Rmu_sc0003576.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003576.1
OG0019809
Physical Location & Seq
Reverse (-)
4263 .. 4847
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003576.1_g000002.1.cds

Sequence Viewer

Length: 585 bp
atggccggaaaaaggtcgccggaggtcacctggaaagtggccggaaactggtggccggagctaagcaggttggtgctgggcagttgcggaggcgtgcagggctgctgcagggcttgtgcggagggtgtgcagggcctgtcggcaggtgctgcgcaggggctcggcaggtgtgtgcggggctatcggcagctgtcagcaggtgtgtgcggggctatcggcagctgtcagcaggtgtgtgcgaggctgttggcaggggcaggcacttgtctcagcaggtctcggcacatgcagacacaaggcttggcaagggcaggcactcgtctcggcaggtcttggcaaatgcaggcacaaggctcggcaggggcaggcacaagactcggcaggcagctgctcggcagagctcgcaggggcaggcacaaggcaagggccggtccgatttttccgactgccagttcaggggttttccggcaggttctgtcgccggttctgggctccttgggaatagggcttcgatatgtggggcggtggtttcaagattttgaaggttacgaaattaaggttttcagggttagggcttcgtgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

20.53

Weight (kDa)

11.34

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019809)

Species Orthologous Gene IDs
pyrus_communis pycom01g11770 pycom12397g00100
rosa_multiflora Rmu_sc0002678.1_g000001 Rmu_sc0003576.1_g000002 Rmu_sc0009780.1_g000004
rosa_rugosa Rorug01G0444200 Rorug04G0209300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 134, 156, 188, 220
Acc16I TGCGCA 1 cut(s) 153
Acc36I ACCTGC 8 cut(s) 57, 134, 156, 188, 220, 264, 318, 460
AciI CCGC 5 cut(s) 87, 119, 175, 207, 523
AcoI YGGCCR 3 cut(s) 3, 39, 53
AfiI CCNNNNNNNGG 4 cut(s) 12, 48, 456, 488
AgsI TTSAA 2 cut(s) 533, 542
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 5 cut(s) 61, 190, 222, 388, 401
AluI AGCT 5 cut(s) 61, 190, 222, 388, 401
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 3 cut(s) 272, 282, 326
AlwNI CAGNNNCTG 3 cut(s) 136, 149, 475
AoxI GGCC 5 cut(s) 3, 39, 53, 133, 426
ApeKI GCWGC 7 cut(s) 102, 105, 149, 187, 219, 385, 388
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 3 cut(s) 133, 426, 431
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 431
BanII GRGCYC 3 cut(s) 162, 403, 494
Bbv12I GWGCWC 1 cut(s) 403
BbvI GCAGC 7 cut(s) 89, 92, 136, 199, 231, 375, 397
BcgI CGANNNNNNTGC 6 cut(s) 304, 336, 338, 358, 370, 392
BciT130I CCWGG 1 cut(s) 31
BcoDI GTCTC 3 cut(s) 272, 282, 326
BfmI CTRYAG 1 cut(s) 106
BfuAI ACCTGC 8 cut(s) 57, 134, 156, 188, 220, 264, 318, 460
BisI GCNGC 7 cut(s) 103, 106, 150, 188, 220, 386, 389
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 7 cut(s) 104, 107, 151, 189, 221, 387, 390
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 431
BmgT120I GGNCC 3 cut(s) 133, 426, 431
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 1 cut(s) 31
Bpu1102I GCTNAGC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 495
Bsc4I CCNNNNNNNGG 4 cut(s) 12, 48, 456, 488
Bse118I RCCGGY 2 cut(s) 428, 481
Bse1I ACTGG 2 cut(s) 53, 450
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 495
BseLI CCNNNNNNNGG 4 cut(s) 12, 48, 456, 488
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 2 cut(s) 53, 450
BseXI GCAGC 7 cut(s) 89, 92, 136, 199, 231, 375, 397
BseYI CCCAGC 1 cut(s) 76
BsgI GTGCAG 2 cut(s) 116, 149
BshFI GGCC 5 cut(s) 5, 41, 55, 135, 428
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 7 cut(s) 6, 20, 42, 56, 429, 466, 482
BslI CCNNNNNNNGG 4 cut(s) 12, 48, 456, 488
BsmAI GTCTC 3 cut(s) 272, 282, 326
BsmBI CGTCTC 1 cut(s) 326
BsnI GGCC 5 cut(s) 5, 41, 55, 135, 428
Bso31I GGTCTC 1 cut(s) 282
Bsp1286I GDGCHC 3 cut(s) 162, 403, 494
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 5 cut(s) 87, 119, 175, 207, 523
BspANI GGCC 5 cut(s) 5, 41, 55, 135, 428
BspCNI CTCAG 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 493
BspMAI CTGCAG 1 cut(s) 110
BspMI ACCTGC 8 cut(s) 57, 134, 156, 188, 220, 264, 318, 460
BspTNI GGTCTC 1 cut(s) 282
BsrFI RCCGGY 2 cut(s) 428, 481
BsrI ACTGG 2 cut(s) 53, 450
BssAI RCCGGY 2 cut(s) 428, 481
BssECI CCNNGG 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 149
BstC8I GCNNGC 8 cut(s) 95, 259, 313, 345, 367, 383, 403, 413
