Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009850

Physical Location & Seq

Genomic Coordinates Reverse (-)

2845487 .. 2848147

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG038700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGCTTCGCGCAACCAGAATAGGCCTCCCCGTAGTCCCTCTACTAAGAAGATTGGTGTTGATGAAGTTCCGTTAGACAAGCGAAGGAGGATAACAGGAAAAGCAGACGGCCAGAGTAGCATGGGGCGACCACGCCTGCCATTTAGTTCTGTTAACAAGAGGCAAGAAGGTGGAGCTGCCAGTGAGACTGCCAGTGTGGAGAGTTCAGACTGTGGCGAGGCTGAGAGAGTGTTCACAAAAGAAGAAGTCGAGGAGTTGTTGAATAAGAAGTATAAAGAGAAGAAGTTTGATCACAAGGGGAACGCCCAACAACTAGCCGCATATCATAAAAACCTAAAGGATTGCATTAAATGGTACCTGAAGGTTGAGAAAGAACATCTTCTTGAGGTGGAAAGGCTTCAGAATTTATTGAATTCTGCTGAAAAGAAGTGCGAGGATACTGAGGTGGAGATGAAGAACGTGGTAGACGAACTCAATGCCATCAATTCAAATTTGCGACAAACTATAGCTACCCTAGAAGAGAAACTCGCAAAGGAAGAATCAGAAAAGATGGATGCAATTAGTAGTCATAGAAAAGAAAAGGACGCAAGGGCTGCTGCTGAGAAGTTGCAAGTTGCTCTCTCAGGCGAGCTTGAAAAAGTACGGGAAGCAAAATTAGTTGTTGAGCAGAGGGCTATCAAGTTTGAGGATGATTATAATCGAACACAAGAGTATAACAAGAGTTTGCAACAGTATAATAGCAAACTGCAAAGTGATGTTAACACAATGGATGAGTCCCGGAAACGAGCAGAAAATGAGAAGCTGACTATGGTGGAGAACCTTAGCAACTTGAGGGGTCACAAGAAGGCATTAGAAGATCAATTGGCTTCACTGAAAGCTTCACATGATGATGCTTTGAAGCAAAAAGAATGTCTTCGAGGGCAATTGCAAGAGGTTAGAGATGACCGTGATCACCATGTAAAAGAGAATCATGATTTGAAGGCTGAAGTTGTGAAGCATTTTGCAGAGTTAGATAAACTGGCCCAGAAAACTAAAGAGTTGGAGGAGACATGTTCATCTCAAATGATGCATATAGATTCATTAAAGCATGAGAGAGATCAATTAAGGCATGAAAGAGATATGGTTGATTTATCTGCTTCAGAAATAAGCACAAGATTTGAAGAGCAAAAGAGAGTTGAGCGTGAACTCCGAGGTCGCATAGCTGAATTTGAGCAGAAAATTTTTGAAGGAGAGAGATTAAGAAAAAAGCTCCACAATGATATTCTGGTAATCTTTCTGAACTTAATTCCTTTTAAAATCAGCAAGATTTATTTGGTAATGATCTTCTTGTGTTATAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

447

Amino Acids

51.98

Weight (kDa)

