Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002589.1

Orthogroup ID

OG0021655

Physical Location & Seq

Genomic Coordinates Forward (+)

155235 .. 160632

Gene Structure 5398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgccttatccctacaaagagatgatggattcggacccctcatatgtcatgaacaccaccaatagtggtgtgcgttccctctccccatcccataatattagtgttttggaaggttttgctgatgttgggtatctctctgacccacacaatggtgtggagaatgatggtggagagtttacttggcctctggatgtcaagattctgtcgggttcagttggttgcagtatcaccatggcggccagcctctgcgttgaagtgaagagcttgggtcagagctcctccaccgtgaactcgtccccgagatcgaatgttctgcccatcgggaacatatgcccacctggcaaaatcctcaaggcgggtatggttccgaattggagctctagaaccgaccttttgggctccgggacgagctgttacggccacgggagcataatgtggggcggcgcggcggccaagagtgtcggtgcagcggaggccatgagctccagaacaagcggcggcggagagttgaagagaggaatggggagtgtggatccagaagaggttgcagccttgacaggtctacggcggctgggggaggtggtgagggagtgtgaggaggctgtacatggtgaagaaagacagaagatggtcgtggttttggaagagagagagacagagagacagagaggacccagagaggaagaaaaaaaaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0023051 GO:0023056 GO:0033993 GO:0042221 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0097305 GO:1901419 GO:1901421 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_8 Thioredoxin

Protein Analysis

232

Amino Acids

24.67

Weight (kDa)

