Rh1AG222200

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0021654
Physical Location & Seq
Forward (+)
42362374 .. 42363018
645 bp
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UTR
Exon/CDS
Intron
Rh1AG222200.1

Sequence Viewer

Length: 558 bp
ATGGCTGCTCAAAACCCTAAGGTCTTCTTGGACATGAAGATCGGAGGCCAGCCGGCCGGCCGCATAGTCATGGAGCTCTACGCTGACACTACCCCCCGTACCGCCGAGAACTTCCGTGCTCTCTGCACCGGCGAGAATGGCGTAGACCGCTCGGGAAGGACCTCCACCCCCCGCGTCGTCAAGAACATCAAGGAGGTTAAGTCTAGCCCTGGAAGGACCGCCAAGAACGCCAAGAACATCGAGAAGGTTGCGTCTAGCCGTCGAAGGACCGCCGAGAACATCGAGAAGGTTAGGACCGCCGAGAAGGTTGTGACCGTCAAGAACATCGAGAAGGTTAGGACCGCCGAGAAGGTTGTGACCGTCAAGAACATAGAGAAGGTTTGGACCGCCGGGAAGGTTTGGACCGCCGAGAAGGTTGTGACCGTCAAGAATATCGAGAAGGTTAGGACCGCCGAGAAGGTTGTGTCGACCATCAAGAACGTCGAGAAGGTTAGGACCGCCAAGAAGGTTGGTTCTAGCGCTGGAAGGACCGCCAAGCCTGTTGTGATTGCCTACTGA

Protein Analysis

185

Amino Acids

20.3

Weight (kDa)

