Rmu_sc0009780.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009780.1
OG0019809
Physical Location & Seq
Forward (+)
6558 .. 7461
904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009780.1_g000004.1.cds

Sequence Viewer

Length: 522 bp
atggcacaacacgtgaccgacgtgcacaaggctcggcaggggcaggcactcgtctctgcagctctcggcagctgctcgatagggctcacaggggcaggcacagggcaggcacaagactcagcaggtctcggcagctctcgacagctgctcggtagagctcgcaggggcaggcacaaggcaggggccggtccgatttttcctatggccggttcaggggttttccggccggttccggtggttccgccgccggttctgggctccttgggaatagggcttcgatatgtggggcggtggtttcaggattgtgaaggttacgaaattagggttttcaaggggacactgttccctgggattggctttgggcctttcctgcgcagcttaggtggaagtcgaagaaggcccccttccggggggcccgagccatcagcgagataccactctggaagagctagaattctaaccttgtgtcaggacctacgggccaagggacattctcaggtagacagtttctatggggcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.12

Weight (kDa)

11.21

Isoelectric Point (pI)

61.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019809)

Species Orthologous Gene IDs
pyrus_communis pycom01g11770 pycom12397g00100
rosa_multiflora Rmu_sc0002678.1_g000001 Rmu_sc0003576.1_g000002 Rmu_sc0009780.1_g000004
rosa_rugosa Rorug01G0444200 Rorug04G0209300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 501
AciI CCGC 3 cut(s) 242, 245, 289
AcoI YGGCCR 2 cut(s) 204, 224
AcsI RAATTY 1 cut(s) 453
AcvI CACGTG 1 cut(s) 13
AfiI CCNNNNNNNGG 8 cut(s) 206, 213, 254, 353, 407, 408, 409, 410
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 1 cut(s) 331
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 7 cut(s) 62, 72, 135, 145, 158, 378, 449
AluI AGCT 7 cut(s) 62, 72, 135, 145, 158, 378, 449
Alw21I GWGCWC 2 cut(s) 27, 160
Alw26I GTCTC 2 cut(s) 58, 131
Alw44I GTGCAC 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 7 cut(s) 183, 204, 224, 362, 398, 413, 480
ApaI GGGCCC 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 6 cut(s) 59, 69, 72, 132, 145, 375
ApoI RAATTY 1 cut(s) 453
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 8 cut(s) 183, 188, 362, 399, 413, 414, 472, 480
AsuC2I CCSGG 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 2 cut(s) 188, 472
BaeGI GKGCMC 2 cut(s) 27, 417
BanII GRGCYC 4 cut(s) 87, 160, 260, 417
BbrPI CACGTG 1 cut(s) 13
Bbv12I GWGCWC 2 cut(s) 27, 160
BbvI GCAGC 6 cut(s) 59, 71, 81, 132, 144, 387
BccI CCATC 1 cut(s) 430
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BciT130I CCWGG 1 cut(s) 348
BcnI CCSGG 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 58, 131
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 113
BisI GCNGC 7 cut(s) 60, 70, 73, 133, 146, 245, 376
BlsI GCNGC 7 cut(s) 61, 71, 74, 134, 147, 246, 377
Bme1390I CCNGG 2 cut(s) 348, 409
Bme18I GGWCC 2 cut(s) 188, 472
BmeT110I CYCGRG 1 cut(s) 416
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 8 cut(s) 183, 188, 362, 399, 413, 414, 472, 480
BmiI GGNNCC 7 cut(s) 184, 231, 240, 259, 401, 414, 415
BmrFI CCNGG 2 cut(s) 348, 409
Bpu10I CCTNAGC 1 cut(s) 379
BpuMI CCSGG 1 cut(s) 409
BsaAI YACGTR 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 5 cut(s) 261, 346, 347, 408, 483
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 8 cut(s) 206, 213, 254, 353, 407, 408, 409, 410
Bse118I RCCGGY 4 cut(s) 185, 206, 226, 247
