Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00659

Orthogroup ID

OG0021654

Physical Location & Seq

Genomic Coordinates Forward (+)

10898 .. 11878

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACCATCTGCCCCACCCAAAAAACGACGTCGTCCATCTTCTTCACGAAAAGTCCACCAACCCTATCCAAAAGGACCAAAAGCATATACTCTCACCTTTATATCCACTCCGGTCCCGAAACCCAACCCTGGTTAAACACATCCAACCCAACCCAAACCCCGGTTAACTCATTCCCCGTTCGGATCACCCCACGTGCCCACATCCAACGGCTGAGACGACCTCGCCACAGATATTCACCGCGTAAACCCCTCAAGGATCGTGACCTCGTCCACGCAAATCACAAACCCTATTTCCCCAAATTCTCTGAAACCCTAACTCTCTCTCGATTCCTCGCATCCATGGCTGCTCAAACTAAGGTCTTCTTGGACATGAAGATGGGAGGCCAGCCGGCCGGCCGTATCGTCATGGAGCTCTACGCCGACACTACCCCCCGTACCGCCGAGAACTTCCGTGCTCTCTGCACCGGCGAGAAGGGCGTAGACCGCTCGGGAAGGACCTCCACCCCCCGCGTCGTCAAGAACATCAAGGAGGTTAAGTCTAGCCCTGGAAGGACCGCCAAGAACGCCAAGAACATCGAGAAGGTTGCGTCTAGCCCTCGAAGGACCGCCGAGAACATCGAGAAGGTTAGGACCGCCAAGAACATCGAGAAGGTTAGGACTGCCATGAAGGTTGTGTCTATTGCTGGAAGGACCGTCAAGAACATCGAGAAGGTTAGGACCGCCGAGAAGGTTGTGACCGTCAAGAACATCGAGAAGGTTTGGACCGCCGGGAAGGTTTGGACCGCCGAGAAGGTTGTGACCGTCAAGAATATCGAGAAGGTTAGGACCGCCGAGAAGGTTGTGTCGACCGTCAAGAACGTCGAGAAGGTTAGGACCGCCAAGAAGGTTGGGTCTAGCGCTGGAAGGACCGCCAAGCCTGTTGTGATTGCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016018 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033218 GO:0036211 GO:0042277 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

311

Amino Acids

34.83

Weight (kDa)

