Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002678.1

Orthogroup ID

OG0019809

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1389

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002678.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 823 bp

atgacggagatggccggaaaaaggttgccggtggtcgccggaaaagtggcaggaaactggtggccgaagctaggcagggttgctgcaggggatgtgcaggtggtgtgtagggatgtgtggaggctgtgcaaggactgtgcagggttggcaggcagatgctcgacaggtgctaggcagctgtcggcaggggctatgcgaagcttttggcagatgttgacaggggcaggcacaggggtcttggcagatgtaggcacagggctcggcagatctcggcagctgctcggcagggctcgcaggggtaggcacatggcaggcacaaggcaggggcatgtccgatttttccgacggccggttccagtggttccgcagccggttccagtggttccgcagccggttctaggctccttgagactagggcttcgatatgtggggcggtggttgcaggattttgaaggttacgaaattagggttttcagggttagggattccaacacaaagactccgtcttcctcttcctctcactgcagtacgcgagctctgaaaatggctctgtcttcactgcgactcccggtctcgctttggcttccaaaacacccaaaccagagcttccatttttcaaacccaaaaataccctcaagattgaaccttatttactgctgctccccctgcgctgccactgctcaacaaaccttaacccgcactgaaaaatggcaacccgttcgaaagaagaaagtggttctccgggtcgggtatgtgggcaccgattaccgaggtctgcaaatgcaaagagatgacccttcaatatctagtgagtttcttcttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

274

Amino Acids

30.38

Weight (kDa)