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 5 cut(s) 261, 346, 347, 408, 483
BseLI CCNNNNNNNGG 8 cut(s) 206, 213, 254, 353, 407, 408, 409, 410
BseMII CTCAG 2 cut(s) 132, 509
BseSI GKGCMC 2 cut(s) 27, 417
BseX3I CGGCCG 1 cut(s) 224
BseXI GCAGC 6 cut(s) 59, 71, 81, 132, 144, 387
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 7 cut(s) 185, 206, 226, 364, 400, 415, 482
BsiEI CGRYCG 1 cut(s) 227
BsiHKAI GWGCWC 2 cut(s) 27, 160
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 7 cut(s) 186, 207, 223, 227, 233, 248, 408
BslFI GGGAC 2 cut(s) 349, 501
BslI CCNNNNNNNGG 8 cut(s) 206, 213, 254, 353, 407, 408, 409, 410
BsmAI GTCTC 2 cut(s) 58, 131
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 2 cut(s) 349, 501
BsnI GGCC 7 cut(s) 185, 206, 226, 364, 400, 415, 482
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 416
Bsp120I GGGCCC 1 cut(s) 413
Bsp1286I GDGCHC 5 cut(s) 27, 87, 160, 260, 417
BspACI CCGC 3 cut(s) 242, 245, 289
BspANI GGCC 7 cut(s) 185, 206, 226, 364, 400, 415, 482
BspCNI CTCAG 2 cut(s) 131, 508
BspLI GGNNCC 7 cut(s) 184, 231, 240, 259, 401, 414, 415
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 113
BspQI GCTCTTC 1 cut(s) 439
BspTNI GGTCTC 1 cut(s) 131
BsrFI RCCGGY 4 cut(s) 185, 206, 226, 247
BssAI RCCGGY 4 cut(s) 185, 206, 226, 247
BssECI CCNNGG 5 cut(s) 261, 346, 347, 408, 483
BssT1I CCWWGG 2 cut(s) 261, 483
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 342, 506
Bst6I CTCTTC 1 cut(s) 439
BstBAI YACGTR 1 cut(s) 13
BstC8I GCNNGC 5 cut(s) 45, 97, 108, 160, 170
BstDEI CTNAG 3 cut(s) 118, 379, 495
BstHHI GCGC 1 cut(s) 375
BstMAI GTCTC 2 cut(s) 58, 131
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 346, 407
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 2 cut(s) 27, 417
BstV1I GCAGC 6 cut(s) 59, 71, 81, 132, 144, 387
BstZI CGGCCG 1 cut(s) 224
BsuRI GGCC 7 cut(s) 185, 206, 226, 364, 400, 415, 482
BtrI CACGTC 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 1 cut(s) 113
Cac8I GCNNGC 5 cut(s) 45, 97, 108, 160, 170
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 4 cut(s) 185, 206, 226, 247
Cfr13I GGNCC 8 cut(s) 183, 188, 362, 399, 413, 414, 472, 480
CpoI CGGWCCG 1 cut(s) 188
CspI CGGWCCG 1 cut(s) 188
DdeI CTNAG 3 cut(s) 118, 379, 495
EaeI YGGCCR 2 cut(s) 204, 224
EagI CGGCCG 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
EciI GGCGGA 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 158
EclXI CGGCCG 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 261, 483
Eco24I GRGCYC 4 cut(s) 87, 160, 260, 417
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 188, 472
Eco52I CGGCCG 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 158
Eco72I CACGTG 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 158
EcoO109I RGGNCCY 3 cut(s) 399, 413, 472
EcoRI GAATTC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 261, 483
EcoT38I GRGCYC 4 cut(s) 87, 160, 260, 417
ErhI CCWWGG 2 cut(s) 261, 483
Esp3I CGTCTC 1 cut(s) 58
FaiI YATR 3 cut(s) 203, 282, 513
FalI AAGNNNNNCTT 2 cut(s) 388, 420
FaqI GGGAC 2 cut(s) 349, 501
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 7 cut(s) 60, 70, 73, 133, 146, 245, 376
FriOI GRGCYC 4 cut(s) 87, 160, 260, 417
