Rh4CG057500

TPR repeat-containing thioredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0021655
Physical Location & Seq
Forward (+)
11208349 .. 11208549
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG057500.1

Sequence Viewer

Length: 201 bp
ATGGTTCAGAATTGGAGCTCCAGAACCGACCTTTTGGGCTCCGGGACGGGCTGTTATGGCCACGGGAGCATAATGTGGGGCGGCGCGGCGGCCAAGAGTGTCGGTGCGGCGGAGGCCGTGAGCTCCAGAACAAGCGGCGGCGGAGAGTTGAAGAGAGGAATGGGGAGTGTGGATCCAGAAGAGGTGGAGAGCTGGGAATGA

Protein Analysis

66

Amino Acids

6.73

Weight (kDa)

4.94

Isoelectric Point (pI)

24.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021655)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002589.1_g000027 Rmu_sc0003238.1_g000022 Rmu_sc0008559.1_g000009
rosa_rugosa Rorug06G0393200
rosa_samantha Rh4CG057500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 8 cut(s) 81, 86, 89, 107, 110, 135, 138, 141
AclWI GGATC 2 cut(s) 167, 180
AcoI YGGCCR 2 cut(s) 58, 90
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 3 cut(s) 18, 123, 192
AluI AGCT 3 cut(s) 18, 123, 192
Alw21I GWGCWC 2 cut(s) 20, 125
AlwI GGATC 2 cut(s) 167, 180
AoxI GGCC 3 cut(s) 58, 90, 114
AspLEI GCGC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 43
BalI TGGCCA 1 cut(s) 60
BamHI GGATCC 1 cut(s) 172
BanII GRGCYC 3 cut(s) 20, 41, 125
Bbv12I GWGCWC 2 cut(s) 20, 125
BceAI ACGGC 1 cut(s) 101
BcnI CCSGG 1 cut(s) 43
BisI GCNGC 6 cut(s) 82, 87, 90, 108, 136, 139
BlsI GCNGC 6 cut(s) 83, 88, 91, 109, 137, 140
Bme1390I CCNGG 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 40, 174
BmrFI CCNGG 1 cut(s) 43
BpmI CTGGAG 2 cut(s) 4, 109
BpuMI CCSGG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 3 cut(s) 60, 92, 116
BsiHKAI GWGCWC 2 cut(s) 20, 125
BsiSI CCGG 1 cut(s) 42
BslFI GGGAC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 3 cut(s) 60, 92, 116
Bsp1286I GDGCHC 3 cut(s) 20, 41, 125
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 8 cut(s) 81, 86, 89, 107, 110, 135, 138, 141
BspANI GGCC 3 cut(s) 60, 92, 116
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 40, 174
BspPI GGATC 2 cut(s) 167, 180
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 1 cut(s) 172
Bst6I CTCTTC 2 cut(s) 146, 174
BstDSI CCRYGG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 3 cut(s) 57, 66, 113
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 3 cut(s) 60, 92, 116
BtgI CCRYGG 1 cut(s) 61
CfoI GCGC 1 cut(s) 86
CviJI RGCY 8 cut(s) 18, 39, 51, 60, 92, 116, 123, 192
CviKI_1 RGCY 8 cut(s) 18, 39, 51, 60, 92, 116, 123, 192
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 2 cut(s) 58, 90
Eam1104I CTCTTC 2 cut(s) 146, 174
EarI CTCTTC 2 cut(s) 146, 174
EciI GGCGGA 2 cut(s) 125, 156
Ecl136II GAGCTC 2 cut(s) 18, 123
Eco24I GRGCYC 3 cut(s) 20, 41, 125
Eco53kI GAGCTC 2 cut(s) 18, 123
EcoICRI GAGCTC 2 cut(s) 18, 123
EcoT38I GRGCYC 3 cut(s) 20, 41, 125
FaiI YATR 2 cut(s) 57, 71
FaqI GGGAC 1 cut(s) 58
Fnu4HI GCNGC 6 cut(s) 82, 87, 90, 108, 136, 139
FriOI GRGCYC 3 cut(s) 20, 41, 125
Fsp4HI GCNGC 6 cut(s) 82, 87, 90, 108, 136, 139
GlaI GCGC 1 cut(s) 85
GluI GCNGC 6 cut(s) 82, 87, 90, 108, 136, 139
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 2 cut(s) 4, 109
HaeIII GGCC 3 cut(s) 60, 92, 116
HapII CCGG 1 cut(s) 42
HhaI GCGC 1 cut(s) 86
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HpaII CCGG 1 cut(s) 42
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 21, 126, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 66, 113
HspAI GCGC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 5 cut(s) 15, 23, 44, 66, 128
LpnPI CCDG 5 cut(s) 34, 55, 139, 178, 189
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 163, 191
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 3 cut(s) 20, 41, 125
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 1 cut(s) 10
MluNI TGGCCA 1 cut(s) 60
MnlI CCTC 3 cut(s) 106, 149, 175
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 60
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 1 cut(s) 43
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 3 cut(s) 57, 66, 113
NciI CCSGG 1 cut(s) 43
NdeII GATC 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 40, 174
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 6 cut(s) 83, 88, 91, 109, 137, 140
Psp124BI GAGCTC 2 cut(s) 20, 125
PspFI CCCAGC 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 40, 174
PsuI RGATCY 1 cut(s) 172
SacI GAGCTC 2 cut(s) 20, 125
SatI GCNGC 6 cut(s) 82, 87, 90, 108, 136, 139
Sau3AI GATC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 3 cut(s) 20, 41, 125
SetI ASST 5 cut(s) 20, 33, 125, 186, 194
Sse9I AATT 1 cut(s) 10
SsiI CCGC 8 cut(s) 81, 86, 89, 107, 110, 135, 138, 141
SstI GAGCTC 2 cut(s) 20, 125
StyD4I CCNGG 1 cut(s) 41
TasI AATT 1 cut(s) 10
TauI GCSGC 6 cut(s) 84, 89, 92, 110, 138, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.