BstDEI CTNAG 2 cut(s) 62, 269
BstEII GGTNACC 1 cut(s) 25
BstHHI GCGC 1 cut(s) 154
BstMAI GTCTC 3 cut(s) 272, 282, 326
BstMWI GCNNNNNNNGC 3 cut(s) 99, 149, 402
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 289
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 106
BstV1I GCAGC 7 cut(s) 89, 92, 136, 199, 231, 375, 397
BsuRI GGCC 5 cut(s) 5, 41, 55, 135, 428
BveI ACCTGC 8 cut(s) 57, 134, 156, 188, 220, 264, 318, 460
Cac8I GCNNGC 8 cut(s) 95, 259, 313, 345, 367, 383, 403, 413
CaiI CAGNNNCTG 3 cut(s) 136, 149, 475
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 2 cut(s) 428, 481
Cfr13I GGNCC 3 cut(s) 133, 426, 431
CpoI CGGWCCG 1 cut(s) 431
CspI CGGWCCG 1 cut(s) 431
CviAII CATG 1 cut(s) 286
DdeI CTNAG 2 cut(s) 62, 269
EaeI YGGCCR 3 cut(s) 3, 39, 53
Ecl136II GAGCTC 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 3 cut(s) 162, 403, 494
Eco31I GGTCTC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 431
Eco53kI GAGCTC 1 cut(s) 401
Eco91I GGTNACC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 133
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 495
EcoT38I GRGCYC 3 cut(s) 162, 403, 494
ErhI CCWWGG 1 cut(s) 495
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 1 cut(s) 289
FaiI YATR 2 cut(s) 287, 516
FatI CATG 1 cut(s) 285
FauI CCCGC 2 cut(s) 168, 200
Fnu4HI GCNGC 7 cut(s) 103, 106, 150, 188, 220, 386, 389
FriOI GRGCYC 3 cut(s) 162, 403, 494
Fsp4HI GCNGC 7 cut(s) 103, 106, 150, 188, 220, 386, 389
FspI TGCGCA 1 cut(s) 153
GlaI GCGC 1 cut(s) 153
GluI GCNGC 7 cut(s) 103, 106, 150, 188, 220, 386, 389
GsaI CCCAGC 1 cut(s) 80
HaeIII GGCC 5 cut(s) 5, 41, 55, 135, 428
HapII CCGG 7 cut(s) 6, 20, 42, 56, 429, 466, 482
HhaI GCGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 1 cut(s) 375
HpaII CCGG 7 cut(s) 6, 20, 42, 56, 429, 466, 482
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 435, 444
Hpy188III TCNNGA 1 cut(s) 533
HpyAV CCTTC 1 cut(s) 536
HpyCH4V TGCA 5 cut(s) 97, 108, 130, 289, 343
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 149, 402
HpyF3I CTNAG 2 cut(s) 62, 269
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 152
LmnI GCTCC 2 cut(s) 58, 497
Lsp1109I GCAGC 7 cut(s) 89, 92, 136, 199, 231, 375, 397
MaeIII GTNAC 2 cut(s) 25, 545
MhlI GDGCHC 3 cut(s) 162, 403, 494
MluCI AATT 1 cut(s) 552
MlyI GAGTC 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 4 cut(s) 16, 83, 115, 234
MseI TTAA 1 cut(s) 555
MspA1I CMGCKG 3 cut(s) 190, 222, 388
MspI CCGG 7 cut(s) 6, 20, 42, 56, 429, 466, 482
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 99, 149, 402
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 493
NmeAIII GCCGAG 6 cut(s) 141, 259, 303, 335, 357, 372
NmuCI GTSAC 1 cut(s) 25
NsbI TGCGCA 1 cut(s) 153
NspI RCATGY 1 cut(s) 289
PaqCI CACCTGC 4 cut(s) 134, 156, 188, 220
PkrI GCNGC 7 cut(s) 104, 107, 151, 189, 221, 387, 390
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 29
PspEI GGTNACC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 3 cut(s) 133, 426, 431
PstI CTGCAG 1 cut(s) 110
PstNI CAGNNNCTG 3 cut(s) 136, 149, 475
PvuII CAGCTG 3 cut(s) 190, 222, 388
Rsr2I CGGWCCG 1 cut(s) 431
RsrII CGGWCCG 1 cut(s) 431
SacI GAGCTC 1 cut(s) 403
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 7 cut(s) 103, 106, 150, 188, 220, 386, 389
Sau96I GGNCC 3 cut(s) 133, 426, 431
SchI GAGTC 1 cut(s) 369
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 3 cut(s) 162, 403, 494
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 1 cut(s) 431
Sse9I AATT 1 cut(s) 552
SsiI CCGC 5 cut(s) 87, 119, 175, 207, 523
SstI GAGCTC 1 cut(s) 403
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 495
TaqI TCGA 1 cut(s) 511
TasI AATT 1 cut(s) 552
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 7 cut(s) 102, 105, 149, 187, 219, 385, 388
Tsp45I GTSAC 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 431
XceI RCATGY 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.