Rmu_sc0003238.1_g000022

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003238.1
Physical Location & Seq
Reverse (-)
130317 .. 136818
6502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003238.1_g000022.1.cds

Sequence Viewer

Length: 1509 bp
atgtctcgacagagacctattcacttaatttcacacaagaagattgcaacagcatcggcaaaccaccgaagattgtggacatcccagactagtggtgttgtgatgcatggtgtggagaatgacggtggagagtttacttggcatttggatgtcaatattctgtcgggttcagttggtcgcagtatcaccatggcggccagcagaggcgttgaagtaaagagtttggagttagttcatcggaagaacaacagcttctacttcctacgccccagagtggaagaccgactcctatatatgccggaatgttggaacccgaacccggaaaatatgtggttatatgtgaatagttggtggtccgtgatggtctttccatcatgcttgagcttcatattgagatcaatcggaaataaagagacaaatgtcatctttccttcagatgaggatgacgatgatgattctcatgttgatgacaatatatgcggaaacgtgaacatccccgtaaggatgagaagtcagcagattaagagaatacaaccgcagcctggatccgacatcttggaagtcaaacaaacagagtacgggtacaagcaaggagagactgagatgaagggtgttgcattttattccgtccctctgccaagtgttgttccccctgatattaagacggtgacaagaaaggaccttgctataccagccgtgcattctattctttcttgctcagcacaaagtaataggcaacgtgctgagaattgtccttccagtttctctggagagcttcttttgggttccagtcttccagacaatgaacaagttgctacctttggttcttgtttatctagctcctttccaaaatcttgtcttgctttctgtgtggtgggtgtgcaaatctcaaatgcaggtttggctttgttgggtgtctggacagccgatgtggaatcggcgctgcgacgacgtcggcgtttgagtagccaggaacaaaccaataaaattgctgctcttaccttcaatacctttggaacgttgcaaagggattctcctgcagtcaaactctctccaaattatccggaaccacctgctaaccctacagaggatgcagccaattttgctgaacaacccaagctcatgagtgcagctctggttcaagctgcgaagcaggtgtggcatgttgttctgtttcataacctatgtcaaatgatcagtgtcttcgaaatggatggatcgtgcaatgagtgtgcctttatcgtccaaattcatcccttcttgaaccgtttatctaacacaccactacttgataccttacagtttgatgcattagttgcagcactaccattagccgacggaggtgaagaagcacagctcaaaaggattgcagaactgcaggccgaaaatgttactgttggccaagaactgcagagacaactggaagcagcagaggaggaactaaagcaggtccgcgtgttgttcagccaagctgcagataattgcttgaatttgaagaaaccggattaa

Protein Analysis

502

Amino Acids

55.75

Weight (kDa)

5.74

Isoelectric Point (pI)