5.23

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021655)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002589.1_g000027 Rmu_sc0003238.1_g000022 Rmu_sc0008559.1_g000009
rosa_rugosa	Rorug06G0393200
rosa_samantha	Rh4CG057500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	1 cut(s)	446
AclWI	GGATC	2 cut(s)	527, 540
AcoI	YGGCCR	3 cut(s)	237, 418, 450
AfaI	GTAC	1 cut(s)	606
AfiI	CCNNNNNNNGG	2 cut(s)	149, 355
AgsI	TTSAA	2 cut(s)	254, 511
AjnI	CCWGG	1 cut(s)	337
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	5 cut(s)	264, 276, 378, 411, 483
AluI	AGCT	5 cut(s)	264, 276, 378, 411, 483
Alw21I	GWGCWC	3 cut(s)	278, 380, 485
Alw26I	GTCTC	2 cut(s)	647, 655
AlwI	GGATC	2 cut(s)	527, 540
AlwNI	CAGNNNCTG	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	5 cut(s)	182, 237, 418, 450, 474
ApeKI	GCWGC	2 cut(s)	467, 548
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	34, 671
AsuC2I	CCSGG	1 cut(s)	403
AsuHPI	GGTGA	3 cut(s)	220, 595, 623
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	34, 671
BamHI	GGATCC	1 cut(s)	532
BanII	GRGCYC	4 cut(s)	278, 380, 401, 485
Bbv12I	GWGCWC	3 cut(s)	278, 380, 485
BbvI	GCAGC	2 cut(s)	479, 560
BccI	CCATC	5 cut(s)	19, 94, 158, 326, 622
BceAI	ACGGC	2 cut(s)	433, 581
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	403
BcoDI	GTCTC	2 cut(s)	647, 655
BfaI	CTAG	1 cut(s)	381
BglI	GCCNNNNNGGC	1 cut(s)	339
BisI	GCNGC	9 cut(s)	237, 442, 447, 450, 468, 496, 499, 549, 569
BlsI	GCNGC	9 cut(s)	238, 443, 448, 451, 469, 497, 500, 550, 570
Bme1390I	CCNGG	2 cut(s)	339, 403
Bme18I	GGWCC	2 cut(s)	34, 671
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	34, 671
BmiI	GGNNCC	5 cut(s)	36, 366, 400, 534, 673
BmrFI	CCNGG	2 cut(s)	339, 403
BpmI	CTGGAG	1 cut(s)	469
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	403
BsaJI	CCNNGG	2 cut(s)	231, 421
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 355
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	231, 421
BseGI	GGATG	2 cut(s)	86, 196
BseLI	CCNNNNNNNGG	2 cut(s)	149, 355
BseRI	GAGGAG	2 cut(s)	268, 611
BseXI	GCAGC	2 cut(s)	479, 560
BseYI	CCCAGC	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	5 cut(s)	184, 239, 420, 452, 476
BsiHKAI	GWGCWC	3 cut(s)	278, 380, 485
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	2 cut(s)	280, 418
BslI	CCNNNNNNNGG	2 cut(s)	149, 355
BsmAI	GTCTC	2 cut(s)	647, 655
BsmFI	GGGAC	2 cut(s)	280, 418
BsnI	GGCC	5 cut(s)	184, 239, 420, 452, 476
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	4 cut(s)	278, 380, 401, 485
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	2 cut(s)	302, 532
Bsp19I	CCATGG	1 cut(s)	231
BspANI	GGCC	5 cut(s)	184, 239, 420, 452, 476
BspFNI	CGCG	1 cut(s)	446
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	5 cut(s)	36, 366, 400, 534, 673
BspPI	GGATC	2 cut(s)	527, 540
BspQI	GCTCTTC	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	231, 421
BssMI	GATC	2 cut(s)	302, 532
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	4 cut(s)	254, 506, 534, 639
BstAUI	TGTACA	1 cut(s)	604
BstC8I	GCNNGC	1 cut(s)	241
BstDSI	CCRYGG	2 cut(s)	231, 421
BstF5I	GGATG	2 cut(s)	86, 196
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	2 cut(s)	305, 535
BstMAI	GTCTC	2 cut(s)	647, 655
BstMBI	GATC	2 cut(s)	302, 532
BstMWI	GCNNNNNNNGC	4 cut(s)	339, 417, 426, 473
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	337, 401
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	479, 560
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuRI	GGCC	5 cut(s)	184, 239, 420, 452, 476
BtgI	CCRYGG	2 cut(s)	231, 421
BtsCI	GGATG	2 cut(s)	86, 196
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	246
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	2 cut(s)	34, 671
Csp6I	GTAC	1 cut(s)	605
CviAII	CATG	4 cut(s)	49, 232, 478, 608
CviQI	GTAC	1 cut(s)	605
DpnI	GATC	2 cut(s)	304, 534
DpnII	GATC	2 cut(s)	302, 532
EaeI	YGGCCR	3 cut(s)	237, 418, 450
Eam1104I	CTCTTC	4 cut(s)	254, 506, 534, 639
EarI	CTCTTC	4 cut(s)	254, 506, 534, 639
EciI	GGCGGA	1 cut(s)	516
