Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008559.1

Orthogroup ID

OG0021655

Physical Location & Seq

Genomic Coordinates Forward (+)

54118 .. 54556

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008559.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggttccgaatcggagctccagaaccgacgttttgggctccgggacgggctgttacggccacgggagcataatgtggggtggcgtggcggccaagagtgtcggtgcggcggaggccgtgagctctagaacaagcggcggtggagagttgaagagaggaatggggagtgtggatccggaagaggccaatgcggctgaccggagcaaccgggctgcggccttgacaggtctacggcggctgggggaggcggtgagggagtgtgaggaggctgtacatgaagaagaaagaaagaagatggtcgtggttttggaagagagagagaggacccagaaaggaagggaaaaaaaaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0023051 GO:0023056 GO:0033993 GO:0042221 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0097305 GO:1901419 GO:1901421 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_1 TPR_11 TPR_16 TPR_19 TPR_2 TPR_8 Thioredoxin

Protein Analysis

117

Amino Acids

12.46

Weight (kDa)

8.68

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021655)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002589.1_g000027 Rmu_sc0003238.1_g000022 Rmu_sc0008559.1_g000009
rosa_rugosa	Rorug06G0393200
rosa_samantha	Rh4CG057500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	229
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	9 cut(s)	89, 107, 110, 135, 138, 191, 215, 235, 248
AclWI	GGATC	2 cut(s)	167, 180
AcoI	YGGCCR	2 cut(s)	58, 90
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	151
AluBI	AGCT	2 cut(s)	18, 123
AluI	AGCT	2 cut(s)	18, 123
Alw21I	GWGCWC	2 cut(s)	20, 125
AlwI	GGATC	2 cut(s)	167, 180
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	5 cut(s)	58, 90, 114, 183, 216
ApeKI	GCWGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	2 cut(s)	43, 209
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	172
BanII	GRGCYC	3 cut(s)	20, 41, 125
Bbv12I	GWGCWC	2 cut(s)	20, 125
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	3 cut(s)	73, 101, 248
BcnI	CCSGG	2 cut(s)	43, 209
BfaI	CTAG	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	191
BisI	GCNGC	7 cut(s)	90, 108, 136, 192, 213, 216, 236
BlsI	GCNGC	7 cut(s)	91, 109, 137, 193, 214, 217, 237
Bme1390I	CCNGG	2 cut(s)	43, 209
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	4 cut(s)	6, 40, 174, 326
BmrFI	CCNGG	2 cut(s)	43, 209
BpmI	CTGGAG	1 cut(s)	4
BpuMI	CCSGG	2 cut(s)	43, 209
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	2 cut(s)	175, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
BseAI	TCCGGA	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	199
BseYI	CCCAGC	1 cut(s)	238
BshFI	GGCC	5 cut(s)	60, 92, 116, 185, 218
BsiHKAI	GWGCWC	2 cut(s)	20, 125
BsiSI	CCGG	4 cut(s)	42, 176, 199, 208
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	5 cut(s)	60, 92, 116, 185, 218
Bsp1286I	GDGCHC	3 cut(s)	20, 41, 125
Bsp13I	TCCGGA	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	9 cut(s)	89, 107, 110, 135, 138, 191, 215, 235, 248
BspANI	GGCC	5 cut(s)	60, 92, 116, 185, 218
BspEI	TCCGGA	1 cut(s)	175
BspLI	GGNNCC	4 cut(s)	6, 40, 174, 326
BspPI	GGATC	2 cut(s)	167, 180
BsrGI	TGTACA	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	172
Bst6I	CTCTTC	3 cut(s)	146, 174, 306
BstAUI	TGTACA	1 cut(s)	271
BstDSI	CCRYGG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 66, 113, 191
BstSCI	CCNGG	2 cut(s)	41, 207
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	5 cut(s)	60, 92, 116, 185, 218
BtgI	CCRYGG	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	1 cut(s)	272
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	2 cut(s)	58, 90
Eam1104I	CTCTTC	3 cut(s)	146, 174, 306
EarI	CTCTTC	3 cut(s)	146, 174, 306
EciI	GGCGGA	1 cut(s)	125
Ecl136II	GAGCTC	2 cut(s)	18, 123
Eco24I	GRGCYC	3 cut(s)	20, 41, 125
Eco47I	GGWCC	1 cut(s)	324
Eco53kI	GAGCTC	2 cut(s)	18, 123
EcoICRI	GAGCTC	2 cut(s)	18, 123
EcoO109I	RGGNCCY	1 cut(s)	324
EcoT38I	GRGCYC	3 cut(s)	20, 41, 125
FaeI	CATG	1 cut(s)	278
FaiI	YATR	2 cut(s)	71, 276
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	7 cut(s)	90, 108, 136, 192, 213, 216, 236
FriOI	GRGCYC	3 cut(s)	20, 41, 125
Fsp4HI	GCNGC	7 cut(s)	90, 108, 136, 192, 213, 216, 236
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	7 cut(s)	90, 108, 136, 192, 213, 216, 236
GsaI	CCCAGC	1 cut(s)	242
GsuI	CTGGAG	1 cut(s)	4
HaeIII	GGCC	5 cut(s)	60, 92, 116, 185, 218
HapII	CCGG	4 cut(s)	42, 176, 199, 208
Hin1II	CATG	1 cut(s)	278
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	4 cut(s)	42, 176, 199, 208
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	3 cut(s)	9, 15, 353
Hpy188III	TCNNGA	3 cut(s)	21, 126, 176
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 66, 113, 191
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	5 cut(s)	15, 23, 44, 66, 201
LpnPI	CCDG	8 cut(s)	34, 55, 189, 210, 212, 221, 224, 341
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	6 cut(s)	163, 191, 290, 293, 304, 323
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	3 cut(s)	20, 41, 125
MnlI	CCTC	8 cut(s)	106, 149, 175, 238, 246, 256, 259, 315
MroI	TCCGGA	1 cut(s)	175
MspI	CCGG	4 cut(s)	42, 176, 199, 208
MspR9I	CCNGG	2 cut(s)	43, 209
MwoI	GCNNNNNNNGC	4 cut(s)	57, 66, 113, 191
NciI	CCSGG	2 cut(s)	43, 209
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	4 cut(s)	6, 40, 174, 326
PfeI	GAWTC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	41
PkrI	GCNGC	7 cut(s)	91, 109, 137, 193, 214, 217, 237
PpuMI	RGGWCCY	1 cut(s)	324
Psp124BI	GAGCTC	2 cut(s)	20, 125
Psp5II	RGGWCCY	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	238
PspN4I	GGNNCC	4 cut(s)	6, 40, 174, 326
PspPI	GGNCC	1 cut(s)	324
PspPPI	RGGWCCY	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
SacI	GAGCTC	2 cut(s)	20, 125
SatI	GCNGC	7 cut(s)	90, 108, 136, 192, 213, 216, 236
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	43, 209
SduI	GDGCHC	3 cut(s)	20, 41, 125
SetI	ASST	4 cut(s)	20, 33, 125, 229
SinI	GGWCC	1 cut(s)	324
SsiI	CCGC	9 cut(s)	89, 107, 110, 135, 138, 191, 215, 235, 248
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	2 cut(s)	20, 125
StyD4I	CCNGG	2 cut(s)	41, 207
TaiI	ACGT	1 cut(s)	33
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	6 cut(s)	92, 110, 138, 194, 218, 238
TfiI	GAWTC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	324
XbaI	TCTAGA	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	229
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.