10.43

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 9 - 115 2.2e-06 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021654)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002495.1_g000039
rosa_samantha Rh1AG222200 Rh1CG207000
rosa_wichuraiana Rw0G014810 Rw1G018930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 150
AccI GTMKAC 2 cut(s) 144, 467
AccII CGCG 1 cut(s) 174
AcoI YGGCCR 2 cut(s) 54, 58
AfaI GTAC 1 cut(s) 100
AfeI AGCGCT 1 cut(s) 520
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Alw21I GWGCWC 2 cut(s) 78, 121
Ama87I CYCGRG 1 cut(s) 151
Aor51HI AGCGCT 1 cut(s) 520
AoxI GGCC 3 cut(s) 46, 54, 58
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 521
AsuC2I CCSGG 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 151
AxyI CCTNAGG 1 cut(s) 18
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 2 cut(s) 78, 121
BccI CCATC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 243
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 1 cut(s) 210
BcnI CCSGG 1 cut(s) 391
BfaI CTAG 3 cut(s) 204, 255, 516
BfoI RGCGCY 1 cut(s) 522
BisI GCNGC 2 cut(s) 6, 61
BlsI GCNGC 2 cut(s) 7, 62
Bme1390I CCNGG 2 cut(s) 210, 391
BmeT110I CYCGRG 1 cut(s) 151
BmrFI CCNGG 2 cut(s) 210, 391
BpiI GAAGAC 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bse118I RCCGGY 3 cut(s) 52, 56, 128
Bse21I CCTNAGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 208
BseX3I CGGCCG 2 cut(s) 54, 58
BsgI GTGCAG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 174
Bsh1285I CGRYCG 2 cut(s) 57, 61
BshFI GGCC 3 cut(s) 48, 56, 60
BsiEI CGRYCG 2 cut(s) 57, 61
BsiHKAI GWGCWC 2 cut(s) 78, 121
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 4 cut(s) 53, 57, 129, 390
BsnI GGCC 3 cut(s) 48, 56, 60
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 78, 121
Bsp143I GATC 1 cut(s) 39
BspANI GGCC 3 cut(s) 48, 56, 60
BspFNI CGCG 1 cut(s) 174
BsrBI CCGCTC 1 cut(s) 150
BsrFI RCCGGY 3 cut(s) 52, 56, 128
BssAI RCCGGY 3 cut(s) 52, 56, 128
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 3 cut(s) 316, 361, 424
BstC8I GCNNGC 3 cut(s) 50, 54, 58
BstDEI CTNAG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMCI CGRYCG 2 cut(s) 57, 61
BstMWI GCNNNNNNNGC 3 cut(s) 138, 147, 227
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 208, 389
BstUI CGCG 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 16
BstZI CGGCCG 2 cut(s) 54, 58
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 3 cut(s) 48, 56, 60
Cac8I GCNNGC 3 cut(s) 50, 54, 58
CfoI GCGC 1 cut(s) 521
Cfr10I RCCGGY 3 cut(s) 52, 56, 128
CseI GACGC 2 cut(s) 163, 240
Csp6I GTAC 1 cut(s) 99
CviAII CATG 2 cut(s) 34, 70
CviJI RGCY 9 cut(s) 5, 48, 52, 56, 60, 76, 207, 258, 538
CviKI_1 RGCY 9 cut(s) 5, 48, 52, 56, 60, 76, 207, 258, 538
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EaeI YGGCCR 2 cut(s) 54, 58
EagI CGGCCG 2 cut(s) 54, 58
Ecl136II GAGCTC 1 cut(s) 76
EclXI CGGCCG 2 cut(s) 54, 58
Eco24I GRGCYC 1 cut(s) 78
Eco47III AGCGCT 1 cut(s) 520
Eco52I CGGCCG 2 cut(s) 54, 58
Eco53kI GAGCTC 1 cut(s) 76
Eco81I CCTNAGG 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 2 cut(s) 37, 73
FaiI YATR 4 cut(s) 35, 65, 71, 371
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 2 cut(s) 33, 69
FauI CCCGC 1 cut(s) 179
FblI GTMKAC 2 cut(s) 144, 467
Fnu4HI GCNGC 2 cut(s) 6, 61
FriOI GRGCYC 1 cut(s) 78
FseI GGCCGGCC 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 6, 61
FspBI CTAG 3 cut(s) 204, 255, 516
GlaI GCGC 1 cut(s) 520
GluI GCNGC 2 cut(s) 6, 61
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 3 cut(s) 48, 56, 60
HapII CCGG 4 cut(s) 53, 57, 129, 390
HgaI GACGC 2 cut(s) 163, 240
HhaI GCGC 1 cut(s) 521
Hin1II CATG 2 cut(s) 37, 73
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HpaII CCGG 4 cut(s) 53, 57, 129, 390
Hpy166II GTNNAC 2 cut(s) 145, 468
Hpy188I TCNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 145, 468
Hpy99I CGWCG 3 cut(s) 179, 264, 485
HpyCH4III ACNGT 3 cut(s) 316, 361, 424
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 147, 227
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 2 cut(s) 37, 73
HspAI GCGC 1 cut(s) 519
KroI GCCGGC 2 cut(s) 52, 56
KroNI GCCGGC 2 cut(s) 54, 58
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 9 cut(s) 62, 66, 70, 142, 195, 222, 403, 507, 552
MaeI CTAG 3 cut(s) 204, 255, 516
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 310, 355, 418
MalI GATC 1 cut(s) 41
MbiI CCGCTC 1 cut(s) 150
MboI GATC 1 cut(s) 39
MboII GAAGA 2 cut(s) 16, 49
MhlI GDGCHC 2 cut(s) 78, 121
MnlI CCTC 3 cut(s) 38, 172, 187
MroNI GCCGGC 2 cut(s) 52, 56
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 4 cut(s) 53, 57, 129, 390
MspR9I CCNGG 2 cut(s) 210, 391
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 138, 147, 227
NaeI GCCGGC 2 cut(s) 54, 58
NciI CCSGG 1 cut(s) 391
NdeII GATC 1 cut(s) 39
NgoMIV GCCGGC 2 cut(s) 52, 56
NlaIII CATG 2 cut(s) 37, 73
NmeAIII GCCGAG 6 cut(s) 130, 298, 325, 370, 433, 478
NmuCI GTSAC 3 cut(s) 310, 355, 418
PdiI GCCGGC 2 cut(s) 54, 58
PkrI GCNGC 2 cut(s) 7, 62
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PspPPI RGGWCCY 1 cut(s) 159
RigI GGCCGGCC 1 cut(s) 60
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 78
SalI GTCGAC 1 cut(s) 466
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 2 cut(s) 6, 61
Sau3AI GATC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 210, 391
SduI GDGCHC 2 cut(s) 78, 121
SgrAI CRCCGGYG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 68
SspMI CTAG 3 cut(s) 204, 255, 516
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 208, 389
TaaI ACNGT 3 cut(s) 316, 361, 424
TaiI ACGT 1 cut(s) 483
TaqI TCGA 7 cut(s) 240, 262, 282, 327, 435, 467, 483
TauI GCSGC 1 cut(s) 63
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseFI GTSAC 3 cut(s) 310, 355, 418
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 310, 355, 418
TspDTI ATGAA 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 104
XmiI GTMKAC 2 cut(s) 144, 467
XspI CTAG 3 cut(s) 204, 255, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.