65.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021655)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1081, 1144
AatII GACGTC 1 cut(s) 955
Acc36I ACCTGC 4 cut(s) 887, 1081, 1144, 1438
AccII CGCG 1 cut(s) 1455
AccIII TCCGGA 1 cut(s) 1063
AciI CCGC 4 cut(s) 194, 480, 536, 1453
AclI AACGTT 1 cut(s) 1019
AclWI GGATC 3 cut(s) 540, 553, 1225
AcoI YGGCCR 2 cut(s) 195, 1399
AcsI RAATTY 2 cut(s) 1248, 1489
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 952
AfaI GTAC 2 cut(s) 578, 584
AfiI CCNNNNNNNGG 4 cut(s) 274, 319, 542, 1087
AgsI TTSAA 6 cut(s) 212, 1006, 1142, 1264, 1489, 1495
AhlI ACTAGT 1 cut(s) 89
AjnI CCWGG 2 cut(s) 541, 969
AluBI AGCT 9 cut(s) 252, 384, 775, 840, 1120, 1133, 1145, 1357, 1472
AluI AGCT 9 cut(s) 252, 384, 775, 840, 1120, 1133, 1145, 1357, 1472
Alw26I GTCTC 5 cut(s) 7, 9, 407, 590, 1408
AlwI GGATC 3 cut(s) 540, 553, 1225
Aor13HI TCCGGA 1 cut(s) 1063
AoxI GGCC 3 cut(s) 195, 1380, 1399
ApeKI GCWGC 9 cut(s) 538, 943, 992, 1094, 1130, 1145, 1319, 1427, 1472
ApoI RAATTY 2 cut(s) 1248, 1489
AspLEI GCGC 1 cut(s) 943
AspS9I GGNCC 3 cut(s) 354, 679, 1450
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 3 cut(s) 178, 679, 1355
AsuII TTCGAA 1 cut(s) 1206
AvaII GGWCC 3 cut(s) 354, 679, 1450
BalI TGGCCA 1 cut(s) 1401
BamHI GGATCC 1 cut(s) 545
BbsI GAAGAC 3 cut(s) 285, 785, 1195
BbvI GCAGC 9 cut(s) 550, 930, 979, 1106, 1132, 1142, 1331, 1439, 1459
BccI CCATC 3 cut(s) 355, 379, 1208
BceAI ACGGC 1 cut(s) 680
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BciT130I CCWGG 2 cut(s) 543, 971
BclI TGATCA 1 cut(s) 1194
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 5 cut(s) 7, 9, 407, 590, 1408
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 2 cut(s) 90, 837
BfmI CTRYAG 5 cut(s) 1038, 1083, 1376, 1409, 1473
BfoI RGCGCY 1 cut(s) 944
BfuAI ACCTGC 4 cut(s) 887, 1081, 1144, 1438
BlpI GCTNAGC 1 cut(s) 718
Bme1390I CCNGG 3 cut(s) 320, 543, 971
Bme18I GGWCC 3 cut(s) 354, 679, 1450
BmgT120I GGNCC 3 cut(s) 354, 679, 1450
BmiI GGNNCC 4 cut(s) 311, 547, 787, 1068
BmrFI CCNGG 3 cut(s) 320, 543, 971
BmsI GCATC 4 cut(s) 62, 93, 1081, 1297
BoxI GACNNNNGTC 1 cut(s) 419
BpiI GAAGAC 3 cut(s) 285, 785, 1195
BplI GAGNNNNNCTC 2 cut(s) 1117, 1149
BpmI CTGGAG 1 cut(s) 789
Bpu1102I GCTNAGC 1 cut(s) 718
Bpu14I TTCGAA 1 cut(s) 1206
BpuEI CTTGAG 1 cut(s) 400
BpuMI CCSGG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 952
BsaI GGTCTC 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 189
BsaWI WCCGGW 2 cut(s) 1063, 1501
Bsc4I CCNNNNNNNGG 4 cut(s) 274, 319, 542, 1087
Bse1I ACTGG 3 cut(s) 759, 789, 1425
Bse3DI GCAATG 1 cut(s) 1231
BseAI TCCGGA 1 cut(s) 1063
BseBI CCWGG 2 cut(s) 543, 971
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 8 cut(s) 80, 154, 448, 492, 510, 1096, 1219, 1252
