Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002521.1

Orthogroup ID

OG0009850

Physical Location & Seq

Genomic Coordinates Reverse (-)

231044 .. 231578

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002521.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggttgatttatctgcttcagaaataagcacaagatttgaagagcaaaagagagttgagcgtgaactccgaggtcgcatagctgaatttgagcagaaaatttttgaaggagagagattaagaaaaaagctccacaatgatattctggaattaaaaggcaatattcgagtattctgccgtgtacgtccattgctacctgatgatgccactgaagtcccagtcatttcatatcctacatcaacagaagaactaggtcgtggaattgacttggtgcagactgggcaaaagtatcactttacatttgacaaagtatttgatcatgtggcatcactacatgatgtttttgtggaaatattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

119

Amino Acids

13.89

Weight (kDa)

5.59

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05190 AT4G05190 AT4G21270
fragaria_vesca	FvH4_3g02912 FvH4_3g02912
malus_domestica	MD05G1336300.v1.1 MD10G1311800.v1.1
prunus_persica	Prupe.4G029200_v2.0.a1
pyrus_communis	pycom05g30780 pycom10g26310
rosa_chinensis	RchiOBHm_Chr5g0004491
rosa_laevigata	RLG00000031233
rosa_multiflora	Rmu_sc0000485.1_g000002 Rmu_sc0002521.1_g000052
rosa_roxburghii	Rroxscaffold_1G00071030 Rroxscaffold_4G00280920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh5BG038800 Rh5CG042900 Rh5DG038700
rosa_wichuraiana	Rw5G003800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	86, 99
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	41, 107
AluBI	AGCT	2 cut(s)	83, 130
AluI	AGCT	2 cut(s)	83, 130
ApoI	RAATTY	2 cut(s)	86, 99
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BclI	TGATCA	1 cut(s)	316
BfaI	CTAG	1 cut(s)	251
BmrI	ACTGGG	2 cut(s)	212, 288
BmsI	GCATC	2 cut(s)	193, 335
BmuI	ACTGGG	2 cut(s)	212, 288
BsaJI	CCNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	218, 283
Bse3DI	GCAATG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	188
BseNI	ACTGG	2 cut(s)	218, 283
BsgI	GTGCAG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	316
BspQI	GCTCTTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	218, 283
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	316
Bst6I	CTCTTC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	2 cut(s)	320, 335
CviJI	RGCY	2 cut(s)	83, 130
CviKI_1	RGCY	2 cut(s)	83, 130
CviQI	GTAC	1 cut(s)	182
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	231
FaeI	CATG	2 cut(s)	323, 338
FaiI	YATR	4 cut(s)	80, 229, 321, 336
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	319, 334
FbaI	TGATCA	1 cut(s)	316
FspBI	CTAG	1 cut(s)	251
Hin1II	CATG	2 cut(s)	323, 338
Hpy166II	GTNNAC	2 cut(s)	65, 182
Hpy188I	TCNGA	2 cut(s)	22, 71
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	2 cut(s)	65, 182
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	323, 338
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	316
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	4 cut(s)	131, 210, 231, 264
LweI	GCATC	2 cut(s)	193, 335
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	184
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	2 cut(s)	53, 257
MluCI	AATT	4 cut(s)	86, 99, 149, 261
MnlI	CCTC	1 cut(s)	65
MseI	TTAA	2 cut(s)	119, 152
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	2 cut(s)	323, 338
PciSI	GCTCTTC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	119, 152
Sau3AI	GATC	1 cut(s)	316
SetI	ASST	6 cut(s)	76, 85, 132, 187, 199, 256
SfaNI	GCATC	2 cut(s)	193, 335
Sse9I	AATT	4 cut(s)	86, 99, 149, 261
SspI	AATATT	2 cut(s)	163, 354
SspMI	CTAG	1 cut(s)	251
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	166
TasI	AATT	4 cut(s)	86, 99, 149, 261
Tru1I	TTAA	2 cut(s)	119, 152
Tru9I	TTAA	2 cut(s)	119, 152
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	1 cut(s)	214
XapI	RAATTY	2 cut(s)	86, 99
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.