10.81

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	122 - 194	9.5e-06	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021654)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002495.1_g000039
rosa_samantha	Rh1AG222200 Rh1CG207000
rosa_wichuraiana	Rw0G014810 Rw1G018930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	486
AccI	GTMKAC	2 cut(s)	480, 845
AccII	CGCG	2 cut(s)	241, 510
AclWI	GGATC	2 cut(s)	191, 264
AcoI	YGGCCR	2 cut(s)	390, 394
AcsI	RAATTY	1 cut(s)	299
AcvI	CACGTG	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	436
AfeI	AGCGCT	1 cut(s)	898
AfiI	CCNNNNNNNGG	2 cut(s)	129, 160
AjnI	CCWGG	2 cut(s)	128, 544
AluBI	AGCT	1 cut(s)	412
AluI	AGCT	1 cut(s)	412
Alw21I	GWGCWC	2 cut(s)	414, 457
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	191, 264
Ama87I	CYCGRG	1 cut(s)	487
Aor51HI	AGCGCT	1 cut(s)	898
AoxI	GGCC	3 cut(s)	382, 390, 394
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	899
AsuC2I	CCSGG	2 cut(s)	161, 769
AsuHPI	GGTGA	3 cut(s)	86, 178, 228
AvaI	CYCGRG	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	414
BbrPI	CACGTG	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	352
Bbv12I	GWGCWC	2 cut(s)	414, 457
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	3 cut(s)	14, 44, 370
BceAI	ACGGC	2 cut(s)	224, 381
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	2 cut(s)	130, 546
BcnI	CCSGG	2 cut(s)	161, 769
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	3 cut(s)	540, 591, 894
BfoI	RGCGCY	1 cut(s)	900
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	4 cut(s)	130, 161, 546, 769
BmeT110I	CYCGRG	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	4 cut(s)	130, 161, 546, 769
BmsI	GCATC	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	352
BplI	GAGNNNNNCTC	2 cut(s)	205, 237
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	161, 769
BsaAI	YACGTR	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	4 cut(s)	128, 159, 339, 544
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 160
Bse118I	RCCGGY	3 cut(s)	388, 392, 464
BseBI	CCWGG	2 cut(s)	130, 546
BseDI	CCNNGG	4 cut(s)	128, 159, 339, 544
BseGI	GGATG	3 cut(s)	140, 201, 335
BseLI	CCNNNNNNNGG	2 cut(s)	129, 160
BseMII	CTCAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	199
BseX3I	CGGCCG	2 cut(s)	390, 394
BseXI	GCAGC	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	445
Bsh1236I	CGCG	2 cut(s)	241, 510
Bsh1285I	CGRYCG	3 cut(s)	393, 397, 849
BshFI	GGCC	3 cut(s)	384, 392, 396
BsiEI	CGRYCG	3 cut(s)	393, 397, 849
BsiHKAI	GWGCWC	2 cut(s)	414, 457
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	6 cut(s)	111, 161, 389, 393, 465, 768
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	129, 160
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	3 cut(s)	384, 392, 396
BsoBI	CYCGRG	1 cut(s)	487
Bsp1286I	GDGCHC	3 cut(s)	199, 414, 457
Bsp143I	GATC	2 cut(s)	183, 256
Bsp19I	CCATGG	1 cut(s)	339
BspANI	GGCC	3 cut(s)	384, 392, 396
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	2 cut(s)	241, 510
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	191, 264
BsrBI	CCGCTC	1 cut(s)	486
BsrFI	RCCGGY	3 cut(s)	388, 392, 464
BssAI	RCCGGY	3 cut(s)	388, 392, 464
BssECI	CCNNGG	4 cut(s)	128, 159, 339, 544
BssMI	GATC	2 cut(s)	183, 256
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	130, 546
Bst4CI	ACNGT	4 cut(s)	694, 739, 802, 850
BstACI	GRCGYC	1 cut(s)	29
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	386, 390, 394
BstDEI	CTNAG	2 cut(s)	212, 354
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	140, 201, 335
BstFNI	CGCG	2 cut(s)	241, 510
BstH2I	RGCGCY	1 cut(s)	900
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	2 cut(s)	186, 259
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	2 cut(s)	183, 256
BstMCI	CGRYCG	3 cut(s)	393, 397, 849
BstMWI	GCNNNNNNNGC	4 cut(s)	341, 474, 483, 563
BstNI	CCWGG	2 cut(s)	130, 546
BstSCI	CCNGG	4 cut(s)	128, 159, 544, 767
BstSLI	GKGCMC	1 cut(s)	199
BstUI	CGCG	2 cut(s)	241, 510
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	352
BstZI	CGGCCG	2 cut(s)	390, 394
BsuRI	GGCC	3 cut(s)	384, 392, 396
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	3 cut(s)	140, 201, 335
Cac8I	GCNNGC	3 cut(s)	386, 390, 394
CfoI	GCGC	1 cut(s)	899
Cfr10I	RCCGGY	3 cut(s)	388, 392, 464
CseI	GACGC	2 cut(s)	499, 576
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	4 cut(s)	340, 370, 406, 664
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	2 cut(s)	212, 354
DpnI	GATC	2 cut(s)	185, 258
DpnII	GATC	2 cut(s)	183, 256
EaeI	YGGCCR	2 cut(s)	390, 394
EagI	CGGCCG	2 cut(s)	390, 394
Ecl136II	GAGCTC	1 cut(s)	412
EclXI	CGGCCG	2 cut(s)	390, 394
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	414