7.65

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05190 AT4G05190 AT4G21270
fragaria_vesca	FvH4_3g02912 FvH4_3g02912
malus_domestica	MD05G1336300.v1.1 MD10G1311800.v1.1
prunus_persica	Prupe.4G029200_v2.0.a1
pyrus_communis	pycom05g30780 pycom10g26310
rosa_chinensis	RchiOBHm_Chr5g0004491
rosa_laevigata	RLG00000031233
rosa_multiflora	Rmu_sc0000485.1_g000002 Rmu_sc0002521.1_g000052
rosa_roxburghii	Rroxscaffold_1G00071030 Rroxscaffold_4G00280920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh5BG038800 Rh5CG042900 Rh5DG038700
rosa_wichuraiana	Rw5G003800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	465
AccII	CGCG	1 cut(s)	10
AciI	CCGC	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	5 cut(s)	403, 412, 490, 1205, 1218
AcuI	CTGAAG	4 cut(s)	380, 383, 1005, 1122
AfaI	GTAC	2 cut(s)	356, 642
AflIII	ACRYGT	1 cut(s)	1049
AgsI	TTSAA	8 cut(s)	262, 412, 489, 635, 898, 979, 1160, 1226
AluBI	AGCT	7 cut(s)	176, 509, 631, 802, 878, 1202, 1249
AluI	AGCT	7 cut(s)	176, 509, 631, 802, 878, 1202, 1249
Alw26I	GTCTC	2 cut(s)	179, 1040
AoxI	GGCC	3 cut(s)	23, 109, 1020
ApeKI	GCWGC	3 cut(s)	176, 593, 596
ApoI	RAATTY	5 cut(s)	403, 412, 490, 1205, 1218
ArsI	GACNNNNNNTTYG	2 cut(s)	895, 927
Asp700I	GAANNNNTTC	3 cut(s)	378, 396, 912
Asp718I	GGTACC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	1021
AsuC2I	CCSGG	1 cut(s)	778
AsuHPI	GGTGA	1 cut(s)	944
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BanI	GGYRCC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	905
BbvI	GCAGC	3 cut(s)	163, 580, 583
BccI	CCATC	2 cut(s)	488, 544
BceAI	ACGGC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	458, 492
BciVI	GTATCC	1 cut(s)	430
BclI	TGATCA	2 cut(s)	289, 949
BcnI	CCSGG	1 cut(s)	778
BcoDI	GTCTC	2 cut(s)	179, 1040
BfaI	CTAG	2 cut(s)	314, 515
BfmI	CTRYAG	1 cut(s)	504
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	4 cut(s)	177, 318, 594, 597
BlsI	GCNGC	4 cut(s)	178, 319, 595, 598
Bme1390I	CCNGG	1 cut(s)	778
BmgT120I	GGNCC	1 cut(s)	1021
BmiI	GGNNCC	1 cut(s)	356
BmrFI	CCNGG	1 cut(s)	778
BmsI	GCATC	3 cut(s)	544, 880, 1056
BpiI	GAAGAC	1 cut(s)	905
Bpu10I	CCTNAGC	1 cut(s)	821
BpuEI	CTTGAG	2 cut(s)	404, 850
BpuMI	CCSGG	1 cut(s)	778
BsaBI	GATNNNNATC	1 cut(s)	696
BsaJI	CCNNGG	1 cut(s)	1189
Bse1I	ACTGG	3 cut(s)	180, 192, 1023
Bse8I	GATNNNNATC	1 cut(s)	696
BseDI	CCNNGG	1 cut(s)	1189
BseGI	GGATG	3 cut(s)	559, 694, 775
BseJI	GATNNNNATC	1 cut(s)	696
BseMII	CTCAG	4 cut(s)	213, 432, 591, 636
BseNI	ACTGG	3 cut(s)	180, 192, 1023
BseRI	GAGGAG	2 cut(s)	266, 1058
BseXI	GCAGC	3 cut(s)	163, 580, 583
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	3 cut(s)	25, 111, 1022
BshNI	GGYRCC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	778
BslFI	GGGAC	2 cut(s)	21, 760
BsmAI	GTCTC	2 cut(s)	179, 1040
BsmFI	GGGAC	2 cut(s)	21, 760
BsnI	GGCC	3 cut(s)	25, 111, 1022
Bsp143I	GATC	5 cut(s)	289, 856, 949, 1096, 1320
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	3 cut(s)	25, 111, 1022
BspCNI	CTCAG	4 cut(s)	214, 433, 592, 635
BspFNI	CGCG	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	970
BspLI	GGNNCC	1 cut(s)	356