Fsp4HI GCNGC 7 cut(s) 60, 70, 73, 133, 146, 245, 376
FspBI CTAG 1 cut(s) 450
FspI TGCGCA 1 cut(s) 374
GlaI GCGC 1 cut(s) 374
GluI GCNGC 7 cut(s) 60, 70, 73, 133, 146, 245, 376
HaeIII GGCC 7 cut(s) 185, 206, 226, 364, 400, 415, 482
HapII CCGG 7 cut(s) 186, 207, 223, 227, 233, 248, 408
HhaI GCGC 1 cut(s) 375
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HinfI GANTC 1 cut(s) 116
HpaII CCGG 7 cut(s) 186, 207, 223, 227, 233, 248, 408
Hpy166II GTNNAC 2 cut(s) 25, 502
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 4 cut(s) 138, 299, 441, 470
Hpy8I GTNNAC 2 cut(s) 25, 502
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 302, 390, 414
HpyCH4III ACNGT 2 cut(s) 342, 506
HpyCH4IV ACGT 2 cut(s) 12, 21
HpyCH4V TGCA 2 cut(s) 25, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 3 cut(s) 118, 379, 495
HpySE526I ACGT 2 cut(s) 12, 21
HspAI GCGC 1 cut(s) 373
LguI GCTCTTC 1 cut(s) 439
LmnI GCTCC 1 cut(s) 263
Lsp1109I GCAGC 6 cut(s) 59, 71, 81, 132, 144, 387
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 12, 21
MaeIII GTNAC 2 cut(s) 13, 311
MboII GAAGA 2 cut(s) 405, 456
MhlI GDGCHC 5 cut(s) 27, 87, 160, 260, 417
MluCI AATT 2 cut(s) 318, 453
MlyI GAGTC 1 cut(s) 110
MspA1I CMGCKG 2 cut(s) 72, 145
MspI CCGG 7 cut(s) 186, 207, 223, 227, 233, 248, 408
MspR9I CCNGG 2 cut(s) 348, 409
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 370
NciI CCSGG 1 cut(s) 409
NlaIV GGNNCC 7 cut(s) 184, 231, 240, 259, 401, 414, 415
NmeAIII GCCGAG 3 cut(s) 13, 45, 108
NmuCI GTSAC 1 cut(s) 13
NsbI TGCGCA 1 cut(s) 374
PasI CCCWGGG 1 cut(s) 347
PciSI GCTCTTC 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PkrI GCNGC 7 cut(s) 61, 71, 74, 134, 147, 246, 377
PleI GAGTC 1 cut(s) 110
PmaCI CACGTG 1 cut(s) 13
PmlI CACGTG 1 cut(s) 13
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 472
Psp124BI GAGCTC 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 346
PspCI CACGTG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 7 cut(s) 184, 231, 240, 259, 401, 414, 415
PspOMI GGGCCC 1 cut(s) 413
PspPI GGNCC 8 cut(s) 183, 188, 362, 399, 413, 414, 472, 480
PspPPI RGGWCCY 1 cut(s) 472
PstI CTGCAG 1 cut(s) 61
PvuII CAGCTG 2 cut(s) 72, 145
Rsr2I CGGWCCG 1 cut(s) 188
RsrII CGGWCCG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 439
SatI GCNGC 7 cut(s) 60, 70, 73, 133, 146, 245, 376
Sau96I GGNCC 8 cut(s) 183, 188, 362, 399, 413, 414, 472, 480
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 348, 409
SduI GDGCHC 5 cut(s) 27, 87, 160, 260, 417
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 2 cut(s) 188, 472
Sse9I AATT 2 cut(s) 318, 453
SsiI CCGC 3 cut(s) 242, 245, 289
SspMI CTAG 1 cut(s) 450
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 346, 407
StyI CCWWGG 2 cut(s) 261, 483
TaaI ACNGT 2 cut(s) 342, 506
TaiI ACGT 2 cut(s) 15, 24
TaqI TCGA 4 cut(s) 77, 139, 277, 391
TaqII GACCGA 1 cut(s) 32
TasI AATT 2 cut(s) 318, 453
TauI GCSGC 1 cut(s) 247
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 6 cut(s) 59, 69, 72, 132, 145, 375
Tsp45I GTSAC 1 cut(s) 13
TspRI CASTG 1 cut(s) 345
VneI GTGCAC 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 188, 472
XapI RAATTY 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.