11.18

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019809)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g11770 pycom12397g00100
rosa_multiflora	Rmu_sc0002678.1_g000001 Rmu_sc0003576.1_g000002 Rmu_sc0009780.1_g000004
rosa_rugosa	Rorug01G0444200 Rorug04G0209300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	758
AccII	CGCG	1 cut(s)	532
AciI	CCGC	4 cut(s)	365, 386, 433, 697
AcoI	YGGCCR	3 cut(s)	12, 62, 347
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	4 cut(s)	21, 71, 349, 398
AgsI	TTSAA	4 cut(s)	452, 618, 643, 801
AhdI	GACNNNNNGTC	1 cut(s)	569
AluBI	AGCT	6 cut(s)	70, 178, 201, 277, 536, 606
AluI	AGCT	6 cut(s)	70, 178, 201, 277, 536, 606
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	2 cut(s)	403, 577
AoxI	GGCC	3 cut(s)	12, 62, 347
ApeKI	GCWGC	8 cut(s)	83, 175, 274, 277, 367, 388, 657, 671
ArsI	GACNNNNNNTTYG	4 cut(s)	402, 434, 488, 520
AspLEI	GCGC	1 cut(s)	671
AsuC2I	CCSGG	2 cut(s)	569, 743
AsuII	TTCGAA	1 cut(s)	721
BaeGI	GKGCMC	1 cut(s)	761
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	3 cut(s)	261, 292, 538
BbsI	GAAGAC	2 cut(s)	498, 546
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	8 cut(s)	70, 187, 264, 286, 379, 400, 644, 658
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	1 cut(s)	362
BcgI	CGANNNNNNTGC	4 cut(s)	241, 275, 701, 735
BcnI	CCSGG	2 cut(s)	569, 743
BcoDI	GTCTC	2 cut(s)	403, 577
BfaI	CTAG	5 cut(s)	71, 171, 398, 413, 807
BfmI	CTRYAG	2 cut(s)	84, 523
BfuAI	ACCTGC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	8 cut(s)	84, 176, 275, 278, 368, 389, 658, 672
BlsI	GCNGC	8 cut(s)	85, 177, 276, 279, 369, 390, 659, 673
Bme1390I	CCNGG	2 cut(s)	569, 743
BmeRI	GACNNNNNGTC	1 cut(s)	569
BmiI	GGNNCC	6 cut(s)	354, 363, 375, 384, 403, 760
BmrFI	CCNGG	2 cut(s)	569, 743
BmsI	GCATC	1 cut(s)	146
BpiI	GAAGAC	2 cut(s)	498, 546
Bpu14I	TTCGAA	1 cut(s)	721
BpuEI	CTTGAG	2 cut(s)	427, 619
BpuMI	CCSGG	2 cut(s)	569, 743
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	1 cut(s)	769
BsaXI	ACNNNNNCTCC	6 cut(s)	484, 514, 549, 579, 644, 674
Bsc4I	CCNNNNNNNGG	4 cut(s)	21, 71, 349, 398
Bse118I	RCCGGY	4 cut(s)	28, 349, 370, 391
Bse1I	ACTGG	3 cut(s)	62, 356, 377
BseDI	CCNNGG	1 cut(s)	769
BseGI	GGATG	2 cut(s)	97, 118
BseLI	CCNNNNNNNGG	4 cut(s)	21, 71, 349, 398
BseNI	ACTGG	3 cut(s)	62, 356, 377
BseSI	GKGCMC	1 cut(s)	761
BseX3I	CGGCCG	1 cut(s)	347
BseXI	GCAGC	8 cut(s)	70, 187, 264, 286, 379, 400, 644, 658
BsgI	GTGCAG	2 cut(s)	116, 159
Bsh1236I	CGCG	1 cut(s)	532
Bsh1285I	CGRYCG	1 cut(s)	350
BshFI	GGCC	3 cut(s)	14, 64, 349
BshNI	GGYRCC	1 cut(s)	758
BsiEI	CGRYCG	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	8 cut(s)	15, 29, 39, 350, 371, 392, 569, 742
BslI	CCNNNNNNNGG	4 cut(s)	21, 71, 349, 398
BsmAI	GTCTC	2 cut(s)	403, 577
BsnI	GGCC	3 cut(s)	14, 64, 349
Bso31I	GGTCTC	1 cut(s)	577
Bsp119I	TTCGAA	1 cut(s)	721
Bsp1286I	GDGCHC	4 cut(s)	261, 292, 538, 761
Bsp143I	GATC	1 cut(s)	266
BspACI	CCGC	4 cut(s)	365, 386, 433, 697
BspANI	GGCC	3 cut(s)	14, 64, 349
BspFNI	CGCG	1 cut(s)	532
BspLI	GGNNCC	6 cut(s)	354, 363, 375, 384, 403, 760
BspMAI	CTGCAG	2 cut(s)	88, 527
BspMI	ACCTGC	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	721
BspT107I	GGYRCC	1 cut(s)	758
BspTNI	GGTCTC	1 cut(s)	577
BsrFI	RCCGGY	4 cut(s)	28, 349, 370, 391
BsrI	ACTGG	3 cut(s)	62, 356, 377
BssAI	RCCGGY	4 cut(s)	28, 349, 370, 391
BssECI	CCNNGG	1 cut(s)	769
BssMI	GATC	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	721
BstC8I	GCNNGC	5 cut(s)	151, 226, 292, 313, 534
BstF5I	GGATG	2 cut(s)	97, 118
BstFNI	CGCG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	1 cut(s)	269
BstMAI	GTCTC	2 cut(s)	403, 577
BstMBI	GATC	1 cut(s)	266
BstMCI	CGRYCG	1 cut(s)	350
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 291, 439, 666, 677
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	567, 741
BstSFI	CTRYAG	2 cut(s)	84, 523
BstSLI	GKGCMC	1 cut(s)	761
BstUI	CGCG	1 cut(s)	532
BstV1I	GCAGC	8 cut(s)	70, 187, 264, 286, 379, 400, 644, 658
BstV2I	GAAGAC	2 cut(s)	498, 546
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BstZI	CGGCCG	1 cut(s)	347
BsuRI	GGCC	3 cut(s)	14, 64, 349
BtsCI	GGATG	2 cut(s)	97, 118
BtsI	GCAGTG	3 cut(s)	520, 557, 675
BtsIMutI	CAGTG	6 cut(s)	363, 384, 520, 557, 675, 699
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	5 cut(s)	151, 226, 292, 313, 534
CfoI	GCGC	1 cut(s)	671
Cfr10I	RCCGGY	4 cut(s)	28, 349, 370, 391
