Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002495.1

Orthogroup ID

OG0021654

Physical Location & Seq

Genomic Coordinates Forward (+)

195598 .. 196077

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggctgctcaaacaaaggtcttcttggacatgaagatgggaggccagccggccggccgcatcgtcatggagctctacgccgactctaccccacgtaccgccgagaacttccgtgctctctgcaccggcgagaagggcgtagaccgctcgggtaggacctccaccccccgcgtcatcaagaacatcaaggaggttaagtctagccctggaaggaccgccaagaacatcgagaaggttgcgtctagccctcgaaggaccgccgagaacatcgagaaggttaggaccgccaagaacatcgagaaggttaggactgccatgaaggttgtgtctattgctggaaggaccgtcaagaacatcgagaaggttaggaccgccgagaaggttgtgtcgaccgtcaagaacgtcgagaaggttaggaccgccaagaaggttgggtctagcgctggaaggaccgccaagcctgttgtgattgcctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008144 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009735 GO:0009741 GO:0009742 GO:0009755 GO:0009785 GO:0009791 GO:0009987 GO:0010017 GO:0010033 GO:0010035 GO:0010038 GO:0014070 GO:0016018 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019220 GO:0019222 GO:0019538 GO:0023052 GO:0030522 GO:0031323 GO:0031399 GO:0032268 GO:0032501 GO:0032502 GO:0032870 GO:0033218 GO:0033993 GO:0036211 GO:0042221 GO:0042277 GO:0042325 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048046 GO:0048545 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051606 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071478 GO:0071482 GO:0071483 GO:0071489 GO:0071495 GO:0071704 GO:0071944 GO:0080090 GO:0104004 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

159

Amino Acids

17.3

Weight (kDa)