BseLI CCNNNNNNNGG 4 cut(s) 274, 319, 542, 1087
BseMI GCAATG 1 cut(s) 1231
BseMII CTCAG 3 cut(s) 591, 732, 735
BseNI ACTGG 3 cut(s) 759, 789, 1425
BseRI GAGGAG 1 cut(s) 1448
BseXI GCAGC 9 cut(s) 550, 930, 979, 1106, 1132, 1142, 1331, 1439, 1459
BsgI GTGCAG 1 cut(s) 1149
Bsh1236I CGCG 1 cut(s) 1455
BshFI GGCC 3 cut(s) 197, 1382, 1401
BsiSI CCGG 4 cut(s) 299, 320, 1064, 1502
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 4 cut(s) 274, 319, 542, 1087
BsmAI GTCTC 5 cut(s) 7, 9, 407, 590, 1408
BsmFI GGGAC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 3 cut(s) 197, 1382, 1401
Bso31I GGTCTC 1 cut(s) 7
Bsp119I TTCGAA 1 cut(s) 1206
Bsp13I TCCGGA 1 cut(s) 1063
Bsp143I GATC 4 cut(s) 395, 545, 1194, 1217
Bsp1720I GCTNAGC 1 cut(s) 718
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 4 cut(s) 194, 480, 536, 1453
BspANI GGCC 3 cut(s) 197, 1382, 1401
BspCNI CTCAG 3 cut(s) 592, 731, 736
BspEI TCCGGA 1 cut(s) 1063
BspFNI CGCG 1 cut(s) 1455
BspHI TCATGA 1 cut(s) 1122
BspLI GGNNCC 4 cut(s) 311, 547, 787, 1068
BspMAI CTGCAG 4 cut(s) 1042, 1380, 1413, 1477
BspMI ACCTGC 4 cut(s) 887, 1081, 1144, 1438
BspPI GGATC 3 cut(s) 540, 553, 1225
BspT104I TTCGAA 1 cut(s) 1206
BspTNI GGTCTC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 1231
BsrI ACTGG 3 cut(s) 759, 789, 1425
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 4 cut(s) 395, 545, 1194, 1217
BssNI GRCGYC 1 cut(s) 952
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 2 cut(s) 543, 971
Bst4CI ACNGT 5 cut(s) 125, 667, 1268, 1302, 1396
BstACI GRCGYC 1 cut(s) 952
BstAPI GCANNNNNTGC 1 cut(s) 1316
BstBI TTCGAA 1 cut(s) 1206
BstC8I GCNNGC 2 cut(s) 199, 1380
BstDEI CTNAG 3 cut(s) 600, 718, 744
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 8 cut(s) 80, 154, 448, 492, 510, 1096, 1219, 1252
BstFNI CGCG 1 cut(s) 1455
BstH2I RGCGCY 1 cut(s) 944
BstHHI GCGC 1 cut(s) 943
BstKTI GATC 4 cut(s) 398, 548, 1197, 1220
BstMAI GTCTC 5 cut(s) 7, 9, 407, 590, 1408
BstMBI GATC 4 cut(s) 395, 545, 1194, 1217
BstMWI GCNNNNNNNGC 5 cut(s) 692, 902, 1103, 1159, 1316
BstNI CCWGG 2 cut(s) 543, 971
BstNSI RCATGY 1 cut(s) 1166
BstPAI GACNNNNGTC 1 cut(s) 419
BstSCI CCNGG 3 cut(s) 318, 541, 969
BstSFI CTRYAG 5 cut(s) 1038, 1083, 1376, 1409, 1473
BstUI CGCG 1 cut(s) 1455
BstV1I GCAGC 9 cut(s) 550, 930, 979, 1106, 1132, 1142, 1331, 1439, 1459
BstV2I GAAGAC 3 cut(s) 285, 785, 1195
BstX2I RGATCY 1 cut(s) 545
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 1 cut(s) 545
BsuRI GGCC 3 cut(s) 197, 1382, 1401
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 8 cut(s) 80, 154, 448, 492, 510, 1096, 1219, 1252
BtsIMutI CAGTG 1 cut(s) 1204
BveI ACCTGC 4 cut(s) 887, 1081, 1144, 1438
Cac8I GCNNGC 2 cut(s) 199, 1380
CciI TCATGA 1 cut(s) 1122
CfoI GCGC 1 cut(s) 943
Cfr13I GGNCC 3 cut(s) 354, 679, 1450
Csp6I GTAC 2 cut(s) 577, 583