BspQI	GCTCTTC	1 cut(s)	1155
BspT107I	GGYRCC	1 cut(s)	354
BsrI	ACTGG	3 cut(s)	180, 192, 1023
BssECI	CCNNGG	1 cut(s)	1189
BssMI	GATC	5 cut(s)	289, 856, 949, 1096, 1320
Bst4CI	ACNGT	3 cut(s)	212, 732, 947
Bst6I	CTCTTC	2 cut(s)	513, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	137, 629
BstDEI	CTNAG	6 cut(s)	45, 222, 441, 600, 622, 821
BstF5I	GGATG	3 cut(s)	559, 694, 775
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	5 cut(s)	292, 859, 952, 1099, 1323
BstMAI	GTCTC	2 cut(s)	179, 1040
BstMBI	GATC	5 cut(s)	289, 856, 949, 1096, 1320
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 593
BstNSI	RCATGY	1 cut(s)	1053
BstSCI	CCNGG	1 cut(s)	776
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	163, 580, 583
BstV2I	GAAGAC	1 cut(s)	905
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	3 cut(s)	25, 111, 1022
BtsCI	GGATG	3 cut(s)	559, 694, 775
BtsIMutI	CAGTG	3 cut(s)	187, 199, 869
Cac8I	GCNNGC	2 cut(s)	137, 629
CciI	TCATGA	1 cut(s)	970
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	1021
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	2 cut(s)	355, 641
CviAII	CATG	7 cut(s)	121, 884, 956, 971, 1050, 1088, 1109
CviQI	GTAC	2 cut(s)	355, 641
DdeI	CTNAG	6 cut(s)	45, 222, 441, 600, 622, 821
DpnI	GATC	5 cut(s)	291, 858, 951, 1098, 1322
DpnII	GATC	5 cut(s)	289, 856, 949, 1096, 1320
DraI	TTTAAA	1 cut(s)	1294
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	513, 1155
EarI	CTCTTC	2 cut(s)	513, 1155
Eco147I	AGGCCT	1 cut(s)	25
Eco57I	CTGAAG	4 cut(s)	380, 383, 1005, 1122
EcoRI	GAATTC	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	1071
FaeI	CATG	7 cut(s)	124, 887, 959, 974, 1053, 1091, 1112
FalI	AAGNNNNNCTT	4 cut(s)	363, 395, 897, 929
FaqI	GGGAC	2 cut(s)	21, 760
FatI	CATG	7 cut(s)	120, 883, 955, 970, 1049, 1087, 1108
FbaI	TGATCA	2 cut(s)	289, 949
FblI	GTMKAC	1 cut(s)	465
Fnu4HI	GCNGC	4 cut(s)	177, 318, 594, 597
FokI	GGATG	3 cut(s)	566, 701, 782
Fsp4HI	GCNGC	4 cut(s)	177, 318, 594, 597
FspBI	CTAG	2 cut(s)	314, 515
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	4 cut(s)	177, 318, 594, 597
HaeIII	GGCC	3 cut(s)	25, 111, 1022
HapII	CCGG	1 cut(s)	778
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	7 cut(s)	124, 887, 959, 974, 1053, 1091, 1112
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	2 cut(s)	154, 760
HindII	GTYRAC	2 cut(s)	154, 760
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	4 cut(s)	539, 773, 967, 1076
HpaI	GTTAAC	2 cut(s)	154, 760
HpaII	CCGG	1 cut(s)	778
HphI	GGTGA	1 cut(s)	944
Hpy166II	GTNNAC	5 cut(s)	154, 234, 466, 760, 1184
Hpy188I	TCNGA	6 cut(s)	208, 402, 544, 1141, 1190, 1278
Hpy188III	TCNNGA	2 cut(s)	383, 971
Hpy8I	GTNNAC	5 cut(s)	154, 234, 466, 760, 1184
HpyAV	CCTTC	6 cut(s)	78, 161, 355, 838, 973, 1220
HpyCH4III	ACNGT	3 cut(s)	212, 732, 947
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	8 cut(s)	345, 557, 610, 727, 748, 928, 1004, 1069
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 593
HpyF3I	CTNAG	6 cut(s)	45, 222, 441, 600, 622, 821
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	7 cut(s)	124, 887, 959, 974, 1053, 1091, 1112