Eco47III	AGCGCT	1 cut(s)	898
Eco52I	CGGCCG	2 cut(s)	390, 394
Eco53kI	GAGCTC	1 cut(s)	412
Eco72I	CACGTG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	487
EcoICRI	GAGCTC	1 cut(s)	412
EcoO109I	RGGNCCY	1 cut(s)	495
EcoRII	CCWGG	2 cut(s)	128, 544
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	339
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	4 cut(s)	343, 373, 409, 667
FaiI	YATR	7 cut(s)	86, 88, 102, 341, 371, 407, 665
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	4 cut(s)	339, 369, 405, 663
FauI	CCCGC	1 cut(s)	515
FblI	GTMKAC	2 cut(s)	480, 845
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	3 cut(s)	127, 188, 322
FriOI	GRGCYC	1 cut(s)	414
FseI	GGCCGGCC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	3 cut(s)	540, 591, 894
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	1 cut(s)	345
HaeII	RGCGCY	1 cut(s)	900
HaeIII	GGCC	3 cut(s)	384, 392, 396
HapII	CCGG	6 cut(s)	111, 161, 389, 393, 465, 768
HgaI	GACGC	2 cut(s)	499, 576
HhaI	GCGC	1 cut(s)	899
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	4 cut(s)	343, 373, 409, 667
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HincII	GTYRAC	2 cut(s)	166, 846
HindII	GTYRAC	2 cut(s)	166, 846
HinfI	GANTC	1 cut(s)	327
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	6 cut(s)	111, 161, 389, 393, 465, 768
HphI	GGTGA	3 cut(s)	86, 178, 228
Hpy166II	GTNNAC	6 cut(s)	56, 166, 245, 271, 481, 846
Hpy188I	TCNGA	2 cut(s)	183, 307
Hpy8I	GTNNAC	6 cut(s)	56, 166, 245, 271, 481, 846
Hpy99I	CGWCG	4 cut(s)	31, 34, 515, 863
HpyCH4III	ACNGT	4 cut(s)	694, 739, 802, 850
HpyCH4IV	ACGT	3 cut(s)	29, 193, 858
HpyCH4V	TGCA	1 cut(s)	462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	341, 474, 483, 563
HpyF3I	CTNAG	2 cut(s)	212, 354
HpySE526I	ACGT	3 cut(s)	29, 193, 858
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	4 cut(s)	343, 373, 409, 667
HspAI	GCGC	1 cut(s)	897
KroI	GCCGGC	2 cut(s)	388, 392
KroNI	GCCGGC	2 cut(s)	390, 394
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	183, 256
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	1 cut(s)	344
MaeI	CTAG	3 cut(s)	540, 591, 894
MaeII	ACGT	3 cut(s)	29, 193, 858
MaeIII	GTNAC	3 cut(s)	260, 733, 796
MalI	GATC	2 cut(s)	185, 258
MbiI	CCGCTC	1 cut(s)	486
MboI	GATC	2 cut(s)	183, 256
MboII	GAAGA	4 cut(s)	31, 34, 352, 385
MhlI	GDGCHC	3 cut(s)	199, 414, 457
MluCI	AATT	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	168, 229
MnlI	CCTC	8 cut(s)	231, 260, 275, 341, 374, 508, 523, 606
MroNI	GCCGGC	2 cut(s)	388, 392
MseI	TTAA	3 cut(s)	134, 165, 534
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	6 cut(s)	111, 161, 389, 393, 465, 768
MspR9I	CCNGG	4 cut(s)	130, 161, 546, 769
MvaI	CCWGG	2 cut(s)	130, 546
MvnI	CGCG	2 cut(s)	241, 510
MwoI	GCNNNNNNNGC	4 cut(s)	341, 474, 483, 563
NaeI	GCCGGC	2 cut(s)	390, 394
NciI	CCSGG	2 cut(s)	161, 769
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	2 cut(s)	183, 256
NgoMIV	GCCGGC	2 cut(s)	388, 392
NlaIII	CATG	4 cut(s)	343, 373, 409, 667
NlaIV	GGNNCC	1 cut(s)	115
NmeAIII	GCCGAG	5 cut(s)	466, 634, 748, 811, 856
NmuCI	GTSAC	3 cut(s)	260, 733, 796
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PdiI	GCCGGC	2 cut(s)	390, 394
PfeI	GAWTC	1 cut(s)	327
PflFI	GACNNNGTC	2 cut(s)	31, 266
PkrI	GCNGC	1 cut(s)	346
PmaCI	CACGTG	1 cut(s)	194
PmlI	CACGTG	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	194
PpuMI	RGGWCCY	1 cut(s)	495
Psp124BI	GAGCTC	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	128, 544
PspCI	CACGTG	1 cut(s)	194
PspGI	CCWGG	2 cut(s)	128, 544
PspN4I	GGNNCC	1 cut(s)	115
PspPPI	RGGWCCY	1 cut(s)	495
PsyI	GACNNNGTC	2 cut(s)	31, 266
RigI	GGCCGGCC	1 cut(s)	396
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	414
SalI	GTCGAC	1 cut(s)	844
SaqAI	TTAA	3 cut(s)	134, 165, 534
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	183, 256
ScrFI	CCNGG	4 cut(s)	130, 161, 546, 769
SduI	GDGCHC	3 cut(s)	199, 414, 457
SfaNI	GCATC	1 cut(s)	344
SgrAI	CRCCGGYG	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	299
SspMI	CTAG	3 cut(s)	540, 591, 894
SstI	GAGCTC	1 cut(s)	414
StyD4I	CCNGG	4 cut(s)	128, 159, 544, 767
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	4 cut(s)	694, 739, 802, 850
TaiI	ACGT	3 cut(s)	32, 196, 861
TasI	AATT	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	3 cut(s)	134, 165, 534
Tru9I	TTAA	3 cut(s)	134, 165, 534
TseFI	GTSAC	3 cut(s)	260, 733, 796
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	3 cut(s)	260, 733, 796
TspDTI	ATGAA	2 cut(s)	386, 680
TspGWI	ACGGA	1 cut(s)	440
Tth111I	GACNNNGTC	2 cut(s)	31, 266
XapI	RAATTY	1 cut(s)	299
XmiI	GTMKAC	2 cut(s)	480, 845
XspI	CTAG	3 cut(s)	540, 591, 894
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.