CviAII CATG 6 cut(s) 107, 190, 375, 461, 1123, 1163
CviQI GTAC 2 cut(s) 577, 583
DdeI CTNAG 3 cut(s) 600, 718, 744
DpnI GATC 4 cut(s) 397, 547, 1196, 1219
DpnII GATC 4 cut(s) 395, 545, 1194, 1217
EaeI YGGCCR 2 cut(s) 195, 1399
Eco130I CCWWGG 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 7
Eco47I GGWCC 3 cut(s) 354, 679, 1450
Eco57I CTGAAG 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 679
EcoRII CCWGG 2 cut(s) 541, 969
EcoT14I CCWWGG 1 cut(s) 189
EcoT22I ATGCAT 2 cut(s) 108, 1312
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 6 cut(s) 110, 193, 378, 464, 1126, 1166
FaqI GGGAC 1 cut(s) 614
FatI CATG 6 cut(s) 106, 189, 374, 460, 1122, 1162
FbaI TGATCA 1 cut(s) 1194
FokI GGATG 8 cut(s) 67, 161, 455, 479, 517, 1103, 1226, 1239
FspBI CTAG 2 cut(s) 90, 837
GlaI GCGC 1 cut(s) 942
GsuI CTGGAG 1 cut(s) 789
HaeII RGCGCY 1 cut(s) 944
HaeIII GGCC 3 cut(s) 197, 1382, 1401
HapII CCGG 4 cut(s) 299, 320, 1064, 1502
HhaI GCGC 1 cut(s) 943
Hin1I GRCGYC 1 cut(s) 952
Hin1II CATG 6 cut(s) 110, 193, 378, 464, 1126, 1166
Hin6I GCGC 1 cut(s) 941
HinP1I GCGC 1 cut(s) 941
HinfI GANTC 4 cut(s) 285, 455, 935, 1031
HpaII CCGG 4 cut(s) 299, 320, 1064, 1502
HphI GGTGA 3 cut(s) 178, 679, 1355
Hpy166II GTNNAC 3 cut(s) 78, 135, 490
Hpy188I TCNGA 4 cut(s) 240, 404, 436, 550
Hpy188III TCNNGA 7 cut(s) 6, 768, 797, 919, 1064, 1123, 1261
Hpy8I GTNNAC 3 cut(s) 78, 135, 490
Hpy99I CGWCG 4 cut(s) 951, 954, 957, 1340
HpyAV CCTTC 5 cut(s) 441, 601, 765, 1012, 1267
HpyCH4III ACNGT 5 cut(s) 125, 667, 1268, 1302, 1396
HpyCH4IV ACGT 4 cut(s) 486, 739, 952, 1019
HpyF10VI GCNNNNNNNGC 5 cut(s) 692, 902, 1103, 1159, 1316
HpyF3I CTNAG 3 cut(s) 600, 718, 744
HpySE526I ACGT 4 cut(s) 486, 739, 952, 1019
Hsp92I GRCGYC 1 cut(s) 952
Hsp92II CATG 6 cut(s) 110, 193, 378, 464, 1126, 1166
HspAI GCGC 1 cut(s) 941
Kpn2I TCCGGA 1 cut(s) 1063
Ksp22I TGATCA 1 cut(s) 1194
Kzo9I GATC 4 cut(s) 395, 545, 1194, 1217
LmnI GCTCC 1 cut(s) 845
Lsp1109I GCAGC 9 cut(s) 550, 930, 979, 1106, 1132, 1142, 1331, 1439, 1459
LweI GCATC 4 cut(s) 62, 93, 1081, 1297
MaeI CTAG 2 cut(s) 90, 837
MaeII ACGT 4 cut(s) 486, 739, 952, 1019
MaeIII GTNAC 2 cut(s) 667, 1390
MalI GATC 4 cut(s) 397, 547, 1196, 1219
MboI GATC 4 cut(s) 395, 545, 1194, 1217
MboII GAAGA 8 cut(s) 52, 81, 253, 290, 785, 1195, 1358, 1507
MflI RGATCY 1 cut(s) 545
MlsI TGGCCA 1 cut(s) 1401
MluCI AATT 8 cut(s) 27, 748, 987, 1057, 1099, 1248, 1480, 1489
MluNI TGGCCA 1 cut(s) 1401
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 287, 573
MnlI CCTC 7 cut(s) 197, 433, 642, 1081, 1334, 1426, 1429
Mox20I TGGCCA 1 cut(s) 1401
Mph1103I ATGCAT 2 cut(s) 108, 1312
MroI TCCGGA 1 cut(s) 1063
MscI TGGCCA 1 cut(s) 1401
MseI TTAA 4 cut(s) 26, 522, 660, 1507
MslI CAYNNNNRTG 2 cut(s) 147, 465
Msp20I TGGCCA 1 cut(s) 1401