HspAI	GCGC	1 cut(s)	10
KpnI	GGTACC	1 cut(s)	358
Ksp22I	TGATCA	2 cut(s)	289, 949
KspAI	GTTAAC	2 cut(s)	154, 760
Kzo9I	GATC	5 cut(s)	289, 856, 949, 1096, 1320
LguI	GCTCTTC	1 cut(s)	1155
LmnI	GCTCC	2 cut(s)	173, 1254
Lsp1109I	GCAGC	3 cut(s)	163, 580, 583
LweI	GCATC	3 cut(s)	544, 880, 1056
MaeI	CTAG	2 cut(s)	314, 515
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	836
MalI	GATC	5 cut(s)	291, 858, 951, 1098, 1322
MboI	GATC	5 cut(s)	289, 856, 949, 1096, 1320
MfeI	CAATTG	2 cut(s)	860, 923
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	1 cut(s)	1020
Mph1103I	ATGCAT	1 cut(s)	1071
MroXI	GAANNNNTTC	3 cut(s)	378, 396, 912
MseI	TTAA	9 cut(s)	153, 348, 759, 1082, 1103, 1238, 1283, 1293, 1342
MslI	CAYNNNNRTG	1 cut(s)	888
MspI	CCGG	1 cut(s)	778
MspR9I	CCNGG	1 cut(s)	778
MunI	CAATTG	2 cut(s)	860, 923
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	117, 593
NciI	CCSGG	1 cut(s)	778
NdeII	GATC	5 cut(s)	289, 856, 949, 1096, 1320
NlaIII	CATG	7 cut(s)	124, 887, 959, 974, 1053, 1091, 1112
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	836
NsiI	ATGCAT	1 cut(s)	1071
NspI	RCATGY	1 cut(s)	1053
PagI	TCATGA	1 cut(s)	970
PceI	AGGCCT	1 cut(s)	25
PciI	ACATGT	1 cut(s)	1049
PciSI	GCTCTTC	1 cut(s)	1155
PcsI	WCGNNNNNNNCGW	1 cut(s)	465
PdmI	GAANNNNTTC	3 cut(s)	378, 396, 912
PfeI	GAWTC	3 cut(s)	539, 967, 1076
PfoI	TCCNGGA	1 cut(s)	776
PkrI	GCNGC	4 cut(s)	178, 319, 595, 598
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PscI	ACATGT	1 cut(s)	1049
PsiI	TTATAA	1 cut(s)	696
PspN4I	GGNNCC	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	1021
RsaI	GTAC	2 cut(s)	356, 642
RsaNI	GTAC	2 cut(s)	355, 641
RseI	CAYNNNNRTG	1 cut(s)	888
SapI	GCTCTTC	1 cut(s)	1155
SaqAI	TTAA	9 cut(s)	153, 348, 759, 1082, 1103, 1238, 1283, 1293, 1342
SatI	GCNGC	4 cut(s)	177, 318, 594, 597
Sau3AI	GATC	5 cut(s)	289, 856, 949, 1096, 1320
Sau96I	GGNCC	1 cut(s)	1021
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	1 cut(s)	778
SfaNI	GCATC	3 cut(s)	544, 880, 1056
SfcI	CTRYAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	888
SmlI	CTYRAG	2 cut(s)	383, 829
SmoI	CTYRAG	2 cut(s)	383, 829
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	2 cut(s)	314, 515
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	776
TaaI	ACNGT	3 cut(s)	212, 732, 947
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	3 cut(s)	249, 700, 916
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	3 cut(s)	539, 967, 1076
Tru1I	TTAA	9 cut(s)	153, 348, 759, 1082, 1103, 1238, 1283, 1293, 1342
Tru9I	TTAA	9 cut(s)	153, 348, 759, 1082, 1103, 1238, 1283, 1293, 1342
TscAI	CASTG	3 cut(s)	187, 199, 876
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	3 cut(s)	176, 593, 596
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	5 cut(s)	78, 467, 1044, 1068, 1125
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	3 cut(s)	187, 199, 876
XapI	RAATTY	5 cut(s)	403, 412, 490, 1205, 1218
XceI	RCATGY	1 cut(s)	1053
XmiI	GTMKAC	1 cut(s)	465
XmnI	GAANNNNTTC	3 cut(s)	378, 396, 912
XspI	CTAG	2 cut(s)	314, 515
Zsp2I	ATGCAT	1 cut(s)	1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.