Ecl136II	GAGCTC	3 cut(s)	276, 378, 483
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	4 cut(s)	278, 380, 401, 485
Eco47I	GGWCC	2 cut(s)	34, 671
Eco53kI	GAGCTC	3 cut(s)	276, 378, 483
Eco88I	CYCGRG	1 cut(s)	298
EcoICRI	GAGCTC	3 cut(s)	276, 378, 483
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	4 cut(s)	278, 380, 401, 485
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	4 cut(s)	52, 235, 481, 611
FaqI	GGGAC	2 cut(s)	280, 418
FatI	CATG	4 cut(s)	48, 231, 477, 607
FauI	CCCGC	1 cut(s)	349
FauNDI	CATATG	2 cut(s)	43, 329
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	9 cut(s)	237, 442, 447, 450, 468, 496, 499, 549, 569
FokI	GGATG	2 cut(s)	73, 203
FriOI	GRGCYC	4 cut(s)	278, 380, 401, 485
Fsp4HI	GCNGC	9 cut(s)	237, 442, 447, 450, 468, 496, 499, 549, 569
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	9 cut(s)	237, 442, 447, 450, 468, 496, 499, 549, 569
GsaI	CCCAGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	469
HaeIII	GGCC	5 cut(s)	184, 239, 420, 452, 476
HapII	CCGG	1 cut(s)	402
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	52, 235, 481, 611
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HinfI	GANTC	2 cut(s)	29, 199
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	3 cut(s)	220, 595, 623
Hpy166II	GTNNAC	3 cut(s)	177, 289, 563
Hpy188I	TCNGA	5 cut(s)	34, 139, 273, 369, 698
Hpy188III	TCNNGA	7 cut(s)	49, 188, 196, 322, 381, 486, 536
Hpy8I	GTNNAC	3 cut(s)	177, 289, 563
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	222, 467, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	339, 417, 426, 473
Hsp92II	CATG	4 cut(s)	52, 235, 481, 611
HspAI	GCGC	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	302, 532
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	5 cut(s)	281, 375, 404, 426, 488
Lsp1109I	GCAGC	2 cut(s)	479, 560
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	304, 534
MboI	GATC	2 cut(s)	302, 532
MboII	GAAGA	7 cut(s)	271, 523, 551, 626, 637, 656, 695
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	4 cut(s)	278, 380, 401, 485
MluCI	AATT	1 cut(s)	370
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	470
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	339, 403
MvaI	CCWGG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	339, 417, 426, 473
NciI	CCSGG	1 cut(s)	403
NcoI	CCATGG	1 cut(s)	231
NdeI	CATATG	2 cut(s)	43, 329
NdeII	GATC	2 cut(s)	302, 532
NlaIII	CATG	4 cut(s)	52, 235, 481, 611
NlaIV	GGNNCC	5 cut(s)	36, 366, 400, 534, 673
OliI	CACNNNNGTG	1 cut(s)	150
PagI	TCATGA	1 cut(s)	48
PciSI	GCTCTTC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	29, 199
PflMI	CCANNNNNTGG	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	401
PkrI	GCNGC	9 cut(s)	238, 443, 448, 451, 469, 497, 500, 550, 570
PpuMI	RGGWCCY	1 cut(s)	671
Psp124BI	GAGCTC	3 cut(s)	278, 380, 485
Psp5II	RGGWCCY	1 cut(s)	671
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	5 cut(s)	36, 366, 400, 534, 673
PspPI	GGNCC	2 cut(s)	34, 671
PspPPI	RGGWCCY	1 cut(s)	671
PstNI	CAGNNNCTG	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	532
RsaI	GTAC	1 cut(s)	606
RsaNI	GTAC	1 cut(s)	605
RseI	CAYNNNNRTG	1 cut(s)	150
SacI	GAGCTC	3 cut(s)	278, 380, 485
SapI	GCTCTTC	1 cut(s)	254
SatI	GCNGC	9 cut(s)	237, 442, 447, 450, 468, 496, 499, 549, 569
Sau3AI	GATC	2 cut(s)	302, 532
Sau96I	GGNCC	2 cut(s)	34, 671
ScrFI	CCNGG	2 cut(s)	339, 403
SduI	GDGCHC	4 cut(s)	278, 380, 401, 485
SinI	GGWCC	2 cut(s)	34, 671
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	370
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	381
SstI	GAGCTC	3 cut(s)	278, 380, 485
StyD4I	CCNGG	2 cut(s)	337, 401
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	305
TasI	AATT	1 cut(s)	370
TatI	WGTACW	1 cut(s)	604
TauI	GCSGC	7 cut(s)	239, 444, 449, 452, 498, 501, 571
TfiI	GAWTC	2 cut(s)	29, 199
TseI	GCWGC	2 cut(s)	467, 548
TspDTI	ATGAA	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	34, 671
XbaI	TCTAGA	1 cut(s)	380
XmiI	GTMKAC	1 cut(s)	562
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.