcaccggcgagaagggcgtagaccgctcgggtaggacctccaccccccgcgtcatcaagaacatcaaggaggttaagtctagccctggaaggaccgccaagaacatcgagaaggttgcgtctagccctcgaaggaccgccgagaacatcgagaaggttaggaccgccaagaacatcgagaaggttaggactgccatgaaggttgtgtctattgctggaaggaccgtcaagaacatcgagaaggttaggaccgccgagaaggttgtgtcgaccgtcaagaacgtcgagaaggttaggaccgccaagaaggttgggtctagcgctggaaggaccgccaagcctgttgtgattgcctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008144 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009735 GO:0009741 GO:0009742 GO:0009755 GO:0009785 GO:0009791 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0010038 GO:0014070 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0030522 GO:0031323 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032870 GO:0033218 GO:0033993 GO:0036211 GO:0042221 GO:0042277 GO:0042325 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071478 GO:0071482 GO:0071483 GO:0071489 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

159

Amino Acids

17.3

Weight (kDa)

10.7

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021654)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002495.1_g000039
rosa_samantha	Rh1AG222200 Rh1CG207000
rosa_wichuraiana	Rw0G014810 Rw1G018930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	2 cut(s)	141, 389
AccII	CGCG	1 cut(s)	171
AcoI	YGGCCR	2 cut(s)	51, 55
AfaI	GTAC	1 cut(s)	97
AfeI	AGCGCT	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	2 cut(s)	75, 118
Ama87I	CYCGRG	1 cut(s)	148
Aor51HI	AGCGCT	1 cut(s)	442
AoxI	GGCC	3 cut(s)	43, 51, 55
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	75, 118
BccI	CCATC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	207
BfaI	CTAG	3 cut(s)	201, 243, 438
BfoI	RGCGCY	1 cut(s)	444
BisI	GCNGC	2 cut(s)	6, 58
BlsI	GCNGC	2 cut(s)	7, 59
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bse118I	RCCGGY	3 cut(s)	49, 53, 125
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	205
BseX3I	CGGCCG	2 cut(s)	51, 55
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	3 cut(s)	54, 58, 393
BshFI	GGCC	3 cut(s)	45, 53, 57
BsiEI	CGRYCG	3 cut(s)	54, 58, 393
BsiHKAI	GWGCWC	2 cut(s)	75, 118
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	50, 54, 126
BsnI	GGCC	3 cut(s)	45, 53, 57
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	75, 118
BspANI	GGCC	3 cut(s)	45, 53, 57
BspFNI	CGCG	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	147
BsrFI	RCCGGY	3 cut(s)	49, 53, 125
BssAI	RCCGGY	3 cut(s)	49, 53, 125
BssECI	CCNNGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	346, 394
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	47, 51, 55
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	443
BstMCI	CGRYCG	3 cut(s)	54, 58, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 144
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	13
BstZI	CGGCCG	2 cut(s)	51, 55
BsuRI	GGCC	3 cut(s)	45, 53, 57
Cac8I	GCNNGC	3 cut(s)	47, 51, 55
CfoI	GCGC	1 cut(s)	443
Cfr10I	RCCGGY	3 cut(s)	49, 53, 125
Cfr13I	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
CseI	GACGC	2 cut(s)	160, 228
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	3 cut(s)	31, 67, 316
CviJI	RGCY	9 cut(s)	5, 45, 49, 53, 57, 73, 204, 246, 460
CviKI_1	RGCY	9 cut(s)	5, 45, 49, 53, 57, 73, 204, 246, 460
CviQI	GTAC	1 cut(s)	96
EaeI	YGGCCR	2 cut(s)	51, 55
EagI	CGGCCG	2 cut(s)	51, 55
Ecl136II	GAGCTC	1 cut(s)	73
EclXI	CGGCCG	2 cut(s)	51, 55
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
Eco47III	AGCGCT	1 cut(s)	442
Eco52I	CGGCCG	2 cut(s)	51, 55
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	3 cut(s)	34, 70, 319
FaiI	YATR	3 cut(s)	32, 68, 317
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	3 cut(s)	30, 66, 315
FauI	CCCGC	1 cut(s)	176
FblI	GTMKAC	2 cut(s)	141, 389
Fnu4HI	GCNGC	2 cut(s)	6, 58
FriOI	GRGCYC	1 cut(s)	75
FseI	GGCCGGCC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	6, 58
FspBI	CTAG	3 cut(s)	201, 243, 438
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	2 cut(s)	6, 58
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	45, 53, 57
HapII	CCGG	3 cut(s)	50, 54, 126
HgaI	GACGC	2 cut(s)	160, 228
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	3 cut(s)	34, 70, 319
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	3 cut(s)	50, 54, 126
Hpy166II	GTNNAC	2 cut(s)	142, 390
Hpy188III	TCNNGA	8 cut(s)	178, 229, 271, 298, 349, 358, 397, 406
Hpy8I	GTNNAC	2 cut(s)	142, 390
Hpy99I	CGWCG	1 cut(s)	407
HpyCH4III	ACNGT	2 cut(s)	346, 394
HpyCH4IV	ACGT	2 cut(s)	94, 402
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 144
HpySE526I	ACGT	2 cut(s)	94, 402
Hsp92II	CATG	3 cut(s)	34, 70, 319
HspAI	GCGC	1 cut(s)	441
KroI	GCCGGC	2 cut(s)	49, 53
KroNI	GCCGGC	2 cut(s)	51, 55
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	9 cut(s)	59, 63, 67, 139, 192, 219, 321, 429, 474
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	3 cut(s)	201, 243, 438
MaeII	ACGT	2 cut(s)	94, 402
MbiI	CCGCTC	1 cut(s)	147
MboII	GAAGA	2 cut(s)	13, 46
MhlI	GDGCHC	2 cut(s)	75, 118
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	4 cut(s)	35, 169, 184, 258
MroNI	GCCGGC	2 cut(s)	49, 53
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	2 cut(s)	35, 65
MspI	CCGG	3 cut(s)	50, 54, 126
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	135, 144
NaeI	GCCGGC	2 cut(s)	51, 55
NgoMIV	GCCGGC	2 cut(s)	49, 53
NlaIII	CATG	3 cut(s)	34, 70, 319
NmeAIII	GCCGAG	3 cut(s)	127, 286, 400
PdiI	GCCGGC	2 cut(s)	51, 55
PkrI	GCNGC	2 cut(s)	7, 59
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
PspPPI	RGGWCCY	1 cut(s)	156
RigI	GGCCGGCC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	2 cut(s)	35, 65
SacI	GAGCTC	1 cut(s)	75
SalI	GTCGAC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	6, 58
Sau96I	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	75, 118
SfaNI	GCATC	1 cut(s)	69
SgrAI	CRCCGGYG	1 cut(s)	125
SinI	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
SmiMI	CAYNNNNRTG	2 cut(s)	35, 65
SspMI	CTAG	3 cut(s)	201, 243, 438
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	346, 394
TaiI	ACGT	2 cut(s)	97, 405
TaqI	TCGA	7 cut(s)	228, 250, 270, 297, 357, 389, 405
TauI	GCSGC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	47, 332
TspGWI	ACGGA	1 cut(s)	101
VpaK11BI	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
XmiI	GTMKAC	2 cut(s)	141, 389
XspI	CTAG	3 cut(s)	201, 243, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.