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	2 cut(s)	307, 329
CviQI	GTAC	1 cut(s)	528
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DriI	GACNNNNNGTC	1 cut(s)	569
EaeI	YGGCCR	3 cut(s)	12, 62, 347
EagI	CGGCCG	1 cut(s)	347
Eam1104I	CTCTTC	1 cut(s)	517
Eam1105I	GACNNNNNGTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	517
Ecl136II	GAGCTC	1 cut(s)	536
EclXI	CGGCCG	1 cut(s)	347
Eco24I	GRGCYC	3 cut(s)	261, 292, 538
Eco31I	GGTCTC	1 cut(s)	577
Eco52I	CGGCCG	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	536
EcoT38I	GRGCYC	3 cut(s)	261, 292, 538
FaeI	CATG	2 cut(s)	310, 332
FaiI	YATR	5 cut(s)	194, 308, 330, 426, 753
FatI	CATG	2 cut(s)	306, 328
FauI	CCCGC	1 cut(s)	704
Fnu4HI	GCNGC	8 cut(s)	84, 176, 275, 278, 368, 389, 658, 672
FokI	GGATG	2 cut(s)	104, 125
FriOI	GRGCYC	3 cut(s)	261, 292, 538
Fsp4HI	GCNGC	8 cut(s)	84, 176, 275, 278, 368, 389, 658, 672
FspBI	CTAG	5 cut(s)	71, 171, 398, 413, 807
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	8 cut(s)	84, 176, 275, 278, 368, 389, 658, 672
HaeIII	GGCC	3 cut(s)	14, 64, 349
HapII	CCGG	8 cut(s)	15, 29, 39, 350, 371, 392, 569, 742
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	2 cut(s)	310, 332
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	3 cut(s)	485, 499, 564
HpaII	CCGG	8 cut(s)	15, 29, 39, 350, 371, 392, 569, 742
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	3 cut(s)	335, 344, 540
Hpy188III	TCNNGA	1 cut(s)	636
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	348
HpyAV	CCTTC	2 cut(s)	446, 807
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	8 cut(s)	86, 97, 129, 140, 442, 525, 778, 784
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 291, 439, 666, 677
Hsp92II	CATG	2 cut(s)	310, 332
HspAI	GCGC	1 cut(s)	669
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	2 cut(s)	407, 665
Lsp1109I	GCAGC	8 cut(s)	70, 187, 264, 286, 379, 400, 644, 658
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	5 cut(s)	71, 171, 398, 413, 807
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	6 cut(s)	498, 504, 546, 739, 809, 812
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	4 cut(s)	261, 292, 538, 761
MluCI	AATT	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	493, 558
MmeI	TCCRAC	2 cut(s)	367, 513
MnlI	CCTC	5 cut(s)	114, 520, 526, 643, 764
MseI	TTAA	1 cut(s)	692
MspA1I	CMGCKG	2 cut(s)	178, 277
MspI	CCGG	8 cut(s)	15, 29, 39, 350, 371, 392, 569, 742
MspR9I	CCNGG	2 cut(s)	569, 743
MvnI	CGCG	1 cut(s)	532
MwoI	GCNNNNNNNGC	5 cut(s)	146, 291, 439, 666, 677
NciI	CCSGG	2 cut(s)	569, 743
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	310, 332
NlaIV	GGNNCC	6 cut(s)	354, 363, 375, 384, 403, 760
NmeAIII	GCCGAG	3 cut(s)	240, 250, 261
NspI	RCATGY	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	721
PaqCI	CACCTGC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	502
PkrI	GCNGC	8 cut(s)	85, 177, 276, 279, 369, 390, 659, 673
PleI	GAGTC	2 cut(s)	493, 558
PpsI	GAGTC	2 cut(s)	493, 558
Psp124BI	GAGCTC	1 cut(s)	538
PspN4I	GGNNCC	6 cut(s)	354, 363, 375, 384, 403, 760
PsrI	GAACNNNNNNTAC	2 cut(s)	635, 667
PstI	CTGCAG	2 cut(s)	88, 527
PsuI	RGATCY	1 cut(s)	266
PsyI	GACNNNGTC	1 cut(s)	502
PvuII	CAGCTG	2 cut(s)	178, 277
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
SacI	GAGCTC	1 cut(s)	538
SaqAI	TTAA	1 cut(s)	692
SatI	GCNGC	8 cut(s)	84, 176, 275, 278, 368, 389, 658, 672
Sau3AI	GATC	1 cut(s)	266
SchI	GAGTC	2 cut(s)	493, 558
ScrFI	CCNGG	2 cut(s)	569, 743
SduI	GDGCHC	4 cut(s)	261, 292, 538, 761
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	2 cut(s)	84, 523
SfuI	TTCGAA	1 cut(s)	721
SmlI	CTYRAG	2 cut(s)	406, 634
SmoI	CTYRAG	2 cut(s)	406, 634
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	4 cut(s)	365, 386, 433, 697
SspMI	CTAG	5 cut(s)	71, 171, 398, 413, 807
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	567, 741
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	3 cut(s)	161, 421, 721
TasI	AATT	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	692
Tru9I	TTAA	1 cut(s)	692
TscAI	CASTG	6 cut(s)	363, 384, 527, 564, 682, 706
TseI	GCWGC	8 cut(s)	83, 175, 274, 277, 367, 388, 657, 671
TspGWI	ACGGA	2 cut(s)	20, 492
TspRI	CASTG	6 cut(s)	363, 384, 527, 564, 682, 706
Tth111I	GACNNNGTC	1 cut(s)	502
XceI	RCATGY	1 cut(s)	332
XspI	CTAG	5 cut(s)	71, 171, 398, 413, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.