10.7

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	8 - 67	4.2e-07	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0021654)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002495.1_g000039
rosa_samantha	Rh1AG222200 Rh1CG207000
rosa_wichuraiana	Rw0G014810 Rw1G018930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	2 cut(s)	141, 389
AccII	CGCG	1 cut(s)	171
AcoI	YGGCCR	2 cut(s)	51, 55
AfaI	GTAC	1 cut(s)	97
AfeI	AGCGCT	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	2 cut(s)	75, 118
Ama87I	CYCGRG	1 cut(s)	148
Aor51HI	AGCGCT	1 cut(s)	442
AoxI	GGCC	3 cut(s)	43, 51, 55
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	13
Bbv12I	GWGCWC	2 cut(s)	75, 118
BccI	CCATC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BciT130I	CCWGG	1 cut(s)	207
BfaI	CTAG	3 cut(s)	201, 243, 438
BfoI	RGCGCY	1 cut(s)	444
BisI	GCNGC	2 cut(s)	6, 58
BlsI	GCNGC	2 cut(s)	7, 59
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
BmeT110I	CYCGRG	1 cut(s)	148
BmgT120I	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bse118I	RCCGGY	3 cut(s)	49, 53, 125
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	205
BseX3I	CGGCCG	2 cut(s)	51, 55
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	3 cut(s)	54, 58, 393
BshFI	GGCC	3 cut(s)	45, 53, 57
BsiEI	CGRYCG	3 cut(s)	54, 58, 393
BsiHKAI	GWGCWC	2 cut(s)	75, 118
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	50, 54, 126
BsnI	GGCC	3 cut(s)	45, 53, 57
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	75, 118
BspANI	GGCC	3 cut(s)	45, 53, 57
BspFNI	CGCG	1 cut(s)	171
BsrBI	CCGCTC	1 cut(s)	147
BsrFI	RCCGGY	3 cut(s)	49, 53, 125
BssAI	RCCGGY	3 cut(s)	49, 53, 125
BssECI	CCNNGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	346, 394
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	3 cut(s)	47, 51, 55
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	443
BstMCI	CGRYCG	3 cut(s)	54, 58, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 144
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	13
BstZI	CGGCCG	2 cut(s)	51, 55
BsuRI	GGCC	3 cut(s)	45, 53, 57
Cac8I	GCNNGC	3 cut(s)	47, 51, 55
CfoI	GCGC	1 cut(s)	443
Cfr10I	RCCGGY	3 cut(s)	49, 53, 125
Cfr13I	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
CseI	GACGC	2 cut(s)	160, 228
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	3 cut(s)	31, 67, 316
CviJI	RGCY	9 cut(s)	5, 45, 49, 53, 57, 73, 204, 246, 460
CviKI_1	RGCY	9 cut(s)	5, 45, 49, 53, 57, 73, 204, 246, 460
CviQI	GTAC	1 cut(s)	96
EaeI	YGGCCR	2 cut(s)	51, 55
EagI	CGGCCG	2 cut(s)	51, 55
Ecl136II	GAGCTC	1 cut(s)	73
EclXI	CGGCCG	2 cut(s)	51, 55
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
Eco47III	AGCGCT	1 cut(s)	442
Eco52I	CGGCCG	2 cut(s)	51, 55
Eco53kI	GAGCTC	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	3 cut(s)	34, 70, 319
FaiI	YATR	3 cut(s)	32, 68, 317
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	3 cut(s)	30, 66, 315
FauI	CCCGC	1 cut(s)	176
FblI	GTMKAC	2 cut(s)	141, 389
Fnu4HI	GCNGC	2 cut(s)	6, 58
FriOI	GRGCYC	1 cut(s)	75
FseI	GGCCGGCC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	6, 58
FspBI	CTAG	3 cut(s)	201, 243, 438
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	2 cut(s)	6, 58
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	45, 53, 57
HapII	CCGG	3 cut(s)	50, 54, 126
HgaI	GACGC	2 cut(s)	160, 228
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	3 cut(s)	34, 70, 319
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	3 cut(s)	50, 54, 126
Hpy166II	GTNNAC	2 cut(s)	142, 390
Hpy188III	TCNNGA	8 cut(s)	178, 229, 271, 298, 349, 358, 397, 406
Hpy8I	GTNNAC	2 cut(s)	142, 390
Hpy99I	CGWCG	1 cut(s)	407
HpyCH4III	ACNGT	2 cut(s)	346, 394
HpyCH4IV	ACGT	2 cut(s)	94, 402
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 144
HpySE526I	ACGT	2 cut(s)	94, 402
Hsp92II	CATG	3 cut(s)	34, 70, 319
HspAI	GCGC	1 cut(s)	441
KroI	GCCGGC	2 cut(s)	49, 53
KroNI	GCCGGC	2 cut(s)	51, 55
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	9 cut(s)	59, 63, 67, 139, 192, 219, 321, 429, 474
LweI	GCATC	1 cut(s)	69
MaeI	CTAG	3 cut(s)	201, 243, 438
MaeII	ACGT	2 cut(s)	94, 402
MbiI	CCGCTC	1 cut(s)	147
MboII	GAAGA	2 cut(s)	13, 46
MhlI	GDGCHC	2 cut(s)	75, 118
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	4 cut(s)	35, 169, 184, 258
MroNI	GCCGGC	2 cut(s)	49, 53
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	2 cut(s)	35, 65
MspI	CCGG	3 cut(s)	50, 54, 126
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	135, 144
NaeI	GCCGGC	2 cut(s)	51, 55
NgoMIV	GCCGGC	2 cut(s)	49, 53
NlaIII	CATG	3 cut(s)	34, 70, 319
NmeAIII	GCCGAG	3 cut(s)	127, 286, 400
PdiI	GCCGGC	2 cut(s)	51, 55
PkrI	GCNGC	2 cut(s)	7, 59
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	75
Psp5II	RGGWCCY	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspPI	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
PspPPI	RGGWCCY	1 cut(s)	156
RigI	GGCCGGCC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
RseI	CAYNNNNRTG	2 cut(s)	35, 65
SacI	GAGCTC	1 cut(s)	75
SalI	GTCGAC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	6, 58
Sau96I	GGNCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	75, 118
SfaNI	GCATC	1 cut(s)	69
SgrAI	CRCCGGYG	1 cut(s)	125
SinI	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
SmiMI	CAYNNNNRTG	2 cut(s)	35, 65
SspMI	CTAG	3 cut(s)	201, 243, 438
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	346, 394
TaiI	ACGT	2 cut(s)	97, 405
TaqI	TCGA	7 cut(s)	228, 250, 270, 297, 357, 389, 405
TauI	GCSGC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	47, 332
TspGWI	ACGGA	1 cut(s)	101
VpaK11BI	GGWCC	8 cut(s)	156, 213, 255, 282, 342, 369, 417, 450
XmiI	GTMKAC	2 cut(s)	141, 389
XspI	CTAG	3 cut(s)	201, 243, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.