MspI CCGG 4 cut(s) 299, 320, 1064, 1502
MspR9I CCNGG 3 cut(s) 320, 543, 971
Mva1269I GAATGC 1 cut(s) 700
MvaI CCWGG 2 cut(s) 543, 971
MvnI CGCG 1 cut(s) 1455
MwoI GCNNNNNNNGC 5 cut(s) 692, 902, 1103, 1159, 1316
NciI CCSGG 1 cut(s) 320
NcoI CCATGG 1 cut(s) 189
NdeII GATC 4 cut(s) 395, 545, 1194, 1217
NlaIII CATG 6 cut(s) 110, 193, 378, 464, 1126, 1166
NlaIV GGNNCC 4 cut(s) 311, 547, 787, 1068
NmuCI GTSAC 1 cut(s) 667
NsiI ATGCAT 2 cut(s) 108, 1312
NspI RCATGY 1 cut(s) 1166
NspV TTCGAA 1 cut(s) 1206
PagI TCATGA 1 cut(s) 1122
PaqCI CACCTGC 2 cut(s) 1081, 1144
PcsI WCGNNNNNNNCGW 1 cut(s) 955
PctI GAATGC 1 cut(s) 700
PfeI GAWTC 3 cut(s) 455, 935, 1031
PflFI GACNNNGTC 1 cut(s) 951
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PpuMI RGGWCCY 1 cut(s) 679
PshAI GACNNNNGTC 1 cut(s) 419
Psp1406I AACGTT 1 cut(s) 1019
Psp5II RGGWCCY 1 cut(s) 679
Psp6I CCWGG 2 cut(s) 541, 969
PspGI CCWGG 2 cut(s) 541, 969
PspN4I GGNNCC 4 cut(s) 311, 547, 787, 1068
PspPI GGNCC 3 cut(s) 354, 679, 1450
PspPPI RGGWCCY 1 cut(s) 679
PstI CTGCAG 4 cut(s) 1042, 1380, 1413, 1477
PsuI RGATCY 1 cut(s) 545
PsyI GACNNNGTC 1 cut(s) 951
RsaI GTAC 2 cut(s) 578, 584
RsaNI GTAC 2 cut(s) 577, 583
RseI CAYNNNNRTG 2 cut(s) 147, 465
SaqAI TTAA 4 cut(s) 26, 522, 660, 1507
Sau3AI GATC 4 cut(s) 395, 545, 1194, 1217
Sau96I GGNCC 3 cut(s) 354, 679, 1450
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 3 cut(s) 320, 543, 971
SfaNI GCATC 4 cut(s) 62, 93, 1081, 1297
SfcI CTRYAG 5 cut(s) 1038, 1083, 1376, 1409, 1473
SfuI TTCGAA 1 cut(s) 1206
SinI GGWCC 3 cut(s) 354, 679, 1450
SmiMI CAYNNNNRTG 2 cut(s) 147, 465
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 8 cut(s) 27, 748, 987, 1057, 1099, 1248, 1480, 1489
SsiI CCGC 4 cut(s) 194, 480, 536, 1453
SspI AATATT 1 cut(s) 157
SspMI CTAG 2 cut(s) 90, 837
StyD4I CCNGG 3 cut(s) 318, 541, 969
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 5 cut(s) 125, 667, 1268, 1302, 1396
TaiI ACGT 4 cut(s) 489, 742, 955, 1022
TaqI TCGA 2 cut(s) 7, 1206
TaqII GACCGA 1 cut(s) 297
TasI AATT 8 cut(s) 27, 748, 987, 1057, 1099, 1248, 1480, 1489
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 3 cut(s) 455, 935, 1031
Tru1I TTAA 4 cut(s) 26, 522, 660, 1507
Tru9I TTAA 4 cut(s) 26, 522, 660, 1507
TscAI CASTG 1 cut(s) 1204
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 9 cut(s) 538, 943, 992, 1094, 1130, 1145, 1319, 1427, 1472
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 6 cut(s) 224, 376, 620, 819, 1166, 1241
TspGWI ACGGA 3 cut(s) 346, 616, 1353
TspRI CASTG 1 cut(s) 1204
Tth111I GACNNNGTC 1 cut(s) 951
VpaK11BI GGWCC 3 cut(s) 354, 679, 1450
XapI RAATTY 2 cut(s) 1248, 1489
XceI RCATGY 1 cut(s) 1166
XspI CTAG 2 cut(s) 90, 837
ZraI GACGTC 1 cut(s) 953
Zsp2I ATGCAT 2 cut(s) 108, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.